Wall clock time and date at job start Tue Mar 31 2020 14:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46505 * 119.99906 * 2 1 4 4 C 1.50697 * 109.47284 * 270.00479 * 3 2 1 5 5 H 1.07998 * 119.99728 * 359.97438 * 4 3 2 6 6 C 1.37874 * 120.00241 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00210 * 179.97438 * 6 4 3 8 8 Si 1.86804 * 119.99922 * 359.97438 * 6 4 3 9 9 H 1.48497 * 109.47399 * 90.00001 * 8 6 4 10 10 H 1.48495 * 109.47134 * 210.00088 * 8 6 4 11 11 H 1.48503 * 109.47086 * 330.00143 * 8 6 4 12 12 C 1.34775 * 120.00050 * 180.02562 * 2 1 3 13 13 O 1.21286 * 119.99778 * 184.44960 * 12 2 1 14 14 C 1.50697 * 120.00196 * 4.45347 * 12 2 1 15 15 N 1.46500 * 110.01202 * 317.57851 * 14 12 2 16 16 C 1.34773 * 120.00257 * 298.18461 * 15 14 12 17 17 O 1.21501 * 120.00323 * 4.88246 * 16 15 14 18 18 O 1.34643 * 119.99704 * 184.88584 * 16 15 14 19 19 C 1.45207 * 116.99640 * 183.58502 * 18 16 15 20 20 C 1.52997 * 109.47133 * 58.82613 * 19 18 16 21 21 C 1.53005 * 109.46864 * 178.83169 * 19 18 16 22 22 C 1.52999 * 109.46840 * 298.82337 * 19 18 16 23 23 C 1.54264 * 110.03308 * 196.14311 * 14 12 2 24 24 C 1.54889 * 104.19473 * 217.10188 * 23 14 12 25 25 C 1.54894 * 102.74964 * 37.94072 * 24 23 14 26 26 C 1.53868 * 110.03508 * 78.97195 * 14 12 2 27 27 H 1.08998 * 109.46736 * 264.83727 * 1 2 3 28 28 H 1.08999 * 109.47423 * 24.83484 * 1 2 3 29 29 H 1.08998 * 109.47246 * 144.84162 * 1 2 3 30 30 H 1.09004 * 109.46981 * 30.00563 * 3 2 1 31 31 H 1.08998 * 109.47137 * 150.00065 * 3 2 1 32 32 H 0.97001 * 119.99903 * 179.97438 * 7 6 4 33 33 H 0.97005 * 119.99690 * 118.17920 * 15 14 12 34 34 H 1.08998 * 109.47198 * 63.03639 * 20 19 18 35 35 H 1.09000 * 109.46751 * 183.02636 * 20 19 18 36 36 H 1.08994 * 109.47285 * 303.02685 * 20 19 18 37 37 H 1.08997 * 109.47255 * 59.99369 * 21 19 18 38 38 H 1.09003 * 109.46595 * 179.97438 * 21 19 18 39 39 H 1.08998 * 109.46744 * 299.99377 * 21 19 18 40 40 H 1.09005 * 109.46738 * 60.00814 * 22 19 18 41 41 H 1.09003 * 109.47146 * 179.97438 * 22 19 18 42 42 H 1.08997 * 109.47361 * 300.00681 * 22 19 18 43 43 H 1.08997 * 110.49039 * 98.42341 * 23 14 12 44 44 H 1.09002 * 110.48536 * 335.77573 * 23 14 12 45 45 H 1.08997 * 110.75736 * 279.62887 * 24 23 14 46 46 H 1.09001 * 110.75791 * 156.25476 * 24 23 14 47 47 H 1.09007 * 110.48648 * 80.73320 * 25 24 23 48 48 H 1.08994 * 110.48693 * 203.24745 * 25 24 23 49 49 H 1.09002 * 110.02988 * 359.97438 * 26 14 12 50 50 H 1.08997 * 110.03480 * 238.57393 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0980 1.0959 -2.2416 6 6 3.1268 2.8776 -1.6727 7 7 3.3463 3.2571 -2.9127 8 14 3.7338 3.9288 -0.2529 9 1 5.1069 3.5070 0.1237 10 1 3.7497 5.3554 -0.6647 11 1 2.8273 3.7596 0.9112 12 6 2.1389 -1.1672 -0.0005 13 8 3.3490 -1.1687 0.0810 14 6 1.3889 -2.4703 -0.1024 15 7 0.1982 -2.4314 0.7502 16 6 0.3283 -2.2783 2.0828 17 8 1.4252 -2.0836 2.5678 18 8 -0.7573 -2.3410 2.8768 19 6 -0.5543 -2.0877 4.2922 20 6 0.0404 -0.6907 4.4801 21 6 -1.8957 -2.1738 5.0231 22 6 0.4061 -3.1322 4.8645 23 6 2.3026 -3.6402 0.3173 24 6 1.9108 -4.7913 -0.6421 25 6 1.6640 -4.0517 -1.9805 26 6 0.9828 -2.7319 -1.5633 27 1 -0.3633 -0.0925 1.0235 28 1 -0.3634 0.9326 -0.4316 29 1 -0.3633 -0.8402 -0.5918 30 1 1.6084 2.0284 0.5139 31 1 3.1499 1.1385 0.5138 32 1 3.8231 4.0830 -3.0899 33 1 -0.6839 -2.5159 0.3555 34 1 -0.6673 0.0567 4.1214 35 1 0.2427 -0.5212 5.5377 36 1 0.9693 -0.6122 3.9153 37 1 -2.3193 -3.1691 4.8891 38 1 -1.7432 -1.9841 6.0856 39 1 -2.5800 -1.4297 4.6154 40 1 1.3618 -3.0709 4.3437 41 1 0.5589 -2.9418 5.9268 42 1 -0.0175 -4.1275 4.7305 43 1 2.1090 -3.9233 1.3519 44 1 3.3508 -3.3724 0.1838 45 1 1.0015 -5.2860 -0.3008 46 1 2.7273 -5.5066 -0.7410 47 1 2.6090 -3.8503 -2.4851 48 1 1.0061 -4.6362 -2.6237 49 1 1.3279 -1.9161 -2.1986 50 1 -0.1001 -2.8308 -1.6379 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170725444.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:47 Heat of formation + Delta-G solvation = -105.668954 kcal Electronic energy + Delta-G solvation = -31022.368681 eV Core-core repulsion = 27050.361892 eV Total energy + Delta-G solvation = -3972.006789 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.21434 -39.77624 -37.38154 -36.55086 -35.07882 -34.27397 -33.33393 -32.37464 -29.10484 -28.50297 -27.85608 -27.53146 -27.43003 -25.80995 -22.93100 -22.85630 -21.15264 -20.42745 -19.75207 -18.59582 -18.07519 -16.99071 -16.81567 -16.32217 -15.96993 -15.76564 -15.37217 -14.76288 -14.57213 -14.54029 -14.17759 -13.86582 -13.59272 -13.28705 -13.05826 -12.64950 -12.50233 -12.41215 -12.34055 -12.09479 -12.01529 -11.98127 -11.95234 -11.66228 -11.49635 -11.39705 -11.25291 -11.17633 -11.12765 -10.95345 -10.88460 -10.54734 -10.48019 -10.37817 -10.11988 -9.88754 -9.71039 -9.50672 -8.57601 -8.51758 -7.63360 -6.08025 -4.06416 2.10971 2.92324 3.31199 3.36602 3.37472 3.40576 3.83662 4.12480 4.41658 4.55201 4.57793 4.61891 4.65864 4.80467 4.88076 5.15561 5.27390 5.32642 5.35712 5.41227 5.42557 5.51025 5.53768 5.57198 5.62030 5.65104 5.67624 5.77883 5.80242 5.84981 5.87070 5.89646 6.00454 6.07626 6.14364 6.22782 6.26436 6.32537 6.42270 6.49227 6.57748 6.74636 7.01434 7.37451 7.45632 7.63111 8.29725 8.46328 8.48432 8.93059 9.02413 9.53181 11.05174 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.011302 B = 0.005006 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.924155 B = 5592.008584 C = 7242.147270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.590 5.590 3 C 0.217 3.783 4 C -0.527 4.527 5 H 0.074 0.926 6 C 0.073 3.927 7 N -0.898 5.898 8 Si 0.875 3.125 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.521 3.479 13 O -0.529 6.529 14 C 0.176 3.824 15 N -0.700 5.700 16 C 0.647 3.353 17 O -0.547 6.547 18 O -0.367 6.367 19 C 0.138 3.862 20 C -0.185 4.185 21 C -0.139 4.139 22 C -0.183 4.183 23 C -0.118 4.118 24 C -0.124 4.124 25 C -0.121 4.121 26 C -0.121 4.121 27 H 0.037 0.963 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.027 0.973 31 H 0.037 0.963 32 H 0.264 0.736 33 H 0.405 0.595 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.090 0.910 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.076 0.924 44 H 0.098 0.902 45 H 0.064 0.936 46 H 0.070 0.930 47 H 0.074 0.926 48 H 0.070 0.930 49 H 0.089 0.911 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.774 -15.544 10.994 22.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.321 5.321 3 C 0.096 3.904 4 C -0.566 4.566 5 H 0.092 0.908 6 C -0.129 4.129 7 N -0.536 5.536 8 Si 0.702 3.298 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.305 3.695 13 O -0.404 6.404 14 C 0.088 3.912 15 N -0.363 5.363 16 C 0.400 3.600 17 O -0.434 6.434 18 O -0.283 6.283 19 C 0.101 3.899 20 C -0.243 4.243 21 C -0.196 4.196 22 C -0.240 4.240 23 C -0.157 4.157 24 C -0.161 4.161 25 C -0.158 4.158 26 C -0.159 4.159 27 H 0.056 0.944 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.045 0.955 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.242 0.758 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.109 0.891 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.094 0.906 44 H 0.117 0.883 45 H 0.083 0.917 46 H 0.089 0.911 47 H 0.093 0.907 48 H 0.089 0.911 49 H 0.108 0.892 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.506 -15.271 11.267 22.193 hybrid contribution -0.224 0.792 0.505 0.966 sum -11.730 -14.478 11.772 22.041 Atomic orbital electron populations 1.21763 0.81438 1.02423 0.99587 1.47642 1.05943 1.06915 1.71601 1.19654 0.92544 0.79972 0.98206 1.21319 1.36927 1.07164 0.91188 0.90773 1.24831 0.95198 0.97329 0.95529 1.69894 1.41549 1.23589 1.18598 0.86866 0.80244 0.79693 0.83015 1.19846 1.21073 1.19122 1.20126 0.87838 0.84635 0.76888 1.90641 1.13855 1.86445 1.49483 1.21249 0.84257 0.95281 0.90449 1.45225 1.09997 1.77721 1.03333 1.18057 0.82880 0.76555 0.82481 1.90979 1.25935 1.52645 1.73886 1.86276 1.36485 1.84414 1.21083 1.22023 0.96505 0.95927 0.75428 1.22520 1.03596 0.94853 1.03283 1.21850 0.94983 1.03135 0.99665 1.22522 1.01743 0.97956 1.01798 1.22670 1.01038 0.92217 0.99738 1.22528 1.01125 0.97406 0.95050 1.22354 1.01171 0.94831 0.97484 1.22422 1.01076 0.99854 0.92524 0.94430 0.91004 0.92427 0.95518 0.94515 0.92584 0.75834 0.92133 0.91266 0.89166 0.91632 0.90295 0.91480 0.89102 0.91383 0.92382 0.90568 0.88322 0.91727 0.91138 0.90715 0.91106 0.89200 0.90262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.52 8.91 59.85 0.53 2.05 16 2 N -0.59 -12.72 2.86 -182.95 -0.52 -13.24 16 3 C 0.22 5.55 4.24 -5.19 -0.02 5.53 16 4 C -0.53 -15.30 9.94 -34.44 -0.34 -15.64 16 5 H 0.07 2.32 8.06 -52.49 -0.42 1.89 16 6 C 0.07 2.16 5.47 -17.82 -0.10 2.07 16 7 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 8 Si 0.87 22.13 27.47 -169.99 -4.67 17.46 16 9 H -0.27 -6.97 7.11 56.52 0.40 -6.57 16 10 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 12 C 0.52 11.13 5.07 -10.99 -0.06 11.08 16 13 O -0.53 -13.62 15.00 5.55 0.08 -13.53 16 14 C 0.18 2.72 0.47 -131.86 -0.06 2.66 16 15 N -0.70 -9.13 2.85 -52.51 -0.15 -9.28 16 16 C 0.65 9.60 5.82 54.05 0.31 9.91 16 17 O -0.55 -9.88 9.68 -19.27 -0.19 -10.06 16 18 O -0.37 -4.71 9.94 -40.33 -0.40 -5.11 16 19 C 0.14 1.56 1.13 -90.62 -0.10 1.45 16 20 C -0.19 -2.29 8.40 37.16 0.31 -1.98 16 21 C -0.14 -1.13 8.85 37.16 0.33 -0.80 16 22 C -0.18 -2.02 8.39 37.16 0.31 -1.71 16 23 C -0.12 -1.77 5.50 -25.07 -0.14 -1.91 16 24 C -0.12 -1.38 6.91 -24.74 -0.17 -1.55 16 25 C -0.12 -1.35 6.83 -25.07 -0.17 -1.52 16 26 C -0.12 -1.55 5.22 -25.62 -0.13 -1.69 16 27 H 0.04 0.58 6.81 -51.93 -0.35 0.22 16 28 H 0.07 1.20 8.03 -51.93 -0.42 0.79 16 29 H 0.06 0.77 4.81 -51.93 -0.25 0.52 16 30 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 31 H 0.04 1.02 6.79 -51.93 -0.35 0.67 16 32 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 33 H 0.40 4.02 7.38 -40.82 -0.30 3.71 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.09 1.45 5.85 -51.93 -0.30 1.14 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.09 1.27 5.85 -51.93 -0.30 0.96 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.08 1.19 6.46 -51.93 -0.34 0.85 16 44 H 0.10 1.75 6.76 -51.93 -0.35 1.40 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 48 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.09 1.40 7.67 -51.93 -0.40 1.00 16 50 H 0.08 0.77 7.28 -51.93 -0.38 0.39 16 LS Contribution 380.41 15.07 5.73 5.73 Total: -1.00 -35.57 380.41 -7.19 -42.75 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -8.35 Total: 4.32 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: 0.51 Total: 7.96 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: 0.10 Total: -49.52 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -0.50 Total: -28.71 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.67 Total: 17.46 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.57 -7.19 -42.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170725444.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.915 kcal (2) G-P(sol) polarization free energy of solvation -35.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds