Wall clock time and date at job start Tue Mar 31 2020 15:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47155 * 2 1 4 4 H 1.09007 * 109.46641 * 55.00602 * 3 2 1 5 5 C 1.50697 * 109.46811 * 174.99949 * 3 2 1 6 6 H 1.08011 * 119.99571 * 120.00749 * 5 3 2 7 7 C 1.37871 * 120.00501 * 299.99850 * 5 3 2 8 8 N 1.31515 * 119.99867 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00050 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.47082 * 90.00754 * 9 7 5 11 11 H 1.48501 * 109.47111 * 210.00281 * 9 7 5 12 12 H 1.48494 * 109.47432 * 330.00650 * 9 7 5 13 13 N 1.46499 * 109.47070 * 295.00511 * 3 2 1 14 14 C 1.34777 * 120.00199 * 85.00207 * 13 3 2 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 3 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 3 17 17 C 1.52996 * 109.47159 * 179.72352 * 16 14 13 18 18 C 1.53944 * 113.73964 * 273.74271 * 17 16 14 19 19 N 1.47815 * 86.03640 * 222.08157 * 18 17 16 20 20 C 1.34777 * 134.46164 * 204.64314 * 19 18 17 21 21 O 1.21509 * 120.00034 * 179.86627 * 20 19 18 22 22 O 1.34633 * 119.99635 * 359.86426 * 20 19 18 23 23 C 1.45200 * 116.99989 * 179.97438 * 22 20 19 24 24 C 1.53005 * 109.47101 * 60.00347 * 23 22 20 25 25 C 1.53000 * 109.47052 * 180.02562 * 23 22 20 26 26 C 1.52999 * 109.46978 * 300.00072 * 23 22 20 27 27 C 1.47583 * 91.04788 * 24.54754 * 19 18 17 28 28 H 1.09005 * 109.47275 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46996 * 299.99254 * 1 2 3 30 30 H 1.08994 * 109.47555 * 59.99581 * 1 2 3 31 31 H 1.09001 * 109.46482 * 240.00197 * 2 1 3 32 32 H 1.08999 * 109.47118 * 120.00214 * 2 1 3 33 33 H 0.96999 * 119.99893 * 179.97438 * 8 7 5 34 34 H 0.97000 * 119.99484 * 264.99304 * 13 3 2 35 35 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 36 36 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 37 37 H 1.09003 * 112.94566 * 45.32414 * 17 16 14 38 38 H 1.09002 * 113.77114 * 336.34319 * 18 17 16 39 39 H 1.08996 * 113.77717 * 107.74535 * 18 17 16 40 40 H 1.08999 * 109.47091 * 59.99800 * 24 23 22 41 41 H 1.08995 * 109.46621 * 180.02562 * 24 23 22 42 42 H 1.08994 * 109.46426 * 300.00049 * 24 23 22 43 43 H 1.09001 * 109.47661 * 59.99918 * 25 23 22 44 44 H 1.09003 * 109.47070 * 180.02562 * 25 23 22 45 45 H 1.09003 * 109.47379 * 299.99485 * 25 23 22 46 46 H 1.09001 * 109.47081 * 60.00141 * 26 23 22 47 47 H 1.09003 * 109.46669 * 179.97438 * 26 23 22 48 48 H 1.09001 * 109.46998 * 299.99631 * 26 23 22 49 49 H 1.08998 * 113.76726 * 221.15347 * 27 19 18 50 50 H 1.08999 * 113.76764 * 89.75563 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4063 0.3366 2.1728 9 14 6.0050 0.8799 1.3809 10 1 6.4429 2.1128 2.0836 11 1 6.4391 -0.3112 2.1543 12 1 6.6131 0.8394 0.0268 13 7 1.6524 2.0975 -1.2517 14 6 0.4351 2.6645 -1.3668 15 8 -0.3396 2.6320 -0.4342 16 6 0.0340 3.3328 -2.6566 17 6 -1.3870 3.8843 -2.5249 18 6 -2.4839 2.8564 -2.8565 19 7 -3.1569 3.9592 -3.5747 20 6 -4.4338 4.2233 -3.9156 21 8 -4.7025 5.2412 -4.5223 22 8 -5.4115 3.3592 -3.5840 23 6 -6.7632 3.7084 -3.9830 24 6 -6.8281 3.8376 -5.5062 25 6 -7.7295 2.6155 -3.5218 26 6 -7.1564 5.0403 -3.3409 27 6 -1.8700 4.6559 -3.7663 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.8294 -0.0619 2.9494 34 1 2.2719 2.1232 -1.9977 35 1 0.7225 4.1501 -2.8716 36 1 0.0680 2.6061 -3.4682 37 1 -1.5518 4.4146 -1.5869 38 1 -2.1474 2.0492 -3.5072 39 1 -3.0312 2.5006 -1.9836 40 1 -6.5479 2.8888 -5.9636 41 1 -7.8427 4.1002 -5.8056 42 1 -6.1397 4.6164 -5.8343 43 1 -7.6833 2.5237 -2.4367 44 1 -8.7442 2.8774 -3.8217 45 1 -7.4496 1.6664 -3.9790 46 1 -6.4681 5.8191 -3.6691 47 1 -8.1710 5.3026 -3.6408 48 1 -7.1103 4.9481 -2.2558 49 1 -1.9279 5.7342 -3.6183 50 1 -1.3527 4.3784 -4.6847 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183904649.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:04 Heat of formation + Delta-G solvation = -115.122007 kcal Electronic energy + Delta-G solvation = -28452.973620 eV Core-core repulsion = 24480.556915 eV Total energy + Delta-G solvation = -3972.416704 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.93261 -40.88254 -39.81860 -37.64148 -36.80070 -35.07354 -34.21631 -33.14784 -32.17492 -29.24914 -28.38092 -28.32121 -27.99203 -27.22186 -24.96683 -23.40772 -22.11583 -21.21405 -20.82552 -20.25274 -18.91707 -18.73672 -17.75562 -17.48994 -17.28732 -17.07156 -16.60350 -16.19326 -16.08589 -15.64961 -15.26853 -15.10709 -14.59695 -14.46943 -14.40833 -13.97261 -13.68807 -13.50500 -13.37265 -13.30704 -13.14792 -13.09362 -12.92543 -12.88529 -12.83216 -12.70400 -12.62518 -12.54903 -12.25233 -12.14704 -12.12321 -11.94658 -11.65380 -11.50894 -11.41064 -11.07111 -10.98607 -10.55504 -10.38385 -9.83903 -9.49057 -8.12297 -6.28885 0.99464 1.46497 1.47208 1.57173 1.72690 2.05069 2.40095 2.70903 2.77314 3.17338 3.43934 3.73308 3.78159 3.88033 3.93051 3.93812 4.18327 4.26005 4.49774 4.54810 4.56194 4.59534 4.59984 4.61336 4.65226 4.70995 4.74166 4.77128 4.81258 4.85364 4.85989 4.90617 4.96188 5.09990 5.14456 5.25800 5.30900 5.34162 5.34951 5.47779 5.51353 5.62702 5.73590 5.87875 6.02075 6.24594 6.58097 6.81599 7.15598 7.22295 7.39503 7.76861 8.92632 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.029387 B = 0.002166 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.589059 B =12921.067616 C =13490.584032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.121 4.121 3 C 0.278 3.722 4 H -0.005 1.005 5 C -0.544 4.544 6 H 0.073 0.927 7 C 0.013 3.987 8 N -0.916 5.916 9 Si 0.966 3.034 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.259 1.259 13 N -0.709 5.709 14 C 0.494 3.506 15 O -0.589 6.589 16 C -0.118 4.118 17 C -0.095 4.095 18 C 0.114 3.886 19 N -0.641 5.641 20 C 0.664 3.336 21 O -0.596 6.596 22 O -0.373 6.373 23 C 0.120 3.880 24 C -0.176 4.176 25 C -0.136 4.136 26 C -0.179 4.179 27 C 0.141 3.859 28 H 0.041 0.959 29 H 0.022 0.978 30 H 0.052 0.948 31 H 0.041 0.959 32 H 0.066 0.934 33 H 0.263 0.737 34 H 0.404 0.596 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.090 0.910 38 H 0.109 0.891 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.093 0.907 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.106 0.894 45 H 0.068 0.932 46 H 0.061 0.939 47 H 0.094 0.906 48 H 0.055 0.945 49 H 0.088 0.912 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.355 5.305 -16.588 23.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C 0.174 3.826 4 H 0.013 0.987 5 C -0.583 4.583 6 H 0.091 0.909 7 C -0.187 4.187 8 N -0.555 5.555 9 Si 0.792 3.208 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.183 1.183 13 N -0.358 5.358 14 C 0.281 3.719 15 O -0.471 6.471 16 C -0.158 4.158 17 C -0.115 4.115 18 C -0.008 4.008 19 N -0.383 5.383 20 C 0.421 3.579 21 O -0.488 6.488 22 O -0.288 6.288 23 C 0.084 3.916 24 C -0.233 4.233 25 C -0.193 4.193 26 C -0.236 4.236 27 C 0.021 3.979 28 H 0.060 0.940 29 H 0.041 0.959 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.239 0.761 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.108 0.892 38 H 0.126 0.874 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.112 0.888 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.124 0.876 45 H 0.087 0.913 46 H 0.080 0.920 47 H 0.113 0.887 48 H 0.075 0.925 49 H 0.106 0.894 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -16.261 5.514 -15.999 23.469 hybrid contribution 1.102 -0.082 0.526 1.224 sum -15.159 5.432 -15.473 22.332 Atomic orbital electron populations 1.21666 0.96806 0.98928 1.00482 1.21772 0.93884 0.99317 1.01047 1.18280 0.93270 0.89120 0.81910 0.98682 1.21631 0.91794 1.38404 1.06437 0.90935 1.25757 1.03025 0.94631 0.95258 1.70056 1.36918 1.38601 1.09903 0.85430 0.79580 0.77230 0.78588 1.20620 1.21314 1.18333 1.46272 1.16049 1.56229 1.17283 1.21316 0.81439 0.78436 0.90661 1.90678 1.52419 1.61068 1.42901 1.21637 0.96519 1.02765 0.94916 1.22728 0.93186 0.96841 0.98704 1.23498 0.90517 0.91436 0.95338 1.48980 1.02733 1.27498 1.59084 1.17757 0.81257 0.81500 0.77367 1.90860 1.82447 1.28962 1.46536 1.86343 1.18104 1.48783 1.75555 1.22472 0.76566 0.96919 0.95639 1.22441 1.04476 1.02841 0.93534 1.21887 0.98028 0.97012 1.02355 1.22468 1.03708 0.96718 1.00681 1.23481 0.76893 0.98761 0.98724 0.94043 0.95901 0.92905 0.94040 0.91599 0.92806 0.76072 0.85455 0.85482 0.89162 0.87350 0.91269 0.91998 0.88787 0.91983 0.91759 0.87556 0.91288 0.92021 0.88698 0.92544 0.89376 0.86092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.18 8.51 71.98 0.61 -4.57 16 2 C -0.12 -5.72 5.45 30.60 0.17 -5.55 16 3 C 0.28 13.50 2.24 44.24 0.10 13.59 16 4 H 0.00 -0.28 7.58 -2.38 -0.02 -0.30 16 5 C -0.54 -27.65 8.73 25.60 0.22 -27.43 16 6 H 0.07 3.42 7.74 -2.91 -0.02 3.39 16 7 C 0.01 0.69 5.29 84.65 0.45 1.14 16 8 N -0.92 -51.73 11.29 21.45 0.24 -51.48 16 9 Si 0.97 41.20 29.54 68.60 2.03 43.22 16 10 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 11 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 12 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 13 N -0.71 -25.74 5.02 -446.09 -2.24 -27.98 16 14 C 0.49 16.19 6.40 87.66 0.56 16.75 16 15 O -0.59 -24.73 12.93 -3.04 -0.04 -24.77 16 16 C -0.12 -2.21 5.54 29.85 0.17 -2.04 16 17 C -0.09 -1.95 3.29 -10.14 -0.03 -1.98 16 18 C 0.11 2.51 8.45 86.44 0.73 3.24 16 19 N -0.64 -15.42 3.61 -966.39 -3.49 -18.91 16 20 C 0.66 18.82 8.22 129.79 1.07 19.89 16 21 O -0.60 -18.81 12.61 19.81 0.25 -18.56 16 22 O -0.37 -9.87 9.87 -55.43 -0.55 -10.42 16 23 C 0.12 2.42 1.13 -10.79 -0.01 2.41 16 24 C -0.18 -3.24 8.37 71.98 0.60 -2.63 16 25 C -0.14 -1.91 8.85 71.98 0.64 -1.28 16 26 C -0.18 -3.54 8.37 71.98 0.60 -2.94 16 27 C 0.14 2.44 8.41 86.48 0.73 3.17 16 28 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 29 H 0.02 1.06 7.85 -2.38 -0.02 1.04 16 30 H 0.05 2.08 5.64 -2.39 -0.01 2.06 16 31 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.07 3.56 5.95 -2.39 -0.01 3.54 16 33 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 34 H 0.40 11.96 8.54 -92.71 -0.79 11.17 16 35 H 0.13 1.71 8.14 -2.38 -0.02 1.69 16 36 H 0.13 1.60 7.88 -2.39 -0.02 1.58 16 37 H 0.09 2.35 7.74 -2.39 -0.02 2.33 16 38 H 0.11 1.90 7.92 -2.39 -0.02 1.89 16 39 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.06 1.48 5.88 -2.39 -0.01 1.47 16 43 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.06 1.56 5.88 -2.39 -0.01 1.55 16 47 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 49 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 50 H 0.12 1.37 8.10 -2.39 -0.02 1.35 16 Total: -1.00 -72.17 396.15 2.93 -69.24 By element: Atomic # 1 Polarization: 27.75 SS G_CDS: 0.13 Total: 27.89 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: 6.60 Total: 11.78 kcal Atomic # 7 Polarization: -92.89 SS G_CDS: -5.49 Total: -98.38 kcal Atomic # 8 Polarization: -53.42 SS G_CDS: -0.34 Total: -53.75 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.22 kcal Total: -72.17 2.93 -69.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183904649.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.881 kcal (2) G-P(sol) polarization free energy of solvation -72.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds