Wall clock time and date at job start Tue Mar 31 2020 15:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47172 * 2 1 4 4 H 1.09002 * 109.46899 * 54.99918 * 3 2 1 5 5 N 1.46500 * 109.46974 * 295.00357 * 3 2 1 6 6 C 1.34773 * 120.00432 * 84.99591 * 5 3 2 7 7 O 1.21353 * 120.00047 * 0.02562 * 6 5 3 8 8 C 1.49454 * 120.00135 * 179.72278 * 6 5 3 9 9 O 1.21343 * 119.99752 * 0.28157 * 8 6 5 10 10 N 1.34777 * 120.00164 * 180.27489 * 8 6 5 11 11 C 1.46499 * 120.00065 * 180.02562 * 10 8 6 12 12 C 1.53003 * 109.46671 * 180.02562 * 11 10 8 13 13 C 1.53005 * 109.46661 * 180.02562 * 12 11 10 14 14 C 1.50696 * 109.46885 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00286 * 359.97438 * 14 13 12 16 16 C 1.37885 * 120.00114 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99465 * 0.02562 * 16 14 13 18 18 Si 1.86791 * 120.00149 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47229 * 60.00369 * 18 16 14 20 20 H 1.48498 * 109.47080 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47153 * 299.99916 * 18 16 14 22 22 C 1.52994 * 109.47019 * 175.00117 * 3 2 1 23 23 C 1.53178 * 109.54527 * 299.82067 * 22 3 2 24 24 C 1.53103 * 109.15685 * 183.24269 * 23 22 3 25 25 O 1.42900 * 109.48810 * 57.47613 * 24 23 22 26 26 C 1.42909 * 114.09796 * 298.88807 * 25 24 23 27 27 C 1.53094 * 109.41610 * 61.15786 * 26 25 24 28 28 H 1.09000 * 109.47154 * 300.00215 * 1 2 3 29 29 H 1.09004 * 109.47042 * 59.99818 * 1 2 3 30 30 H 1.08997 * 109.47148 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47154 * 239.99785 * 2 1 3 32 32 H 1.08995 * 109.47032 * 119.99578 * 2 1 3 33 33 H 0.97001 * 119.99454 * 265.00326 * 5 3 2 34 34 H 0.97000 * 119.99555 * 0.02562 * 10 8 6 35 35 H 1.08994 * 109.46952 * 300.00262 * 11 10 8 36 36 H 1.08992 * 109.46844 * 60.00609 * 11 10 8 37 37 H 1.08994 * 109.47336 * 299.99647 * 12 11 10 38 38 H 1.08992 * 109.47300 * 60.00508 * 12 11 10 39 39 H 1.09008 * 109.46807 * 299.99899 * 13 12 11 40 40 H 1.08998 * 109.47208 * 59.99706 * 13 12 11 41 41 H 0.96997 * 119.99506 * 180.02562 * 17 16 14 42 42 H 1.09003 * 109.54499 * 59.99988 * 22 3 2 43 43 H 1.09008 * 109.51919 * 303.06224 * 23 22 3 44 44 H 1.09001 * 109.52032 * 63.24630 * 23 22 3 45 45 H 1.08999 * 109.40737 * 297.49307 * 24 23 22 46 46 H 1.08998 * 109.47966 * 177.50197 * 24 23 22 47 47 H 1.08990 * 109.47765 * 301.17417 * 26 25 24 48 48 H 1.08996 * 109.47802 * 181.13729 * 26 25 24 49 49 H 1.08996 * 109.52438 * 182.48525 * 27 26 25 50 50 H 1.09000 * 109.57517 * 62.32776 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 7 1.6524 2.0975 -1.2518 6 6 0.4351 2.6644 -1.3670 7 8 -0.3398 2.6326 -0.4336 8 6 0.0420 3.3379 -2.6419 9 8 0.8170 3.3700 -3.5751 10 7 -1.1732 3.9096 -2.7552 11 6 -1.5587 4.5694 -4.0051 12 6 -2.9754 5.1311 -3.8693 13 6 -3.3783 5.8196 -5.1750 14 6 -4.7734 6.3734 -5.0411 15 1 -5.3184 6.2466 -4.1173 16 6 -5.3541 7.0420 -6.0979 17 7 -4.6906 7.1959 -7.2230 18 14 -7.0837 7.7278 -5.9322 19 1 -7.1216 8.7119 -4.8208 20 1 -7.4746 8.3961 -7.1993 21 1 -8.0300 6.6200 -5.6450 22 6 3.5648 1.4443 0.1257 23 6 3.9718 0.7638 1.4363 24 6 5.4929 0.8422 1.5919 25 8 5.9058 2.2098 1.5570 26 6 5.5940 2.8825 0.3353 27 6 4.0769 2.8881 0.1302 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 2.2719 2.1231 -1.9978 34 1 -1.7925 3.8842 -2.0091 35 1 -0.8644 5.3827 -4.2157 36 1 -1.5305 3.8471 -4.8208 37 1 -3.6700 4.3180 -3.6585 38 1 -3.0032 5.8535 -3.0536 39 1 -2.6837 6.6327 -5.3862 40 1 -3.3505 5.0969 -5.9904 41 1 -5.0990 7.6666 -7.9663 42 1 4.0007 0.9055 -0.7156 43 1 3.4944 1.2720 2.2741 44 1 3.6596 -0.2804 1.4167 45 1 5.9689 0.2979 0.7763 46 1 5.7842 0.3987 2.5440 47 1 6.0714 2.3649 -0.4966 48 1 5.9581 3.9088 0.3823 49 1 3.8398 3.3617 -0.8224 50 1 3.6009 3.4408 0.9402 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343303424.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:38 Heat of formation + Delta-G solvation = -171.512862 kcal Electronic energy + Delta-G solvation = -27870.414547 eV Core-core repulsion = 23895.552551 eV Total energy + Delta-G solvation = -3974.861995 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.94899 -40.61815 -39.64043 -37.60787 -37.07857 -35.27672 -34.08749 -33.34338 -33.04018 -31.90063 -29.11453 -28.34904 -26.14571 -24.82571 -24.48966 -23.71355 -22.38107 -21.88579 -21.57973 -20.91964 -19.41102 -18.51463 -18.03327 -17.41155 -17.11263 -16.97993 -16.82361 -16.51527 -16.31961 -16.10148 -15.72494 -15.38506 -15.15479 -15.03631 -14.63270 -14.29575 -14.19431 -14.17272 -13.79238 -13.57739 -13.45142 -13.25450 -12.91503 -12.73576 -12.62056 -12.53392 -12.45871 -12.43875 -12.23425 -11.82173 -11.76028 -11.70716 -11.58408 -11.53235 -11.25549 -11.19786 -10.66941 -10.54728 -10.53164 -10.31346 -10.12132 -8.19850 -6.30830 0.32948 1.29295 1.41779 1.44245 1.52186 2.12579 2.41245 2.61830 3.00845 3.13861 3.38526 3.46418 3.69832 3.82896 4.06050 4.07155 4.16674 4.16734 4.17623 4.30815 4.35209 4.44531 4.51168 4.56572 4.68576 4.75590 4.77794 4.83739 4.85797 4.87559 4.90277 4.94858 5.02522 5.11260 5.13364 5.13709 5.19559 5.22110 5.29849 5.39245 5.46120 5.50616 5.69733 5.83629 5.91371 6.22366 6.30600 6.33949 6.72254 6.85768 6.93117 7.38375 8.91764 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.026269 B = 0.001868 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.632790 B =14987.447857 C =15543.130349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C 0.151 3.849 4 H 0.079 0.921 5 N -0.683 5.683 6 C 0.515 3.485 7 O -0.530 6.530 8 C 0.498 3.502 9 O -0.549 6.549 10 N -0.687 5.687 11 C 0.128 3.872 12 C -0.106 4.106 13 C 0.025 3.975 14 C -0.544 4.544 15 H 0.064 0.936 16 C -0.002 4.002 17 N -0.932 5.932 18 Si 0.966 3.034 19 H -0.267 1.267 20 H -0.285 1.285 21 H -0.267 1.267 22 C -0.090 4.090 23 C -0.145 4.145 24 C 0.056 3.944 25 O -0.407 6.407 26 C 0.060 3.940 27 C -0.152 4.152 28 H 0.049 0.951 29 H 0.032 0.968 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.417 0.583 34 H 0.419 0.581 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.066 0.934 39 H -0.004 1.004 40 H -0.004 1.004 41 H 0.263 0.737 42 H 0.095 0.905 43 H 0.067 0.933 44 H 0.100 0.900 45 H 0.062 0.938 46 H 0.105 0.895 47 H 0.063 0.937 48 H 0.095 0.905 49 H 0.075 0.925 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.200 -16.982 19.087 33.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.170 4.170 3 C 0.047 3.953 4 H 0.097 0.903 5 N -0.335 5.335 6 C 0.296 3.704 7 O -0.407 6.407 8 C 0.279 3.721 9 O -0.427 6.427 10 N -0.339 5.339 11 C 0.005 3.995 12 C -0.144 4.144 13 C -0.013 4.013 14 C -0.581 4.581 15 H 0.082 0.918 16 C -0.200 4.200 17 N -0.572 5.572 18 Si 0.790 3.210 19 H -0.192 1.192 20 H -0.210 1.210 21 H -0.192 1.192 22 C -0.109 4.109 23 C -0.183 4.183 24 C -0.021 4.021 25 O -0.327 6.327 26 C -0.017 4.017 27 C -0.190 4.190 28 H 0.068 0.932 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.117 0.883 33 H 0.254 0.746 34 H 0.256 0.744 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.015 0.985 40 H 0.015 0.985 41 H 0.072 0.928 42 H 0.113 0.887 43 H 0.086 0.914 44 H 0.118 0.882 45 H 0.080 0.920 46 H 0.123 0.877 47 H 0.081 0.919 48 H 0.113 0.887 49 H 0.093 0.907 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 21.275 -16.819 19.078 33.158 hybrid contribution -1.217 0.651 -0.771 1.581 sum 20.057 -16.168 18.307 31.604 Atomic orbital electron populations 1.21796 0.96381 1.00963 1.01320 1.22037 0.95598 0.95233 1.04107 1.21305 0.94891 0.93692 0.85376 0.90279 1.45798 1.14930 1.54840 1.17974 1.19810 0.83530 0.79782 0.87325 1.90774 1.51388 1.58655 1.39863 1.20476 0.82814 0.80164 0.88627 1.90743 1.51571 1.59538 1.40893 1.45889 1.15920 1.54262 1.17877 1.21459 0.96763 0.96398 0.84925 1.21637 0.93346 0.99900 0.99481 1.18931 0.95275 0.94441 0.92620 1.21648 1.01223 1.35640 0.99638 0.91793 1.25990 1.02433 0.96574 0.94973 1.70093 1.39523 1.43194 1.04437 0.85492 0.79262 0.78759 0.77479 1.19171 1.21037 1.19179 1.21448 0.92579 0.96692 1.00141 1.22260 0.96992 1.02569 0.96469 1.22752 0.93607 0.82302 1.03412 1.87924 1.81115 1.25442 1.38196 1.22638 0.94042 0.98196 0.86789 1.22233 0.97046 0.96897 1.02777 0.93226 0.94873 0.92384 0.90689 0.88306 0.74587 0.74400 0.91801 0.91800 0.91506 0.91506 0.98548 0.98532 0.92785 0.88716 0.91418 0.88183 0.91983 0.87735 0.91907 0.88662 0.90655 0.92144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 8.52 71.98 0.61 -1.97 16 2 C -0.13 -1.54 5.40 30.60 0.17 -1.38 16 3 C 0.15 2.01 1.84 44.99 0.08 2.10 16 4 H 0.08 1.36 7.58 -2.39 -0.02 1.34 16 5 N -0.68 -11.75 4.39 -443.86 -1.95 -13.69 16 6 C 0.52 12.26 6.46 87.27 0.56 12.83 16 7 O -0.53 -14.22 13.62 -3.26 -0.04 -14.27 16 8 C 0.50 14.18 7.89 87.27 0.69 14.86 16 9 O -0.55 -17.93 16.48 -3.23 -0.05 -17.98 16 10 N -0.69 -19.85 5.55 -464.43 -2.58 -22.43 16 11 C 0.13 4.34 5.67 86.38 0.49 4.83 16 12 C -0.11 -4.06 5.27 30.60 0.16 -3.90 16 13 C 0.03 1.28 4.97 29.85 0.15 1.43 16 14 C -0.54 -30.30 9.11 25.60 0.23 -30.06 16 15 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 16 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 17 N -0.93 -56.43 13.29 21.45 0.28 -56.15 16 18 Si 0.97 43.85 29.54 68.60 2.03 45.88 16 19 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 21 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 22 C -0.09 -0.84 1.90 -10.67 -0.02 -0.86 16 23 C -0.14 -1.10 4.99 30.69 0.15 -0.95 16 24 C 0.06 0.48 6.84 72.02 0.49 0.97 16 25 O -0.41 -6.00 10.77 -148.98 -1.60 -7.61 16 26 C 0.06 0.70 6.84 72.01 0.49 1.19 16 27 C -0.15 -1.82 5.22 30.69 0.16 -1.66 16 28 H 0.05 0.98 7.85 -2.39 -0.02 0.96 16 29 H 0.03 0.73 5.65 -2.38 -0.01 0.71 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.87 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.10 0.75 6.26 -2.39 -0.01 0.73 16 33 H 0.42 6.38 7.89 -92.71 -0.73 5.65 16 34 H 0.42 10.88 7.94 -92.71 -0.74 10.15 16 35 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.07 2.44 8.14 -2.39 -0.02 2.43 16 38 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 39 H 0.00 -0.21 8.14 -2.38 -0.02 -0.23 16 40 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 41 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 42 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 44 H 0.10 0.39 6.51 -2.39 -0.02 0.38 16 45 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 46 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 48 H 0.10 1.05 8.14 -2.39 -0.02 1.04 16 49 H 0.07 0.93 7.58 -2.39 -0.02 0.91 16 50 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -68.96 396.75 0.44 -68.52 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: -0.53 Total: 19.92 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: 4.89 Total: -2.19 kcal Atomic # 7 Polarization: -88.03 SS G_CDS: -4.24 Total: -92.27 kcal Atomic # 8 Polarization: -38.15 SS G_CDS: -1.70 Total: -39.85 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -68.96 0.44 -68.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343303424.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.991 kcal (2) G-P(sol) polarization free energy of solvation -68.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds