Wall clock time and date at job start Tue Mar 31 2020 15:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47183 * 2 1 4 4 H 1.09005 * 109.47141 * 304.99660 * 3 2 1 5 5 C 1.50694 * 109.47265 * 185.00042 * 3 2 1 6 6 H 1.08002 * 120.00179 * 239.99421 * 5 3 2 7 7 C 1.37879 * 120.00472 * 59.99739 * 5 3 2 8 8 N 1.31514 * 119.99350 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00608 * 179.97438 * 7 5 3 10 10 H 1.48490 * 109.47339 * 179.97438 * 9 7 5 11 11 H 1.48493 * 109.47239 * 300.00306 * 9 7 5 12 12 H 1.48504 * 109.46636 * 59.99865 * 9 7 5 13 13 N 1.46500 * 109.47436 * 64.99278 * 3 2 1 14 14 C 1.34774 * 120.00476 * 275.00648 * 13 3 2 15 15 O 1.21276 * 119.99690 * 359.97438 * 14 13 3 16 16 C 1.50701 * 120.00074 * 179.97438 * 14 13 3 17 17 H 1.09004 * 109.87145 * 318.98507 * 16 14 13 18 18 C 1.54323 * 109.88206 * 79.99627 * 16 14 13 19 19 C 1.55156 * 102.93690 * 141.61190 * 18 16 14 20 20 C 1.54907 * 101.58268 * 324.49639 * 19 18 16 21 21 N 1.47020 * 109.88065 * 197.80989 * 16 14 13 22 22 C 1.34773 * 125.65124 * 61.59136 * 21 16 14 23 23 O 1.21515 * 119.99969 * 0.02562 * 22 21 16 24 24 O 1.34638 * 119.99798 * 179.97438 * 22 21 16 25 25 C 1.45205 * 116.99566 * 180.02562 * 24 22 21 26 26 C 1.53002 * 109.47207 * 60.00598 * 25 24 22 27 27 C 1.53004 * 109.46656 * 180.02562 * 25 24 22 28 28 C 1.52991 * 109.47325 * 300.00293 * 25 24 22 29 29 H 1.09000 * 109.46964 * 300.00053 * 1 2 3 30 30 H 1.08997 * 109.47414 * 60.00416 * 1 2 3 31 31 H 1.09006 * 109.46777 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47402 * 239.99392 * 2 1 3 33 33 H 1.09005 * 109.47290 * 119.99877 * 2 1 3 34 34 H 0.97005 * 119.99661 * 179.97438 * 8 7 5 35 35 H 0.97008 * 119.99239 * 95.00725 * 13 3 2 36 36 H 1.09003 * 110.72223 * 259.97224 * 18 16 14 37 37 H 1.08996 * 110.71853 * 23.25098 * 18 16 14 38 38 H 1.08996 * 111.00658 * 82.57843 * 19 18 16 39 39 H 1.09010 * 111.00227 * 206.38451 * 19 18 16 40 40 H 1.09007 * 110.36558 * 155.84956 * 20 19 18 41 41 H 1.08997 * 110.36705 * 278.05927 * 20 19 18 42 42 H 1.09004 * 109.47019 * 59.99483 * 26 25 24 43 43 H 1.09000 * 109.47136 * 179.97438 * 26 25 24 44 44 H 1.09004 * 109.47156 * 300.00000 * 26 25 24 45 45 H 1.08997 * 109.47140 * 60.00394 * 27 25 24 46 46 H 1.09000 * 109.46910 * 180.02562 * 27 25 24 47 47 H 1.08996 * 109.47483 * 299.99745 * 27 25 24 48 48 H 1.09000 * 109.47240 * 60.00261 * 28 25 24 49 49 H 1.09000 * 109.47141 * 180.02562 * 28 25 24 50 50 H 1.08998 * 109.47595 * 300.00504 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5418 1.4443 -0.1238 6 1 4.1471 1.8890 0.6522 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3365 -2.1728 9 14 6.0049 0.8813 -1.3818 10 1 6.3978 0.2167 -2.6502 11 1 6.4994 2.2814 -1.3822 12 1 6.5975 0.1474 -0.2348 13 7 1.6523 2.0976 1.2517 14 6 0.4350 2.6645 1.3668 15 8 -0.3393 2.6326 0.4340 16 6 0.0361 3.3378 2.6547 17 1 0.3770 2.7452 3.5037 18 6 0.6518 4.7514 2.7204 19 6 -0.4769 5.5918 3.3739 20 6 -1.7433 4.9329 2.7725 21 7 -1.4248 3.4951 2.7050 22 6 -2.3239 2.4912 2.6906 23 8 -1.9459 1.3378 2.6323 24 8 -3.6409 2.7662 2.7420 25 6 -4.5516 1.6354 2.7233 26 6 -4.2723 0.7356 3.9288 27 6 -5.9941 2.1414 2.7873 28 6 -4.3481 0.8379 1.4336 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8293 -0.0613 -2.9497 35 1 2.2719 2.1233 1.9977 36 1 1.5454 4.7542 3.3446 37 1 0.8775 5.1206 1.7200 38 1 -0.4614 5.4902 4.4590 39 1 -0.4040 6.6392 3.0807 40 1 -2.6029 5.1009 3.4214 41 1 -1.9389 5.3271 1.7754 42 1 -4.4173 1.3039 4.8477 43 1 -4.9562 -0.1130 3.9150 44 1 -3.2446 0.3753 3.8829 45 1 -6.1929 2.7822 1.9283 46 1 -6.6778 1.2926 2.7737 47 1 -6.1394 2.7098 3.7059 48 1 -3.3204 0.4775 1.3876 49 1 -5.0321 -0.0106 1.4194 50 1 -4.5470 1.4789 0.5748 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183809668.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:30 Heat of formation + Delta-G solvation = -119.274890 kcal Electronic energy + Delta-G solvation = -30426.096490 eV Core-core repulsion = 26453.499703 eV Total energy + Delta-G solvation = -3972.596787 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.79549 -39.45872 -37.65129 -36.28407 -34.86000 -33.99564 -32.37590 -31.46439 -30.93640 -29.25029 -27.45166 -27.30891 -26.78134 -24.43538 -23.04889 -21.87134 -21.61384 -20.14399 -19.30819 -19.04293 -17.92893 -17.30335 -16.62507 -16.14835 -15.61411 -15.27186 -15.15339 -14.73098 -14.44324 -14.29154 -13.90527 -13.69336 -13.34282 -13.15919 -13.08940 -12.66034 -12.53572 -12.47770 -12.11840 -11.96175 -11.89381 -11.80510 -11.66606 -11.39197 -11.35574 -11.23493 -11.19210 -11.12442 -10.98487 -10.91732 -10.74591 -10.28548 -10.25413 -10.04355 -9.80830 -9.48173 -9.20470 -8.96736 -8.45736 -8.36763 -7.72359 -6.07175 -4.16855 2.13510 3.10524 3.27567 3.32946 3.33825 3.42158 3.90039 4.20148 4.38918 4.45884 4.58180 4.72266 4.75613 4.86764 4.91359 5.16062 5.23480 5.31940 5.39953 5.44943 5.52186 5.58287 5.61480 5.64519 5.66415 5.74808 5.76173 5.83040 5.89765 5.95613 6.06899 6.22480 6.31950 6.48939 6.56389 6.59077 6.68578 6.86468 7.23987 7.35548 7.50043 7.57272 7.62311 7.70042 7.82627 7.97705 8.26623 8.56820 8.74415 8.83629 9.21693 9.50416 10.97848 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.016846 B = 0.003690 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.719252 B = 7585.248003 C = 8792.145615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.125 4.125 3 C 0.274 3.726 4 H 0.047 0.953 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.286 1.286 11 H -0.277 1.277 12 H -0.276 1.276 13 N -0.706 5.706 14 C 0.498 3.502 15 O -0.535 6.535 16 C 0.134 3.866 17 H 0.094 0.906 18 C -0.120 4.120 19 C -0.131 4.131 20 C 0.106 3.894 21 N -0.585 5.585 22 C 0.674 3.326 23 O -0.551 6.551 24 O -0.364 6.364 25 C 0.137 3.863 26 C -0.182 4.182 27 C -0.138 4.138 28 C -0.184 4.184 29 H 0.057 0.943 30 H 0.042 0.958 31 H 0.017 0.983 32 H 0.095 0.905 33 H 0.029 0.971 34 H 0.264 0.736 35 H 0.386 0.614 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.056 0.944 43 H 0.068 0.932 44 H 0.089 0.911 45 H 0.066 0.934 46 H 0.078 0.922 47 H 0.064 0.936 48 H 0.093 0.907 49 H 0.066 0.934 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.190 8.278 13.754 20.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.164 4.164 3 C 0.172 3.828 4 H 0.064 0.936 5 C -0.572 4.572 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.212 1.212 11 H -0.202 1.202 12 H -0.202 1.202 13 N -0.354 5.354 14 C 0.281 3.719 15 O -0.412 6.412 16 C 0.028 3.972 17 H 0.111 0.889 18 C -0.158 4.158 19 C -0.169 4.169 20 C -0.017 4.017 21 N -0.326 5.326 22 C 0.429 3.571 23 O -0.438 6.438 24 O -0.279 6.279 25 C 0.100 3.900 26 C -0.239 4.239 27 C -0.195 4.195 28 C -0.241 4.241 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.036 0.964 32 H 0.114 0.886 33 H 0.048 0.952 34 H 0.074 0.926 35 H 0.218 0.782 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.107 0.893 40 H 0.098 0.902 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.087 0.913 44 H 0.108 0.892 45 H 0.085 0.915 46 H 0.097 0.903 47 H 0.083 0.917 48 H 0.111 0.889 49 H 0.085 0.915 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.761 7.655 12.837 20.316 hybrid contribution 1.268 -0.193 0.129 1.289 sum -12.493 7.462 12.965 19.490 Atomic orbital electron populations 1.21873 0.97967 0.97988 1.01912 1.21901 0.92936 0.99644 1.01914 1.18741 0.93945 0.89229 0.80866 0.93556 1.21205 0.90782 1.39047 1.06209 0.92179 1.24889 0.98485 0.94863 0.95451 1.69904 1.35135 1.37527 1.09325 0.86530 0.85016 0.78234 0.77424 1.21193 1.20230 1.20190 1.46430 1.14492 1.55893 1.18559 1.20368 0.83022 0.79605 0.88928 1.90669 1.51144 1.59297 1.40073 1.21548 0.79095 0.98436 0.98170 0.88853 1.22628 0.98378 0.91754 1.03087 1.22789 0.93772 0.99687 1.00609 1.22310 0.98169 0.79808 1.01418 1.46652 1.04242 1.05464 1.76239 1.17305 0.80265 0.83429 0.76053 1.90929 1.79835 1.18431 1.54634 1.86254 1.15215 1.39574 1.86907 1.22023 0.87355 0.83988 0.96608 1.22512 1.05211 0.99610 0.96597 1.21837 0.92489 1.02147 1.03072 1.22507 1.05551 1.00126 0.95898 0.92425 0.93889 0.96386 0.88642 0.95239 0.92582 0.78171 0.88810 0.89511 0.90311 0.89348 0.90200 0.91072 0.92484 0.91332 0.89233 0.91531 0.90305 0.91739 0.88868 0.91504 0.92174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 8.51 37.16 0.32 -3.15 16 2 C -0.13 -3.23 5.45 -26.73 -0.15 -3.38 16 3 C 0.27 7.06 2.24 -69.09 -0.15 6.90 16 4 H 0.05 1.39 7.58 -51.93 -0.39 0.99 16 5 C -0.53 -14.21 8.73 -34.44 -0.30 -14.51 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -25.15 11.29 55.43 0.63 -24.52 16 9 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 12 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 13 N -0.71 -14.89 5.02 -54.93 -0.28 -15.16 16 14 C 0.50 10.11 4.85 -10.99 -0.05 10.05 16 15 O -0.53 -12.95 13.23 5.56 0.07 -12.87 16 16 C 0.13 2.04 3.26 -68.11 -0.22 1.81 16 17 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 18 C -0.12 -1.33 6.47 -24.90 -0.16 -1.49 16 19 C -0.13 -1.12 7.08 -24.58 -0.17 -1.29 16 20 C 0.11 1.20 6.92 -2.53 -0.02 1.18 16 21 N -0.59 -9.01 2.76 -170.07 -0.47 -9.48 16 22 C 0.67 11.70 7.31 54.05 0.39 12.09 16 23 O -0.55 -10.95 10.73 -19.29 -0.21 -11.15 16 24 O -0.36 -5.52 9.42 -40.32 -0.38 -5.90 16 25 C 0.14 1.76 1.13 -90.62 -0.10 1.66 16 26 C -0.18 -2.20 8.37 37.16 0.31 -1.88 16 27 C -0.14 -1.29 8.85 37.16 0.33 -0.96 16 28 C -0.18 -2.62 8.37 37.15 0.31 -2.30 16 29 H 0.06 1.44 4.68 -51.93 -0.24 1.19 16 30 H 0.04 1.12 7.85 -51.93 -0.41 0.71 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.10 2.70 5.95 -51.93 -0.31 2.39 16 33 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 35 H 0.39 7.04 8.54 -40.82 -0.35 6.69 16 36 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.09 1.09 7.84 -51.93 -0.41 0.68 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.09 0.59 8.14 -51.92 -0.42 0.17 16 40 H 0.08 0.78 8.04 -51.93 -0.42 0.37 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.09 1.34 5.88 -51.93 -0.31 1.03 16 45 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.09 1.68 5.88 -51.93 -0.31 1.38 16 49 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 388.42 15.07 5.85 5.85 Total: -1.00 -33.42 388.42 -8.16 -41.58 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -8.60 Total: 9.49 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: 0.24 Total: 6.45 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: -0.12 Total: -49.16 kcal Atomic # 8 Polarization: -29.42 SS G_CDS: -0.51 Total: -29.93 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.42 -8.16 -41.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183809668.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.695 kcal (2) G-P(sol) polarization free energy of solvation -33.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds