Wall clock time and date at job start Tue Mar 31 2020 16:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47276 * 2 1 4 4 H 1.08994 * 109.46599 * 55.00466 * 3 2 1 5 5 O 1.42902 * 109.47152 * 295.00336 * 3 2 1 6 6 C 1.42900 * 113.99821 * 89.99636 * 5 3 2 7 7 H 1.09001 * 109.47130 * 330.00032 * 6 5 3 8 8 C 1.53006 * 109.46976 * 89.99801 * 6 5 3 9 9 C 1.52997 * 109.47127 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47060 * 300.00449 * 9 8 6 11 11 C 1.52996 * 109.47328 * 60.00126 * 10 9 8 12 12 H 1.08992 * 109.47554 * 59.99639 * 11 10 9 13 13 C 1.52997 * 109.46975 * 180.02562 * 11 10 9 14 14 C 1.52997 * 109.47084 * 209.99741 * 6 5 3 15 15 C 1.50698 * 109.46877 * 175.00289 * 3 2 1 16 16 O 1.21286 * 120.00166 * 120.00571 * 15 3 2 17 17 N 1.34781 * 120.00115 * 299.99885 * 15 3 2 18 18 C 1.46496 * 119.99798 * 180.02562 * 17 15 3 19 19 C 1.50707 * 109.47044 * 180.02562 * 18 17 15 20 20 O 1.21290 * 119.99852 * 0.02562 * 19 18 17 21 21 N 1.34770 * 119.99890 * 179.97438 * 19 18 17 22 22 C 1.37099 * 119.99745 * 179.97438 * 21 19 18 23 23 H 1.08001 * 120.00031 * 0.02562 * 22 21 19 24 24 C 1.38953 * 120.00208 * 180.02562 * 22 21 19 25 25 N 1.31415 * 119.99803 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 120.00472 * 180.02562 * 24 22 21 27 27 H 1.48509 * 109.47120 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.47413 * 119.99815 * 26 24 22 29 29 H 1.48494 * 109.47550 * 240.00365 * 26 24 22 30 30 H 1.09003 * 109.46947 * 299.99701 * 1 2 3 31 31 H 1.09000 * 109.47477 * 59.99694 * 1 2 3 32 32 H 1.09001 * 109.47016 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46947 * 240.00299 * 2 1 3 34 34 H 1.09001 * 109.47370 * 120.00844 * 2 1 3 35 35 H 1.08998 * 109.46505 * 59.99598 * 8 6 5 36 36 H 1.08996 * 109.46884 * 300.00479 * 8 6 5 37 37 H 1.09002 * 109.47153 * 180.02562 * 9 8 6 38 38 H 1.09001 * 109.46832 * 60.00321 * 9 8 6 39 39 H 1.09004 * 109.46724 * 180.02562 * 10 9 8 40 40 H 1.09001 * 109.47194 * 299.99650 * 10 9 8 41 41 H 1.09001 * 109.47375 * 59.99630 * 13 11 10 42 42 H 1.09002 * 109.47045 * 179.97438 * 13 11 10 43 43 H 1.09000 * 109.47140 * 299.99612 * 13 11 10 44 44 H 1.09002 * 109.47045 * 60.00217 * 14 6 5 45 45 H 1.09001 * 109.47375 * 300.00142 * 14 6 5 46 46 H 0.96999 * 119.99789 * 0.02562 * 17 15 3 47 47 H 1.09000 * 109.47436 * 299.99736 * 18 17 15 48 48 H 1.09001 * 109.47601 * 60.00413 * 18 17 15 49 49 H 0.97000 * 120.00659 * 0.02562 * 21 19 18 50 50 H 0.97001 * 120.00261 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 0.8418 5 8 1.6619 2.0814 -1.2210 6 6 0.3927 2.7356 -1.1659 7 1 -0.2540 2.2152 -0.4594 8 6 0.5846 4.1836 -0.7103 9 6 -0.7743 4.8843 -0.6518 10 6 -1.4170 4.8673 -2.0402 11 6 -1.6090 3.4193 -2.4957 12 1 -2.2558 2.8990 -1.7895 13 6 -2.2511 3.4024 -3.8843 14 6 -0.2506 2.7187 -2.5540 15 6 3.5419 1.4442 0.1238 16 8 4.2217 1.9435 -0.7478 17 7 4.1298 0.8910 1.2031 18 6 5.5898 0.8932 1.3236 19 6 5.9886 0.2187 2.6109 20 8 5.1370 -0.2210 3.3543 21 7 7.2915 0.1032 2.9356 22 6 7.6542 -0.5099 4.1070 23 1 6.8959 -0.9007 4.7693 24 6 8.9975 -0.6286 4.4422 25 7 9.9202 -0.1527 3.6365 26 14 9.4918 -1.4646 6.0378 27 1 8.2738 -1.9104 6.7610 28 1 10.3462 -2.6411 5.7362 29 1 10.2482 -0.5075 6.8844 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5140 0.8899 35 1 1.2313 4.7040 -1.4168 36 1 1.0429 4.1956 0.2786 37 1 -0.6375 5.9160 -0.3277 38 1 -1.4212 4.3639 0.0545 39 1 -2.3849 5.3669 -1.9986 40 1 -0.7700 5.3876 -2.7465 41 1 -1.6038 3.9227 -4.5903 42 1 -2.3874 2.3709 -4.2090 43 1 -3.2191 3.9017 -3.8430 44 1 -0.3873 1.6872 -2.8785 45 1 0.3961 3.2392 -3.2604 46 1 3.5862 0.4914 1.9000 47 1 6.0247 0.3544 0.4817 48 1 5.9529 1.9209 1.3239 49 1 7.9726 0.4544 2.3410 50 1 10.8580 -0.2358 3.8702 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343538439.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:08 Heat of formation + Delta-G solvation = -154.093643 kcal Electronic energy + Delta-G solvation = -28244.891769 eV Core-core repulsion = 24270.785128 eV Total energy + Delta-G solvation = -3974.106641 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.28022 -39.23332 -38.17541 -36.99485 -34.51228 -33.86830 -33.24509 -32.48059 -31.39562 -30.42350 -28.50328 -26.73916 -26.38154 -24.37261 -22.68909 -22.31668 -21.46660 -20.42345 -19.87783 -19.59818 -18.17321 -17.37810 -17.16852 -15.85126 -15.72020 -15.38952 -15.10122 -15.01597 -14.83766 -14.53986 -14.45152 -14.16682 -14.02841 -13.80070 -13.48612 -13.38534 -13.09268 -12.70283 -12.53736 -12.42035 -12.22406 -12.12235 -12.04657 -11.92544 -11.64900 -11.60143 -11.35598 -11.27102 -11.15505 -10.99997 -10.80338 -10.72849 -10.42175 -10.37138 -10.33655 -9.74285 -9.66361 -9.32648 -8.80759 -8.65283 -8.11824 -6.52958 -3.95063 2.76449 2.92660 3.09178 3.21594 3.28204 3.72190 3.80003 4.10441 4.34876 4.41512 4.59110 4.66100 4.68990 4.80345 4.85106 4.86552 4.91517 4.93436 5.08996 5.13934 5.15681 5.17127 5.24841 5.31819 5.33750 5.40775 5.48834 5.51341 5.65039 5.69566 5.72829 5.78188 5.85907 5.89843 5.90326 5.95036 5.95191 5.95759 6.02977 6.05544 6.06885 6.16479 6.64724 7.06086 7.44783 7.79322 7.90621 8.41648 8.45918 9.03019 9.37670 9.85243 10.63933 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.030714 B = 0.002024 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.410949 B =13828.366274 C =14031.967070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.144 4.144 3 C 0.077 3.923 4 H 0.086 0.914 5 O -0.347 6.347 6 C 0.080 3.920 7 H 0.071 0.929 8 C -0.144 4.144 9 C -0.117 4.117 10 C -0.117 4.117 11 C -0.089 4.089 12 H 0.070 0.930 13 C -0.147 4.147 14 C -0.110 4.110 15 C 0.512 3.488 16 O -0.528 6.528 17 N -0.706 5.706 18 C 0.110 3.890 19 C 0.428 3.572 20 O -0.598 6.598 21 N -0.549 5.549 22 C -0.305 4.305 23 H 0.106 0.894 24 C 0.025 3.975 25 N -0.894 5.894 26 Si 0.933 3.067 27 H -0.267 1.267 28 H -0.280 1.280 29 H -0.280 1.280 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.069 0.931 45 H 0.072 0.928 46 H 0.410 0.590 47 H 0.084 0.916 48 H 0.084 0.916 49 H 0.396 0.604 50 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.666 6.896 -11.107 26.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.182 4.182 3 C 0.016 3.984 4 H 0.103 0.897 5 O -0.265 6.265 6 C 0.022 3.978 7 H 0.089 0.911 8 C -0.182 4.182 9 C -0.154 4.154 10 C -0.154 4.154 11 C -0.108 4.108 12 H 0.088 0.912 13 C -0.204 4.204 14 C -0.147 4.147 15 C 0.296 3.704 16 O -0.403 6.403 17 N -0.362 5.362 18 C -0.018 4.018 19 C 0.214 3.786 20 O -0.485 6.485 21 N -0.183 5.183 22 C -0.434 4.434 23 H 0.124 0.876 24 C -0.178 4.178 25 N -0.534 5.534 26 Si 0.760 3.240 27 H -0.191 1.191 28 H -0.206 1.206 29 H -0.206 1.206 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.088 0.912 45 H 0.091 0.909 46 H 0.248 0.752 47 H 0.102 0.898 48 H 0.102 0.898 49 H 0.230 0.770 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -22.380 6.962 -11.386 26.057 hybrid contribution 0.538 -0.341 1.013 1.197 sum -21.842 6.621 -10.373 25.070 Atomic orbital electron populations 1.21955 0.95122 1.02467 1.01993 1.22051 0.96907 0.95215 1.04077 1.21905 0.92436 0.94811 0.89272 0.89655 1.88066 1.36177 1.70486 1.31766 1.22406 0.85085 0.92250 0.98053 0.91122 1.22084 0.97678 0.96326 1.02116 1.21492 0.96104 1.00642 0.97210 1.21641 1.00671 0.96228 0.96885 1.21087 0.95999 0.96118 0.97559 0.91151 1.21812 1.00401 1.01871 0.96305 1.21622 0.95619 1.01358 0.96126 1.20288 0.89590 0.78589 0.81927 1.90706 1.65059 1.44674 1.39907 1.45640 1.07594 1.59812 1.23151 1.20956 0.80841 1.01891 0.98071 1.19728 0.84002 0.86492 0.88379 1.90491 1.49870 1.54666 1.53434 1.41805 1.05149 1.50522 1.20869 1.19781 0.92371 1.33733 0.97536 0.87599 1.25340 0.95389 0.97496 0.99557 1.69624 1.01364 1.45234 1.37176 0.85750 0.78761 0.78682 0.80845 1.19133 1.20607 1.20611 0.92545 0.91806 0.91995 0.90297 0.89990 0.90901 0.91863 0.91632 0.91985 0.91921 0.91712 0.92535 0.92573 0.92633 0.91247 0.90906 0.75177 0.89770 0.89811 0.77011 0.91617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 8.58 37.16 0.32 -1.00 16 2 C -0.14 -1.55 5.58 -26.73 -0.15 -1.70 16 3 C 0.08 0.98 2.65 -27.88 -0.07 0.90 16 4 H 0.09 0.92 7.62 -51.93 -0.40 0.52 16 5 O -0.35 -4.62 9.10 -55.14 -0.50 -5.13 16 6 C 0.08 0.78 1.38 -26.73 -0.04 0.74 16 7 H 0.07 0.60 5.23 -51.93 -0.27 0.33 16 8 C -0.14 -1.37 5.53 -26.73 -0.15 -1.52 16 9 C -0.12 -0.85 5.92 -26.73 -0.16 -1.01 16 10 C -0.12 -0.78 5.20 -26.73 -0.14 -0.92 16 11 C -0.09 -0.60 2.72 -90.65 -0.25 -0.84 16 12 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 13 C -0.15 -0.87 9.19 37.16 0.34 -0.53 16 14 C -0.11 -0.94 4.72 -26.76 -0.13 -1.07 16 15 C 0.51 8.41 7.23 -10.98 -0.08 8.33 16 16 O -0.53 -10.64 16.50 -14.36 -0.24 -10.87 16 17 N -0.71 -11.75 5.39 -61.47 -0.33 -12.08 16 18 C 0.11 2.04 6.15 -5.19 -0.03 2.01 16 19 C 0.43 9.76 7.85 -10.98 -0.09 9.68 16 20 O -0.60 -15.09 15.24 5.55 0.08 -15.01 16 21 N -0.55 -13.57 5.29 -10.96 -0.06 -13.63 16 22 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 23 H 0.11 2.98 7.16 -52.49 -0.38 2.61 16 24 C 0.03 0.65 5.50 -17.47 -0.10 0.56 16 25 N -0.89 -23.84 13.05 55.50 0.72 -23.11 16 26 Si 0.93 20.45 29.55 -169.99 -5.02 15.43 16 27 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 28 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 29 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 30 H 0.06 0.42 8.01 -51.93 -0.42 0.00 16 31 H 0.06 0.52 5.54 -51.93 -0.29 0.23 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.08 0.86 7.43 -51.93 -0.39 0.48 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.63 7.96 -51.93 -0.41 0.22 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 44 H 0.07 0.59 7.88 -51.93 -0.41 0.18 16 45 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.41 6.55 6.80 -40.82 -0.28 6.27 16 47 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 48 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 49 H 0.40 9.44 7.90 -40.82 -0.32 9.12 16 50 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 397.15 15.07 5.98 5.98 Total: -1.00 -31.56 397.15 -8.82 -40.38 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: -8.61 Total: 12.80 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: -0.86 Total: 5.24 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: 0.34 Total: -48.83 kcal Atomic # 8 Polarization: -30.35 SS G_CDS: -0.65 Total: -31.01 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.56 -8.82 -40.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343538439.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.715 kcal (2) G-P(sol) polarization free energy of solvation -31.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds