Wall clock time and date at job start Tue Mar 31 2020 14:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46505 * 119.99906 * 2 1 4 4 C 1.50697 * 109.47284 * 270.00479 * 3 2 1 5 5 H 1.07998 * 119.99728 * 359.97438 * 4 3 2 6 6 C 1.37874 * 120.00241 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00210 * 179.97438 * 6 4 3 8 8 Si 1.86804 * 119.99922 * 359.97438 * 6 4 3 9 9 H 1.48497 * 109.47399 * 90.00001 * 8 6 4 10 10 H 1.48495 * 109.47134 * 210.00088 * 8 6 4 11 11 H 1.48503 * 109.47086 * 330.00143 * 8 6 4 12 12 C 1.34775 * 120.00050 * 180.02562 * 2 1 3 13 13 O 1.21286 * 119.99778 * 184.44960 * 12 2 1 14 14 C 1.50697 * 120.00196 * 4.45347 * 12 2 1 15 15 N 1.46500 * 110.01202 * 317.57851 * 14 12 2 16 16 C 1.34773 * 120.00257 * 298.18461 * 15 14 12 17 17 O 1.21501 * 120.00323 * 4.88246 * 16 15 14 18 18 O 1.34643 * 119.99704 * 184.88584 * 16 15 14 19 19 C 1.45207 * 116.99640 * 183.58502 * 18 16 15 20 20 C 1.52997 * 109.47133 * 58.82613 * 19 18 16 21 21 C 1.53005 * 109.46864 * 178.83169 * 19 18 16 22 22 C 1.52999 * 109.46840 * 298.82337 * 19 18 16 23 23 C 1.54264 * 110.03308 * 196.14311 * 14 12 2 24 24 C 1.54889 * 104.19473 * 217.10188 * 23 14 12 25 25 C 1.54894 * 102.74964 * 37.94072 * 24 23 14 26 26 C 1.53868 * 110.03508 * 78.97195 * 14 12 2 27 27 H 1.08998 * 109.46736 * 264.83727 * 1 2 3 28 28 H 1.08999 * 109.47423 * 24.83484 * 1 2 3 29 29 H 1.08998 * 109.47246 * 144.84162 * 1 2 3 30 30 H 1.09004 * 109.46981 * 30.00563 * 3 2 1 31 31 H 1.08998 * 109.47137 * 150.00065 * 3 2 1 32 32 H 0.97001 * 119.99903 * 179.97438 * 7 6 4 33 33 H 0.97005 * 119.99690 * 118.17920 * 15 14 12 34 34 H 1.08998 * 109.47198 * 63.03639 * 20 19 18 35 35 H 1.09000 * 109.46751 * 183.02636 * 20 19 18 36 36 H 1.08994 * 109.47285 * 303.02685 * 20 19 18 37 37 H 1.08997 * 109.47255 * 59.99369 * 21 19 18 38 38 H 1.09003 * 109.46595 * 179.97438 * 21 19 18 39 39 H 1.08998 * 109.46744 * 299.99377 * 21 19 18 40 40 H 1.09005 * 109.46738 * 60.00814 * 22 19 18 41 41 H 1.09003 * 109.47146 * 179.97438 * 22 19 18 42 42 H 1.08997 * 109.47361 * 300.00681 * 22 19 18 43 43 H 1.08997 * 110.49039 * 98.42341 * 23 14 12 44 44 H 1.09002 * 110.48536 * 335.77573 * 23 14 12 45 45 H 1.08997 * 110.75736 * 279.62887 * 24 23 14 46 46 H 1.09001 * 110.75791 * 156.25476 * 24 23 14 47 47 H 1.09007 * 110.48648 * 80.73320 * 25 24 23 48 48 H 1.08994 * 110.48693 * 203.24745 * 25 24 23 49 49 H 1.09002 * 110.02988 * 359.97438 * 26 14 12 50 50 H 1.08997 * 110.03480 * 238.57393 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0980 1.0959 -2.2416 6 6 3.1268 2.8776 -1.6727 7 7 3.3463 3.2571 -2.9127 8 14 3.7338 3.9288 -0.2529 9 1 5.1069 3.5070 0.1237 10 1 3.7497 5.3554 -0.6647 11 1 2.8273 3.7596 0.9112 12 6 2.1389 -1.1672 -0.0005 13 8 3.3490 -1.1687 0.0810 14 6 1.3889 -2.4703 -0.1024 15 7 0.1982 -2.4314 0.7502 16 6 0.3283 -2.2783 2.0828 17 8 1.4252 -2.0836 2.5678 18 8 -0.7573 -2.3410 2.8768 19 6 -0.5543 -2.0877 4.2922 20 6 0.0404 -0.6907 4.4801 21 6 -1.8957 -2.1738 5.0231 22 6 0.4061 -3.1322 4.8645 23 6 2.3026 -3.6402 0.3173 24 6 1.9108 -4.7913 -0.6421 25 6 1.6640 -4.0517 -1.9805 26 6 0.9828 -2.7319 -1.5633 27 1 -0.3633 -0.0925 1.0235 28 1 -0.3634 0.9326 -0.4316 29 1 -0.3633 -0.8402 -0.5918 30 1 1.6084 2.0284 0.5139 31 1 3.1499 1.1385 0.5138 32 1 3.8231 4.0830 -3.0899 33 1 -0.6839 -2.5159 0.3555 34 1 -0.6673 0.0567 4.1214 35 1 0.2427 -0.5212 5.5377 36 1 0.9693 -0.6122 3.9153 37 1 -2.3193 -3.1691 4.8891 38 1 -1.7432 -1.9841 6.0856 39 1 -2.5800 -1.4297 4.6154 40 1 1.3618 -3.0709 4.3437 41 1 0.5589 -2.9418 5.9268 42 1 -0.0175 -4.1275 4.7305 43 1 2.1090 -3.9233 1.3519 44 1 3.3508 -3.3724 0.1838 45 1 1.0015 -5.2860 -0.3008 46 1 2.7273 -5.5066 -0.7410 47 1 2.6090 -3.8503 -2.4851 48 1 1.0061 -4.6362 -2.6237 49 1 1.3279 -1.9161 -2.1986 50 1 -0.1001 -2.8308 -1.6379 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170725444.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:46 Heat of formation + Delta-G solvation = -130.567977 kcal Electronic energy + Delta-G solvation = -31023.448384 eV Core-core repulsion = 27050.361892 eV Total energy + Delta-G solvation = -3973.086492 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.45416 -41.04597 -38.80870 -37.66788 -36.81545 -35.41834 -34.80208 -34.16244 -30.79230 -29.76975 -29.22702 -28.36474 -28.25595 -27.37812 -24.84751 -23.94815 -22.29463 -21.78828 -20.78778 -20.07032 -19.18471 -19.13791 -18.28768 -17.53981 -17.22820 -17.07261 -16.73856 -16.30559 -16.04798 -15.63095 -15.47875 -15.24499 -14.90317 -14.52264 -14.46167 -14.22879 -13.91332 -13.73590 -13.52278 -13.33089 -13.23840 -13.12293 -12.91653 -12.86347 -12.83774 -12.76587 -12.52097 -12.49185 -12.30151 -12.24177 -12.16164 -12.05711 -11.92571 -11.78393 -11.53954 -11.36156 -11.14324 -11.03058 -10.87274 -9.97480 -9.45288 -8.38359 -6.42663 1.00409 1.26657 1.31055 1.39136 1.74355 1.79044 2.22957 2.26253 2.95340 3.09237 3.39277 3.41379 3.66892 3.77192 3.81658 3.96573 4.09411 4.27491 4.33073 4.37357 4.45914 4.48522 4.53177 4.61023 4.64786 4.67764 4.72644 4.77482 4.79445 4.80694 4.85003 4.86674 4.91100 4.94306 5.04682 5.15185 5.17784 5.19942 5.29490 5.30598 5.38659 5.40119 5.43706 5.57063 5.58011 6.19377 6.36752 6.57257 6.63266 7.17291 7.33903 7.37830 8.77985 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.011302 B = 0.005006 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.924155 B = 5592.008584 C = 7242.147270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.599 5.599 3 C 0.227 3.773 4 C -0.533 4.533 5 H 0.037 0.963 6 C 0.019 3.981 7 N -0.938 5.938 8 Si 0.940 3.060 9 H -0.279 1.279 10 H -0.268 1.268 11 H -0.248 1.248 12 C 0.508 3.492 13 O -0.587 6.587 14 C 0.188 3.812 15 N -0.685 5.685 16 C 0.646 3.354 17 O -0.582 6.582 18 O -0.359 6.359 19 C 0.129 3.871 20 C -0.183 4.183 21 C -0.132 4.132 22 C -0.179 4.179 23 C -0.119 4.119 24 C -0.109 4.109 25 C -0.117 4.117 26 C -0.119 4.119 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.041 0.959 31 H 0.008 0.992 32 H 0.270 0.730 33 H 0.424 0.576 34 H 0.062 0.938 35 H 0.088 0.912 36 H 0.048 0.952 37 H 0.076 0.924 38 H 0.099 0.901 39 H 0.070 0.930 40 H 0.056 0.944 41 H 0.086 0.914 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.060 0.940 45 H 0.092 0.908 46 H 0.081 0.919 47 H 0.055 0.945 48 H 0.108 0.892 49 H 0.057 0.943 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.973 -16.969 12.414 26.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.329 5.329 3 C 0.104 3.896 4 C -0.571 4.571 5 H 0.056 0.944 6 C -0.180 4.180 7 N -0.578 5.578 8 Si 0.763 3.237 9 H -0.204 1.204 10 H -0.193 1.193 11 H -0.172 1.172 12 C 0.295 3.705 13 O -0.467 6.467 14 C 0.099 3.901 15 N -0.349 5.349 16 C 0.399 3.601 17 O -0.471 6.471 18 O -0.274 6.274 19 C 0.093 3.907 20 C -0.240 4.240 21 C -0.189 4.189 22 C -0.236 4.236 23 C -0.157 4.157 24 C -0.147 4.147 25 C -0.154 4.154 26 C -0.157 4.157 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.110 0.890 30 H 0.059 0.941 31 H 0.026 0.974 32 H 0.079 0.921 33 H 0.265 0.735 34 H 0.082 0.918 35 H 0.106 0.894 36 H 0.067 0.933 37 H 0.095 0.905 38 H 0.117 0.883 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.105 0.895 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.078 0.922 45 H 0.111 0.889 46 H 0.099 0.901 47 H 0.073 0.927 48 H 0.127 0.873 49 H 0.076 0.924 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -14.798 -16.713 12.685 25.676 hybrid contribution 0.788 1.221 0.074 1.455 sum -14.010 -15.492 12.759 24.476 Atomic orbital electron populations 1.22027 0.78263 1.03897 1.01194 1.47756 1.08009 1.05786 1.71391 1.19278 0.92228 0.82367 0.95710 1.21466 1.36887 1.06851 0.91904 0.94430 1.25706 0.95226 0.98770 0.98293 1.70016 1.42509 1.24482 1.20792 0.85839 0.79425 0.78362 0.80091 1.20438 1.19267 1.17160 1.21295 0.87695 0.86407 0.75121 1.90598 1.16666 1.87551 1.51836 1.21056 0.84764 0.91634 0.92686 1.44978 1.10125 1.77164 1.02676 1.18238 0.82825 0.76043 0.82959 1.90998 1.27573 1.53915 1.74634 1.86300 1.35174 1.84037 1.21853 1.22366 0.98523 0.95071 0.74788 1.22478 1.01647 0.95997 1.03861 1.21863 0.92764 1.04006 1.00255 1.22467 1.00020 0.98623 1.02508 1.22607 0.98839 0.93779 1.00516 1.22506 1.02712 0.95942 0.93493 1.22374 1.00977 0.94162 0.97923 1.22487 1.03920 0.99734 0.89515 0.92883 0.91227 0.89017 0.94111 0.97379 0.92125 0.73502 0.91848 0.89354 0.93319 0.90534 0.88266 0.91048 0.92546 0.89481 0.91236 0.91408 0.92172 0.88910 0.90055 0.92657 0.87314 0.92447 0.85820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.83 8.91 127.77 1.14 3.97 16 2 N -0.60 -26.53 2.86 -851.13 -2.43 -28.96 16 3 C 0.23 11.97 4.24 85.63 0.36 12.33 16 4 C -0.53 -32.14 9.94 25.60 0.25 -31.89 16 5 H 0.04 2.47 8.06 -2.91 -0.02 2.45 16 6 C 0.02 1.14 5.47 84.65 0.46 1.60 16 7 N -0.94 -59.61 13.96 21.45 0.30 -59.31 16 8 Si 0.94 46.39 27.47 68.60 1.88 48.28 16 9 H -0.28 -13.96 7.11 99.48 0.71 -13.25 16 10 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 11 H -0.25 -11.39 6.54 99.48 0.65 -10.74 16 12 C 0.51 22.65 5.07 87.66 0.44 23.10 16 13 O -0.59 -32.48 15.00 -3.05 -0.05 -32.52 16 14 C 0.19 5.76 0.47 3.58 0.00 5.76 16 15 N -0.68 -16.61 2.85 -550.45 -1.57 -18.18 16 16 C 0.65 18.57 5.82 129.79 0.76 19.33 16 17 O -0.58 -21.59 9.68 19.84 0.19 -21.40 16 18 O -0.36 -8.45 9.94 -55.52 -0.55 -9.00 16 19 C 0.13 2.65 1.13 -10.79 -0.01 2.64 16 20 C -0.18 -4.35 8.40 71.98 0.60 -3.74 16 21 C -0.13 -1.67 8.85 71.98 0.64 -1.03 16 22 C -0.18 -3.70 8.39 71.98 0.60 -3.10 16 23 C -0.12 -3.61 5.50 31.67 0.17 -3.44 16 24 C -0.11 -2.18 6.91 31.89 0.22 -1.96 16 25 C -0.12 -2.35 6.83 31.67 0.22 -2.13 16 26 C -0.12 -2.86 5.22 31.32 0.16 -2.69 16 27 H 0.05 1.54 6.81 -2.39 -0.02 1.52 16 28 H 0.07 2.26 8.03 -2.39 -0.02 2.24 16 29 H 0.09 2.24 4.81 -2.39 -0.01 2.23 16 30 H 0.04 2.02 7.13 -2.38 -0.02 2.01 16 31 H 0.01 0.47 6.79 -2.39 -0.02 0.46 16 32 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 33 H 0.42 6.82 7.38 -92.70 -0.68 6.14 16 34 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.05 1.60 5.85 -2.39 -0.01 1.58 16 37 H 0.08 0.83 8.14 -2.39 -0.02 0.82 16 38 H 0.10 0.88 8.14 -2.39 -0.02 0.87 16 39 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.06 1.60 5.85 -2.38 -0.01 1.58 16 41 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.07 2.15 6.46 -2.39 -0.02 2.13 16 44 H 0.06 2.30 6.76 -2.39 -0.02 2.29 16 45 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 47 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 48 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.06 1.80 7.67 -2.39 -0.02 1.78 16 50 H 0.12 1.85 7.28 -2.39 -0.02 1.83 16 Total: -1.00 -84.86 380.41 4.00 -80.86 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: 0.20 Total: 21.49 kcal Atomic # 6 Polarization: 12.71 SS G_CDS: 6.03 Total: 18.74 kcal Atomic # 7 Polarization: -102.74 SS G_CDS: -3.70 Total: -106.44 kcal Atomic # 8 Polarization: -62.52 SS G_CDS: -0.41 Total: -62.93 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 1.88 Total: 48.28 kcal Total: -84.86 4.00 -80.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170725444.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.711 kcal (2) G-P(sol) polarization free energy of solvation -84.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds