Wall clock time and date at job start Tue Mar 31 2020 15:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47155 * 2 1 4 4 H 1.09007 * 109.46641 * 55.00602 * 3 2 1 5 5 C 1.50697 * 109.46811 * 174.99949 * 3 2 1 6 6 H 1.08011 * 119.99571 * 120.00749 * 5 3 2 7 7 C 1.37871 * 120.00501 * 299.99850 * 5 3 2 8 8 N 1.31515 * 119.99867 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00050 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.47082 * 90.00754 * 9 7 5 11 11 H 1.48501 * 109.47111 * 210.00281 * 9 7 5 12 12 H 1.48494 * 109.47432 * 330.00650 * 9 7 5 13 13 N 1.46499 * 109.47070 * 295.00511 * 3 2 1 14 14 C 1.34777 * 120.00199 * 85.00207 * 13 3 2 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 3 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 3 17 17 C 1.52996 * 109.47159 * 179.72352 * 16 14 13 18 18 C 1.53944 * 113.73964 * 273.74271 * 17 16 14 19 19 N 1.47815 * 86.03640 * 222.08157 * 18 17 16 20 20 C 1.34777 * 134.46164 * 204.64314 * 19 18 17 21 21 O 1.21509 * 120.00034 * 179.86627 * 20 19 18 22 22 O 1.34633 * 119.99635 * 359.86426 * 20 19 18 23 23 C 1.45200 * 116.99989 * 179.97438 * 22 20 19 24 24 C 1.53005 * 109.47101 * 60.00347 * 23 22 20 25 25 C 1.53000 * 109.47052 * 180.02562 * 23 22 20 26 26 C 1.52999 * 109.46978 * 300.00072 * 23 22 20 27 27 C 1.47583 * 91.04788 * 24.54754 * 19 18 17 28 28 H 1.09005 * 109.47275 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46996 * 299.99254 * 1 2 3 30 30 H 1.08994 * 109.47555 * 59.99581 * 1 2 3 31 31 H 1.09001 * 109.46482 * 240.00197 * 2 1 3 32 32 H 1.08999 * 109.47118 * 120.00214 * 2 1 3 33 33 H 0.96999 * 119.99893 * 179.97438 * 8 7 5 34 34 H 0.97000 * 119.99484 * 264.99304 * 13 3 2 35 35 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 36 36 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 37 37 H 1.09003 * 112.94566 * 45.32414 * 17 16 14 38 38 H 1.09002 * 113.77114 * 336.34319 * 18 17 16 39 39 H 1.08996 * 113.77717 * 107.74535 * 18 17 16 40 40 H 1.08999 * 109.47091 * 59.99800 * 24 23 22 41 41 H 1.08995 * 109.46621 * 180.02562 * 24 23 22 42 42 H 1.08994 * 109.46426 * 300.00049 * 24 23 22 43 43 H 1.09001 * 109.47661 * 59.99918 * 25 23 22 44 44 H 1.09003 * 109.47070 * 180.02562 * 25 23 22 45 45 H 1.09003 * 109.47379 * 299.99485 * 25 23 22 46 46 H 1.09001 * 109.47081 * 60.00141 * 26 23 22 47 47 H 1.09003 * 109.46669 * 179.97438 * 26 23 22 48 48 H 1.09001 * 109.46998 * 299.99631 * 26 23 22 49 49 H 1.08998 * 113.76726 * 221.15347 * 27 19 18 50 50 H 1.08999 * 113.76764 * 89.75563 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4063 0.3366 2.1728 9 14 6.0050 0.8799 1.3809 10 1 6.4429 2.1128 2.0836 11 1 6.4391 -0.3112 2.1543 12 1 6.6131 0.8394 0.0268 13 7 1.6524 2.0975 -1.2517 14 6 0.4351 2.6645 -1.3668 15 8 -0.3396 2.6320 -0.4342 16 6 0.0340 3.3328 -2.6566 17 6 -1.3870 3.8843 -2.5249 18 6 -2.4839 2.8564 -2.8565 19 7 -3.1569 3.9592 -3.5747 20 6 -4.4338 4.2233 -3.9156 21 8 -4.7025 5.2412 -4.5223 22 8 -5.4115 3.3592 -3.5840 23 6 -6.7632 3.7084 -3.9830 24 6 -6.8281 3.8376 -5.5062 25 6 -7.7295 2.6155 -3.5218 26 6 -7.1564 5.0403 -3.3409 27 6 -1.8700 4.6559 -3.7663 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.8294 -0.0619 2.9494 34 1 2.2719 2.1232 -1.9977 35 1 0.7225 4.1501 -2.8716 36 1 0.0680 2.6061 -3.4682 37 1 -1.5518 4.4146 -1.5869 38 1 -2.1474 2.0492 -3.5072 39 1 -3.0312 2.5006 -1.9836 40 1 -6.5479 2.8888 -5.9636 41 1 -7.8427 4.1002 -5.8056 42 1 -6.1397 4.6164 -5.8343 43 1 -7.6833 2.5237 -2.4367 44 1 -8.7442 2.8774 -3.8217 45 1 -7.4496 1.6664 -3.9790 46 1 -6.4681 5.8191 -3.6691 47 1 -8.1710 5.3026 -3.6408 48 1 -7.1103 4.9481 -2.2558 49 1 -1.9279 5.7342 -3.6183 50 1 -1.3527 4.3784 -4.6847 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183904649.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:05 Heat of formation + Delta-G solvation = -95.013670 kcal Electronic energy + Delta-G solvation = -28452.101657 eV Core-core repulsion = 24480.556915 eV Total energy + Delta-G solvation = -3971.544742 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.96746 -39.75180 -38.56615 -36.63352 -35.06844 -34.20688 -32.44634 -31.78257 -30.71356 -27.80284 -27.63731 -27.59962 -26.55049 -26.34002 -23.16546 -22.32567 -20.80637 -19.92687 -19.35081 -19.30724 -17.84789 -17.24154 -16.83252 -16.41591 -15.71709 -15.69024 -15.38819 -14.93033 -14.84731 -14.41673 -14.21269 -14.03743 -13.43796 -13.25264 -12.89576 -12.74663 -12.71059 -12.51799 -12.43416 -12.26762 -12.11522 -12.08100 -11.72809 -11.66371 -11.46109 -11.33349 -11.30462 -11.21711 -10.97509 -10.86315 -10.74354 -10.53700 -10.33621 -10.18615 -10.08520 -9.64499 -9.07800 -8.97896 -8.90346 -8.51266 -7.83157 -6.14270 -4.23737 1.87228 2.76193 3.22663 3.29786 3.30996 3.39175 3.59799 3.96071 4.30231 4.44297 4.49042 4.53378 4.67145 4.79922 4.88652 5.07217 5.17180 5.20293 5.22609 5.26849 5.29649 5.38244 5.44712 5.49720 5.53309 5.59926 5.62176 5.68759 5.74350 5.77719 5.82443 6.05063 6.09987 6.24592 6.37277 6.37555 6.43760 6.64392 7.01742 7.18280 7.35297 7.44767 7.55721 7.60240 7.71803 7.88774 8.17010 8.23298 8.66227 8.76227 9.13244 9.44029 10.90942 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.029387 B = 0.002166 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.589059 B =12921.067616 C =13490.584032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.049 0.951 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.710 5.710 14 C 0.499 3.501 15 O -0.548 6.548 16 C -0.136 4.136 17 C -0.100 4.100 18 C 0.116 3.884 19 N -0.634 5.634 20 C 0.673 3.327 21 O -0.575 6.575 22 O -0.360 6.360 23 C 0.134 3.866 24 C -0.182 4.182 25 C -0.141 4.141 26 C -0.183 4.183 27 C 0.134 3.866 28 H 0.021 0.979 29 H 0.049 0.951 30 H 0.039 0.961 31 H 0.030 0.970 32 H 0.098 0.902 33 H 0.264 0.736 34 H 0.388 0.612 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.116 0.884 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.059 0.941 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.067 0.933 44 H 0.079 0.921 45 H 0.066 0.934 46 H 0.087 0.913 47 H 0.069 0.931 48 H 0.060 0.940 49 H 0.086 0.914 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.617 5.314 -13.942 21.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.357 5.357 14 C 0.284 3.716 15 O -0.427 6.427 16 C -0.177 4.177 17 C -0.119 4.119 18 C -0.007 4.007 19 N -0.376 5.376 20 C 0.430 3.570 21 O -0.465 6.465 22 O -0.275 6.275 23 C 0.098 3.902 24 C -0.239 4.239 25 C -0.198 4.198 26 C -0.240 4.240 27 C 0.013 3.987 28 H 0.040 0.960 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.116 0.884 33 H 0.074 0.926 34 H 0.220 0.780 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.134 0.866 38 H 0.104 0.896 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.105 0.895 43 H 0.086 0.914 44 H 0.098 0.902 45 H 0.085 0.915 46 H 0.106 0.894 47 H 0.088 0.912 48 H 0.079 0.921 49 H 0.104 0.896 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.535 5.511 -13.313 21.932 hybrid contribution 1.257 -0.114 -0.334 1.305 sum -15.278 5.397 -13.647 21.185 Atomic orbital electron populations 1.21831 0.98323 0.97970 1.01215 1.21930 0.92626 0.99868 1.02212 1.18762 0.94109 0.89160 0.81139 0.93356 1.21238 0.90814 1.38979 1.06243 0.92135 1.24887 0.98558 0.94832 0.95441 1.69893 1.35113 1.37583 1.09344 0.86470 0.84932 0.77643 0.78169 1.20591 1.21104 1.19883 1.46512 1.14753 1.55953 1.18510 1.20270 0.82790 0.79476 0.89049 1.90679 1.51420 1.59884 1.40726 1.21667 0.96535 1.01573 0.97950 1.22903 0.93133 0.96899 0.99005 1.23397 0.90754 0.90885 0.95620 1.48759 1.02525 1.26874 1.59436 1.17524 0.80657 0.81527 0.77294 1.90876 1.82000 1.28151 1.45475 1.86338 1.17053 1.48673 1.75442 1.22071 0.77283 0.95891 0.94988 1.22506 1.03685 1.03635 0.94119 1.21857 0.97460 0.97836 1.02625 1.22517 1.02947 0.97520 1.01052 1.23324 0.78237 0.98834 0.98318 0.95970 0.93184 0.94225 0.95119 0.88391 0.92574 0.78001 0.88555 0.89033 0.86619 0.89564 0.89181 0.92235 0.91202 0.89471 0.91356 0.90193 0.91476 0.89437 0.91230 0.92088 0.89566 0.89327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.51 37.16 0.32 -2.56 16 2 C -0.13 -2.97 5.45 -26.73 -0.15 -3.12 16 3 C 0.27 6.45 2.24 -69.08 -0.15 6.29 16 4 H 0.05 1.35 7.58 -51.93 -0.39 0.96 16 5 C -0.53 -13.59 8.73 -34.44 -0.30 -13.89 16 6 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 7 C 0.07 1.73 5.29 -17.82 -0.09 1.63 16 8 N -0.88 -24.19 11.29 55.43 0.63 -23.56 16 9 Si 0.90 20.15 29.54 -169.99 -5.02 15.12 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 13 N -0.71 -13.29 5.02 -54.93 -0.28 -13.56 16 14 C 0.50 8.49 6.40 -10.98 -0.07 8.42 16 15 O -0.55 -11.31 12.93 5.55 0.07 -11.23 16 16 C -0.14 -1.50 5.54 -27.88 -0.15 -1.66 16 17 C -0.10 -1.11 3.29 -89.70 -0.30 -1.41 16 18 C 0.12 1.34 8.45 -2.84 -0.02 1.32 16 19 N -0.63 -7.96 3.61 -183.98 -0.66 -8.62 16 20 C 0.67 9.58 8.22 54.06 0.44 10.02 16 21 O -0.57 -9.01 12.61 -19.28 -0.24 -9.25 16 22 O -0.36 -4.78 9.87 -40.31 -0.40 -5.18 16 23 C 0.13 1.41 1.13 -90.62 -0.10 1.31 16 24 C -0.18 -1.78 8.37 37.16 0.31 -1.47 16 25 C -0.14 -1.11 8.85 37.16 0.33 -0.78 16 26 C -0.18 -1.86 8.37 37.16 0.31 -1.54 16 27 C 0.13 1.32 8.41 -2.97 -0.02 1.30 16 28 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 1.14 7.85 -51.93 -0.41 0.73 16 30 H 0.04 0.79 5.64 -51.93 -0.29 0.49 16 31 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.10 2.56 5.95 -51.93 -0.31 2.25 16 33 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 34 H 0.39 6.22 8.54 -40.82 -0.35 5.87 16 35 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.09 0.82 7.88 -51.93 -0.41 0.41 16 37 H 0.12 1.50 7.74 -51.93 -0.40 1.10 16 38 H 0.09 0.88 7.92 -51.93 -0.41 0.47 16 39 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.09 1.05 5.88 -51.93 -0.31 0.74 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.09 1.09 5.88 -51.93 -0.31 0.78 16 47 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 48 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 50 H 0.09 0.70 8.10 -51.93 -0.42 0.28 16 LS Contribution 396.15 15.07 5.97 5.97 Total: -1.00 -31.31 396.15 -8.21 -39.52 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -8.62 Total: 6.92 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: 0.35 Total: 3.87 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: -0.31 Total: -45.74 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.57 Total: -25.66 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.31 -8.21 -39.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183904649.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.497 kcal (2) G-P(sol) polarization free energy of solvation -31.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds