Wall clock time and date at job start Tue Mar 31 2020 15:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47183 * 2 1 4 4 H 1.09005 * 109.47141 * 304.99660 * 3 2 1 5 5 C 1.50694 * 109.47265 * 185.00042 * 3 2 1 6 6 H 1.08002 * 120.00179 * 239.99421 * 5 3 2 7 7 C 1.37879 * 120.00472 * 59.99739 * 5 3 2 8 8 N 1.31514 * 119.99350 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00608 * 179.97438 * 7 5 3 10 10 H 1.48490 * 109.47339 * 179.97438 * 9 7 5 11 11 H 1.48493 * 109.47239 * 300.00306 * 9 7 5 12 12 H 1.48504 * 109.46636 * 59.99865 * 9 7 5 13 13 N 1.46500 * 109.47436 * 64.99278 * 3 2 1 14 14 C 1.34774 * 120.00476 * 275.00648 * 13 3 2 15 15 O 1.21276 * 119.99690 * 359.97438 * 14 13 3 16 16 C 1.50701 * 120.00074 * 179.97438 * 14 13 3 17 17 H 1.09004 * 109.87145 * 318.98507 * 16 14 13 18 18 C 1.54323 * 109.88206 * 79.99627 * 16 14 13 19 19 C 1.55156 * 102.93690 * 141.61190 * 18 16 14 20 20 C 1.54907 * 101.58268 * 324.49639 * 19 18 16 21 21 N 1.47020 * 109.88065 * 197.80989 * 16 14 13 22 22 C 1.34773 * 125.65124 * 61.59136 * 21 16 14 23 23 O 1.21515 * 119.99969 * 0.02562 * 22 21 16 24 24 O 1.34638 * 119.99798 * 179.97438 * 22 21 16 25 25 C 1.45205 * 116.99566 * 180.02562 * 24 22 21 26 26 C 1.53002 * 109.47207 * 60.00598 * 25 24 22 27 27 C 1.53004 * 109.46656 * 180.02562 * 25 24 22 28 28 C 1.52991 * 109.47325 * 300.00293 * 25 24 22 29 29 H 1.09000 * 109.46964 * 300.00053 * 1 2 3 30 30 H 1.08997 * 109.47414 * 60.00416 * 1 2 3 31 31 H 1.09006 * 109.46777 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47402 * 239.99392 * 2 1 3 33 33 H 1.09005 * 109.47290 * 119.99877 * 2 1 3 34 34 H 0.97005 * 119.99661 * 179.97438 * 8 7 5 35 35 H 0.97008 * 119.99239 * 95.00725 * 13 3 2 36 36 H 1.09003 * 110.72223 * 259.97224 * 18 16 14 37 37 H 1.08996 * 110.71853 * 23.25098 * 18 16 14 38 38 H 1.08996 * 111.00658 * 82.57843 * 19 18 16 39 39 H 1.09010 * 111.00227 * 206.38451 * 19 18 16 40 40 H 1.09007 * 110.36558 * 155.84956 * 20 19 18 41 41 H 1.08997 * 110.36705 * 278.05927 * 20 19 18 42 42 H 1.09004 * 109.47019 * 59.99483 * 26 25 24 43 43 H 1.09000 * 109.47136 * 179.97438 * 26 25 24 44 44 H 1.09004 * 109.47156 * 300.00000 * 26 25 24 45 45 H 1.08997 * 109.47140 * 60.00394 * 27 25 24 46 46 H 1.09000 * 109.46910 * 180.02562 * 27 25 24 47 47 H 1.08996 * 109.47483 * 299.99745 * 27 25 24 48 48 H 1.09000 * 109.47240 * 60.00261 * 28 25 24 49 49 H 1.09000 * 109.47141 * 180.02562 * 28 25 24 50 50 H 1.08998 * 109.47595 * 300.00504 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5418 1.4443 -0.1238 6 1 4.1471 1.8890 0.6522 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3365 -2.1728 9 14 6.0049 0.8813 -1.3818 10 1 6.3978 0.2167 -2.6502 11 1 6.4994 2.2814 -1.3822 12 1 6.5975 0.1474 -0.2348 13 7 1.6523 2.0976 1.2517 14 6 0.4350 2.6645 1.3668 15 8 -0.3393 2.6326 0.4340 16 6 0.0361 3.3378 2.6547 17 1 0.3770 2.7452 3.5037 18 6 0.6518 4.7514 2.7204 19 6 -0.4769 5.5918 3.3739 20 6 -1.7433 4.9329 2.7725 21 7 -1.4248 3.4951 2.7050 22 6 -2.3239 2.4912 2.6906 23 8 -1.9459 1.3378 2.6323 24 8 -3.6409 2.7662 2.7420 25 6 -4.5516 1.6354 2.7233 26 6 -4.2723 0.7356 3.9288 27 6 -5.9941 2.1414 2.7873 28 6 -4.3481 0.8379 1.4336 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8293 -0.0613 -2.9497 35 1 2.2719 2.1233 1.9977 36 1 1.5454 4.7542 3.3446 37 1 0.8775 5.1206 1.7200 38 1 -0.4614 5.4902 4.4590 39 1 -0.4040 6.6392 3.0807 40 1 -2.6029 5.1009 3.4214 41 1 -1.9389 5.3271 1.7754 42 1 -4.4173 1.3039 4.8477 43 1 -4.9562 -0.1130 3.9150 44 1 -3.2446 0.3753 3.8829 45 1 -6.1929 2.7822 1.9283 46 1 -6.6778 1.2926 2.7737 47 1 -6.1394 2.7098 3.7059 48 1 -3.3204 0.4775 1.3876 49 1 -5.0321 -0.0106 1.4194 50 1 -4.5470 1.4789 0.5748 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183809668.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:29 Heat of formation + Delta-G solvation = -141.640312 kcal Electronic energy + Delta-G solvation = -30427.066327 eV Core-core repulsion = 26453.499703 eV Total energy + Delta-G solvation = -3973.566624 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.03315 -40.85760 -39.03752 -37.49930 -36.79524 -35.08485 -34.31018 -32.99726 -32.39009 -30.55599 -28.74469 -28.38408 -28.28657 -25.62610 -24.97330 -23.27959 -22.59807 -21.65162 -21.09928 -20.35398 -19.31459 -18.66656 -18.04832 -17.55935 -17.14896 -16.89120 -16.43754 -16.23658 -16.01987 -15.49656 -15.29780 -14.99331 -14.62611 -14.57727 -14.28008 -14.11066 -13.69941 -13.55701 -13.51456 -13.33404 -13.19485 -13.09329 -12.91161 -12.88348 -12.85617 -12.70178 -12.64401 -12.41318 -12.25843 -12.18529 -12.16214 -12.05575 -11.77735 -11.60053 -11.37533 -11.08262 -11.04725 -10.76289 -10.51677 -9.73083 -9.61804 -8.15094 -6.33373 0.99390 1.44883 1.47475 1.55135 1.80054 1.88021 2.36586 2.62770 2.98081 3.13959 3.53364 3.59284 3.75876 3.79122 3.93310 3.94250 4.11860 4.18808 4.43719 4.48842 4.51007 4.55063 4.59290 4.68893 4.72265 4.74232 4.75799 4.81832 4.85496 4.87675 4.88918 5.04629 5.07846 5.10671 5.20689 5.23568 5.28437 5.30704 5.37286 5.41976 5.48062 5.55129 5.63329 5.77278 5.92380 6.15150 6.41602 6.74925 6.99979 7.31365 7.34407 7.61241 8.90251 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.016846 B = 0.003690 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.719252 B = 7585.248003 C = 8792.145615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.117 4.117 3 C 0.285 3.715 4 H -0.006 1.006 5 C -0.547 4.547 6 H 0.076 0.924 7 C 0.013 3.987 8 N -0.918 5.918 9 Si 0.973 3.027 10 H -0.289 1.289 11 H -0.267 1.267 12 H -0.264 1.264 13 N -0.703 5.703 14 C 0.493 3.507 15 O -0.581 6.581 16 C 0.137 3.863 17 H 0.109 0.891 18 C -0.115 4.115 19 C -0.111 4.111 20 C 0.096 3.904 21 N -0.591 5.591 22 C 0.664 3.336 23 O -0.585 6.585 24 O -0.364 6.364 25 C 0.126 3.874 26 C -0.175 4.175 27 C -0.131 4.131 28 C -0.180 4.180 29 H 0.055 0.945 30 H 0.016 0.984 31 H 0.031 0.969 32 H 0.070 0.930 33 H 0.035 0.965 34 H 0.264 0.736 35 H 0.403 0.597 36 H 0.126 0.874 37 H 0.068 0.932 38 H 0.103 0.897 39 H 0.115 0.885 40 H 0.099 0.901 41 H 0.058 0.942 42 H 0.070 0.930 43 H 0.090 0.910 44 H 0.055 0.945 45 H 0.064 0.936 46 H 0.103 0.897 47 H 0.078 0.922 48 H 0.049 0.951 49 H 0.092 0.908 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.061 9.843 16.553 23.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.156 4.156 3 C 0.181 3.819 4 H 0.012 0.988 5 C -0.585 4.585 6 H 0.094 0.906 7 C -0.187 4.187 8 N -0.556 5.556 9 Si 0.798 3.202 10 H -0.214 1.214 11 H -0.192 1.192 12 H -0.189 1.189 13 N -0.352 5.352 14 C 0.278 3.722 15 O -0.461 6.461 16 C 0.030 3.970 17 H 0.127 0.873 18 C -0.153 4.153 19 C -0.149 4.149 20 C -0.025 4.025 21 N -0.331 5.331 22 C 0.419 3.581 23 O -0.475 6.475 24 O -0.279 6.279 25 C 0.089 3.911 26 C -0.232 4.232 27 C -0.187 4.187 28 C -0.238 4.238 29 H 0.074 0.926 30 H 0.035 0.965 31 H 0.050 0.950 32 H 0.088 0.912 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.238 0.762 36 H 0.145 0.855 37 H 0.086 0.914 38 H 0.121 0.879 39 H 0.134 0.866 40 H 0.117 0.883 41 H 0.076 0.924 42 H 0.089 0.911 43 H 0.109 0.891 44 H 0.074 0.926 45 H 0.083 0.917 46 H 0.121 0.879 47 H 0.097 0.903 48 H 0.068 0.932 49 H 0.111 0.889 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.637 9.268 15.687 22.759 hybrid contribution 1.130 -0.702 -0.792 1.548 sum -12.507 8.566 14.895 21.252 Atomic orbital electron populations 1.21670 0.97364 0.98336 1.00486 1.21765 0.93240 0.99774 1.00822 1.18266 0.93715 0.88591 0.81337 0.98814 1.21559 0.91157 1.38998 1.06772 0.90584 1.25839 1.03563 0.94308 0.94993 1.70074 1.37266 1.38368 1.09907 0.85379 0.78772 0.78616 0.77454 1.21427 1.19226 1.18913 1.46187 1.15550 1.55906 1.17581 1.21368 0.81842 0.78586 0.90382 1.90646 1.52266 1.60821 1.42354 1.21680 0.79661 1.00724 0.94912 0.87333 1.22717 1.00341 0.89097 1.03189 1.22819 0.90272 1.00199 1.01595 1.22605 1.00690 0.77666 1.01571 1.46937 1.04075 1.06834 1.75259 1.17656 0.81089 0.83481 0.75858 1.90908 1.80506 1.20015 1.56075 1.86267 1.14439 1.40596 1.86588 1.22414 0.88842 0.83864 0.95950 1.22436 1.03672 1.00362 0.96774 1.21854 0.89884 1.03244 1.03757 1.22456 1.03424 1.01131 0.96739 0.92607 0.96466 0.95003 0.91164 0.94591 0.92696 0.76240 0.85535 0.91366 0.87857 0.86646 0.88319 0.92370 0.91055 0.89110 0.92563 0.91675 0.87871 0.90298 0.93176 0.88911 0.93179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.34 8.51 71.98 0.61 -5.72 16 2 C -0.12 -6.30 5.45 30.59 0.17 -6.14 16 3 C 0.28 15.27 2.24 44.24 0.10 15.37 16 4 H -0.01 -0.38 7.58 -2.38 -0.02 -0.40 16 5 C -0.55 -29.41 8.73 25.60 0.22 -29.19 16 6 H 0.08 3.75 7.74 -2.91 -0.02 3.73 16 7 C 0.01 0.70 5.29 84.66 0.45 1.15 16 8 N -0.92 -54.11 11.29 21.45 0.24 -53.86 16 9 Si 0.97 42.49 29.54 68.60 2.03 44.52 16 10 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 11 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 12 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 13 N -0.70 -30.29 5.02 -446.11 -2.24 -32.53 16 14 C 0.49 20.58 4.85 87.66 0.43 21.00 16 15 O -0.58 -29.78 13.23 -3.02 -0.04 -29.82 16 16 C 0.14 4.05 3.26 44.60 0.15 4.19 16 17 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 18 C -0.12 -2.27 6.47 31.78 0.21 -2.06 16 19 C -0.11 -1.49 7.08 31.99 0.23 -1.26 16 20 C 0.10 2.02 6.92 86.85 0.60 2.62 16 21 N -0.59 -17.96 2.76 -922.38 -2.54 -20.51 16 22 C 0.66 23.47 7.31 129.79 0.95 24.42 16 23 O -0.58 -24.29 10.73 19.80 0.21 -24.08 16 24 O -0.36 -11.01 9.42 -55.48 -0.52 -11.53 16 25 C 0.13 3.16 1.13 -10.79 -0.01 3.15 16 26 C -0.18 -4.07 8.37 71.98 0.60 -3.47 16 27 C -0.13 -2.13 8.85 71.98 0.64 -1.49 16 28 C -0.18 -5.29 8.37 71.98 0.60 -4.69 16 29 H 0.06 2.93 4.68 -2.39 -0.01 2.92 16 30 H 0.02 0.93 7.85 -2.39 -0.02 0.91 16 31 H 0.03 1.51 8.14 -2.38 -0.02 1.49 16 32 H 0.07 4.16 5.95 -2.39 -0.01 4.15 16 33 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 34 H 0.26 14.78 8.31 -92.70 -0.77 14.01 16 35 H 0.40 14.49 8.54 -92.70 -0.79 13.70 16 36 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.07 1.62 7.84 -2.39 -0.02 1.61 16 38 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.12 1.02 8.14 -2.38 -0.02 1.00 16 40 H 0.10 1.70 8.04 -2.38 -0.02 1.68 16 41 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.06 1.72 5.88 -2.39 -0.01 1.70 16 45 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.05 1.93 5.88 -2.39 -0.01 1.91 16 49 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 50 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -78.78 388.42 3.21 -75.57 By element: Atomic # 1 Polarization: 34.21 SS G_CDS: 0.14 Total: 34.35 kcal Atomic # 6 Polarization: 11.95 SS G_CDS: 5.93 Total: 17.88 kcal Atomic # 7 Polarization: -102.36 SS G_CDS: -4.54 Total: -106.90 kcal Atomic # 8 Polarization: -65.07 SS G_CDS: -0.35 Total: -65.42 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -78.78 3.21 -75.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183809668.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.067 kcal (2) G-P(sol) polarization free energy of solvation -78.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds