Wall clock time and date at job start Tue Mar 31 2020 15:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47172 * 2 1 4 4 H 1.09002 * 109.46899 * 54.99918 * 3 2 1 5 5 N 1.46500 * 109.46974 * 295.00357 * 3 2 1 6 6 C 1.34773 * 120.00432 * 84.99591 * 5 3 2 7 7 O 1.21353 * 120.00047 * 0.02562 * 6 5 3 8 8 C 1.49454 * 120.00135 * 179.72278 * 6 5 3 9 9 O 1.21343 * 119.99752 * 0.28157 * 8 6 5 10 10 N 1.34777 * 120.00164 * 180.27489 * 8 6 5 11 11 C 1.46499 * 120.00065 * 180.02562 * 10 8 6 12 12 C 1.53003 * 109.46671 * 180.02562 * 11 10 8 13 13 C 1.53005 * 109.46661 * 180.02562 * 12 11 10 14 14 C 1.50696 * 109.46885 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00286 * 359.97438 * 14 13 12 16 16 C 1.37885 * 120.00114 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99465 * 0.02562 * 16 14 13 18 18 Si 1.86791 * 120.00149 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47229 * 60.00369 * 18 16 14 20 20 H 1.48498 * 109.47080 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47153 * 299.99916 * 18 16 14 22 22 C 1.52994 * 109.47019 * 175.00117 * 3 2 1 23 23 C 1.53178 * 109.54527 * 299.82067 * 22 3 2 24 24 C 1.53103 * 109.15685 * 183.24269 * 23 22 3 25 25 O 1.42900 * 109.48810 * 57.47613 * 24 23 22 26 26 C 1.42909 * 114.09796 * 298.88807 * 25 24 23 27 27 C 1.53094 * 109.41610 * 61.15786 * 26 25 24 28 28 H 1.09000 * 109.47154 * 300.00215 * 1 2 3 29 29 H 1.09004 * 109.47042 * 59.99818 * 1 2 3 30 30 H 1.08997 * 109.47148 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47154 * 239.99785 * 2 1 3 32 32 H 1.08995 * 109.47032 * 119.99578 * 2 1 3 33 33 H 0.97001 * 119.99454 * 265.00326 * 5 3 2 34 34 H 0.97000 * 119.99555 * 0.02562 * 10 8 6 35 35 H 1.08994 * 109.46952 * 300.00262 * 11 10 8 36 36 H 1.08992 * 109.46844 * 60.00609 * 11 10 8 37 37 H 1.08994 * 109.47336 * 299.99647 * 12 11 10 38 38 H 1.08992 * 109.47300 * 60.00508 * 12 11 10 39 39 H 1.09008 * 109.46807 * 299.99899 * 13 12 11 40 40 H 1.08998 * 109.47208 * 59.99706 * 13 12 11 41 41 H 0.96997 * 119.99506 * 180.02562 * 17 16 14 42 42 H 1.09003 * 109.54499 * 59.99988 * 22 3 2 43 43 H 1.09008 * 109.51919 * 303.06224 * 23 22 3 44 44 H 1.09001 * 109.52032 * 63.24630 * 23 22 3 45 45 H 1.08999 * 109.40737 * 297.49307 * 24 23 22 46 46 H 1.08998 * 109.47966 * 177.50197 * 24 23 22 47 47 H 1.08990 * 109.47765 * 301.17417 * 26 25 24 48 48 H 1.08996 * 109.47802 * 181.13729 * 26 25 24 49 49 H 1.08996 * 109.52438 * 182.48525 * 27 26 25 50 50 H 1.09000 * 109.57517 * 62.32776 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 7 1.6524 2.0975 -1.2518 6 6 0.4351 2.6644 -1.3670 7 8 -0.3398 2.6326 -0.4336 8 6 0.0420 3.3379 -2.6419 9 8 0.8170 3.3700 -3.5751 10 7 -1.1732 3.9096 -2.7552 11 6 -1.5587 4.5694 -4.0051 12 6 -2.9754 5.1311 -3.8693 13 6 -3.3783 5.8196 -5.1750 14 6 -4.7734 6.3734 -5.0411 15 1 -5.3184 6.2466 -4.1173 16 6 -5.3541 7.0420 -6.0979 17 7 -4.6906 7.1959 -7.2230 18 14 -7.0837 7.7278 -5.9322 19 1 -7.1216 8.7119 -4.8208 20 1 -7.4746 8.3961 -7.1993 21 1 -8.0300 6.6200 -5.6450 22 6 3.5648 1.4443 0.1257 23 6 3.9718 0.7638 1.4363 24 6 5.4929 0.8422 1.5919 25 8 5.9058 2.2098 1.5570 26 6 5.5940 2.8825 0.3353 27 6 4.0769 2.8881 0.1302 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 2.2719 2.1231 -1.9978 34 1 -1.7925 3.8842 -2.0091 35 1 -0.8644 5.3827 -4.2157 36 1 -1.5305 3.8471 -4.8208 37 1 -3.6700 4.3180 -3.6585 38 1 -3.0032 5.8535 -3.0536 39 1 -2.6837 6.6327 -5.3862 40 1 -3.3505 5.0969 -5.9904 41 1 -5.0990 7.6666 -7.9663 42 1 4.0007 0.9055 -0.7156 43 1 3.4944 1.2720 2.2741 44 1 3.6596 -0.2804 1.4167 45 1 5.9689 0.2979 0.7763 46 1 5.7842 0.3987 2.5440 47 1 6.0714 2.3649 -0.4966 48 1 5.9581 3.9088 0.3823 49 1 3.8398 3.3617 -0.8224 50 1 3.6009 3.4408 0.9402 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343303424.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:39 Heat of formation + Delta-G solvation = -149.545144 kcal Electronic energy + Delta-G solvation = -27869.461955 eV Core-core repulsion = 23895.552551 eV Total energy + Delta-G solvation = -3973.909404 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.01283 -39.90034 -38.66259 -36.82576 -35.64437 -33.58523 -33.20580 -32.67238 -31.42632 -31.25838 -27.95430 -27.09181 -24.83602 -24.27455 -23.51291 -22.58402 -21.18648 -20.87742 -20.75098 -19.98256 -18.33429 -17.13253 -16.66287 -16.45110 -16.40856 -16.23477 -15.83257 -15.29315 -15.14149 -14.97473 -14.68530 -14.45923 -14.20431 -14.03560 -13.79892 -13.61188 -13.29048 -12.85946 -12.73540 -12.31536 -12.06910 -11.91192 -11.91024 -11.81245 -11.78576 -11.61212 -11.26373 -11.11809 -11.07958 -10.90328 -10.77483 -10.72525 -10.64154 -10.01602 -9.91582 -9.78044 -9.41386 -9.34626 -9.15503 -9.00145 -8.38759 -6.03712 -4.06811 1.40955 2.31179 3.21166 3.31682 3.36285 3.38441 3.43799 3.61840 3.98325 4.20367 4.28530 4.42677 4.49014 4.51217 4.70504 4.75273 4.78700 4.84724 4.98211 5.03629 5.19002 5.22604 5.27211 5.31962 5.32121 5.40715 5.49105 5.57367 5.62098 5.64014 5.67062 5.71433 5.80465 5.84255 6.05962 6.06379 6.17867 6.25037 6.52156 6.67520 6.74866 6.91068 6.93484 7.39131 7.60020 7.71782 7.72066 7.94394 8.03481 8.35630 8.99395 9.57455 11.07494 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.026269 B = 0.001868 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.632790 B =14987.447857 C =15543.130349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.137 4.137 3 C 0.149 3.851 4 H 0.094 0.906 5 N -0.698 5.698 6 C 0.509 3.491 7 O -0.514 6.514 8 C 0.498 3.502 9 O -0.528 6.528 10 N -0.691 5.691 11 C 0.114 3.886 12 C -0.123 4.123 13 C 0.025 3.975 14 C -0.524 4.524 15 H 0.056 0.944 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.097 4.097 23 C -0.149 4.149 24 C 0.061 3.939 25 O -0.383 6.383 26 C 0.061 3.939 27 C -0.153 4.153 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.411 0.589 34 H 0.411 0.589 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.020 0.980 40 H 0.020 0.980 41 H 0.262 0.738 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.050 0.950 46 H 0.095 0.905 47 H 0.051 0.949 48 H 0.095 0.905 49 H 0.078 0.922 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.894 -15.677 17.700 31.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.175 4.175 3 C 0.045 3.955 4 H 0.112 0.888 5 N -0.352 5.352 6 C 0.290 3.710 7 O -0.389 6.389 8 C 0.278 3.722 9 O -0.405 6.405 10 N -0.343 5.343 11 C -0.008 4.008 12 C -0.161 4.161 13 C -0.013 4.013 14 C -0.562 4.562 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.533 5.533 18 Si 0.722 3.278 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.116 4.116 23 C -0.187 4.187 24 C -0.016 4.016 25 O -0.302 6.302 26 C -0.016 4.016 27 C -0.191 4.191 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.247 0.753 34 H 0.247 0.753 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.071 0.929 42 H 0.098 0.902 43 H 0.095 0.905 44 H 0.099 0.901 45 H 0.069 0.931 46 H 0.113 0.887 47 H 0.069 0.931 48 H 0.113 0.887 49 H 0.096 0.904 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 20.944 -15.490 17.660 31.472 hybrid contribution -1.187 0.273 -0.349 1.267 sum 19.757 -15.217 17.312 30.358 Atomic orbital electron populations 1.21822 0.94625 1.00942 1.03101 1.22042 0.97322 0.95617 1.02526 1.21187 0.93657 0.93655 0.86983 0.88810 1.45794 1.16118 1.56122 1.17128 1.20271 0.82670 0.79466 0.88563 1.90771 1.50688 1.57689 1.39783 1.20070 0.83420 0.80715 0.87998 1.90755 1.51047 1.58782 1.39888 1.46075 1.15370 1.54327 1.18511 1.21840 0.98303 0.96687 0.84000 1.21927 0.91869 0.99857 1.02412 1.19028 0.96444 0.95396 0.90429 1.21162 1.00022 1.35712 0.99290 0.92622 1.25031 0.97928 0.96171 0.95335 1.69956 1.37519 1.42237 1.03567 0.86624 0.84632 0.79236 0.77306 1.20221 1.21270 1.20233 1.21480 0.94214 0.96957 0.98966 1.22276 0.97249 1.01726 0.97497 1.22575 0.93409 0.83299 1.02309 1.87954 1.80742 1.24062 1.37461 1.22591 0.94276 0.97932 0.86780 1.22268 0.96821 0.96453 1.03556 0.91974 0.92598 0.93303 0.91664 0.90588 0.75286 0.75322 0.91116 0.91120 0.92442 0.92429 0.96207 0.96207 0.92861 0.90205 0.90512 0.90094 0.93143 0.88726 0.93059 0.88672 0.90386 0.90658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 8.52 37.16 0.32 -1.07 16 2 C -0.14 -0.96 5.40 -26.73 -0.14 -1.11 16 3 C 0.15 1.12 1.84 -67.93 -0.13 0.99 16 4 H 0.09 0.85 7.58 -51.93 -0.39 0.45 16 5 N -0.70 -6.41 4.39 -54.23 -0.24 -6.64 16 6 C 0.51 6.22 6.46 -11.59 -0.07 6.14 16 7 O -0.51 -7.01 13.62 5.49 0.07 -6.94 16 8 C 0.50 7.19 7.89 -11.58 -0.09 7.10 16 9 O -0.53 -8.70 16.48 5.50 0.09 -8.61 16 10 N -0.69 -10.13 5.55 -60.73 -0.34 -10.47 16 11 C 0.11 1.93 5.67 -4.04 -0.02 1.91 16 12 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 13 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 14 C -0.52 -14.53 9.11 -34.44 -0.31 -14.85 16 15 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 16 C 0.06 1.61 5.46 -17.81 -0.10 1.52 16 17 N -0.89 -26.59 13.29 55.43 0.74 -25.86 16 18 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 C -0.10 -0.55 1.90 -90.44 -0.17 -0.73 16 23 C -0.15 -0.74 4.99 -26.59 -0.13 -0.88 16 24 C 0.06 0.33 6.84 37.21 0.25 0.59 16 25 O -0.38 -3.07 10.77 -35.23 -0.38 -3.45 16 26 C 0.06 0.39 6.84 37.21 0.25 0.65 16 27 C -0.15 -1.00 5.22 -26.59 -0.14 -1.14 16 28 H 0.06 0.64 7.85 -51.93 -0.41 0.23 16 29 H 0.05 0.64 5.65 -51.93 -0.29 0.35 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.42 6.26 -51.93 -0.32 0.09 16 33 H 0.41 3.44 7.89 -40.82 -0.32 3.12 16 34 H 0.41 5.50 7.94 -40.82 -0.32 5.18 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.08 0.44 8.14 -51.92 -0.42 0.02 16 44 H 0.08 0.30 6.51 -51.93 -0.34 -0.04 16 45 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 46 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 48 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.08 0.52 7.58 -51.93 -0.39 0.12 16 50 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 396.75 15.07 5.98 5.98 Total: -1.00 -31.89 396.75 -8.54 -40.43 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -8.68 Total: 2.03 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -0.77 Total: -2.91 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: 0.16 Total: -42.97 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: -0.21 Total: -19.00 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.89 -8.54 -40.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343303424.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.112 kcal (2) G-P(sol) polarization free energy of solvation -31.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds