Wall clock time and date at job start Tue Mar 31 2020 16:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47276 * 2 1 4 4 H 1.08994 * 109.46599 * 55.00466 * 3 2 1 5 5 O 1.42902 * 109.47152 * 295.00336 * 3 2 1 6 6 C 1.42900 * 113.99821 * 89.99636 * 5 3 2 7 7 H 1.09001 * 109.47130 * 330.00032 * 6 5 3 8 8 C 1.53006 * 109.46976 * 89.99801 * 6 5 3 9 9 C 1.52997 * 109.47127 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47060 * 300.00449 * 9 8 6 11 11 C 1.52996 * 109.47328 * 60.00126 * 10 9 8 12 12 H 1.08992 * 109.47554 * 59.99639 * 11 10 9 13 13 C 1.52997 * 109.46975 * 180.02562 * 11 10 9 14 14 C 1.52997 * 109.47084 * 209.99741 * 6 5 3 15 15 C 1.50698 * 109.46877 * 175.00289 * 3 2 1 16 16 O 1.21286 * 120.00166 * 120.00571 * 15 3 2 17 17 N 1.34781 * 120.00115 * 299.99885 * 15 3 2 18 18 C 1.46496 * 119.99798 * 180.02562 * 17 15 3 19 19 C 1.50707 * 109.47044 * 180.02562 * 18 17 15 20 20 O 1.21290 * 119.99852 * 0.02562 * 19 18 17 21 21 N 1.34770 * 119.99890 * 179.97438 * 19 18 17 22 22 C 1.37099 * 119.99745 * 179.97438 * 21 19 18 23 23 H 1.08001 * 120.00031 * 0.02562 * 22 21 19 24 24 C 1.38953 * 120.00208 * 180.02562 * 22 21 19 25 25 N 1.31415 * 119.99803 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 120.00472 * 180.02562 * 24 22 21 27 27 H 1.48509 * 109.47120 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.47413 * 119.99815 * 26 24 22 29 29 H 1.48494 * 109.47550 * 240.00365 * 26 24 22 30 30 H 1.09003 * 109.46947 * 299.99701 * 1 2 3 31 31 H 1.09000 * 109.47477 * 59.99694 * 1 2 3 32 32 H 1.09001 * 109.47016 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46947 * 240.00299 * 2 1 3 34 34 H 1.09001 * 109.47370 * 120.00844 * 2 1 3 35 35 H 1.08998 * 109.46505 * 59.99598 * 8 6 5 36 36 H 1.08996 * 109.46884 * 300.00479 * 8 6 5 37 37 H 1.09002 * 109.47153 * 180.02562 * 9 8 6 38 38 H 1.09001 * 109.46832 * 60.00321 * 9 8 6 39 39 H 1.09004 * 109.46724 * 180.02562 * 10 9 8 40 40 H 1.09001 * 109.47194 * 299.99650 * 10 9 8 41 41 H 1.09001 * 109.47375 * 59.99630 * 13 11 10 42 42 H 1.09002 * 109.47045 * 179.97438 * 13 11 10 43 43 H 1.09000 * 109.47140 * 299.99612 * 13 11 10 44 44 H 1.09002 * 109.47045 * 60.00217 * 14 6 5 45 45 H 1.09001 * 109.47375 * 300.00142 * 14 6 5 46 46 H 0.96999 * 119.99789 * 0.02562 * 17 15 3 47 47 H 1.09000 * 109.47436 * 299.99736 * 18 17 15 48 48 H 1.09001 * 109.47601 * 60.00413 * 18 17 15 49 49 H 0.97000 * 120.00659 * 0.02562 * 21 19 18 50 50 H 0.97001 * 120.00261 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 0.8418 5 8 1.6619 2.0814 -1.2210 6 6 0.3927 2.7356 -1.1659 7 1 -0.2540 2.2152 -0.4594 8 6 0.5846 4.1836 -0.7103 9 6 -0.7743 4.8843 -0.6518 10 6 -1.4170 4.8673 -2.0402 11 6 -1.6090 3.4193 -2.4957 12 1 -2.2558 2.8990 -1.7895 13 6 -2.2511 3.4024 -3.8843 14 6 -0.2506 2.7187 -2.5540 15 6 3.5419 1.4442 0.1238 16 8 4.2217 1.9435 -0.7478 17 7 4.1298 0.8910 1.2031 18 6 5.5898 0.8932 1.3236 19 6 5.9886 0.2187 2.6109 20 8 5.1370 -0.2210 3.3543 21 7 7.2915 0.1032 2.9356 22 6 7.6542 -0.5099 4.1070 23 1 6.8959 -0.9007 4.7693 24 6 8.9975 -0.6286 4.4422 25 7 9.9202 -0.1527 3.6365 26 14 9.4918 -1.4646 6.0378 27 1 8.2738 -1.9104 6.7610 28 1 10.3462 -2.6411 5.7362 29 1 10.2482 -0.5075 6.8844 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5140 0.8899 35 1 1.2313 4.7040 -1.4168 36 1 1.0429 4.1956 0.2786 37 1 -0.6375 5.9160 -0.3277 38 1 -1.4212 4.3639 0.0545 39 1 -2.3849 5.3669 -1.9986 40 1 -0.7700 5.3876 -2.7465 41 1 -1.6038 3.9227 -4.5903 42 1 -2.3874 2.3709 -4.2090 43 1 -3.2191 3.9017 -3.8430 44 1 -0.3873 1.6872 -2.8785 45 1 0.3961 3.2392 -3.2604 46 1 3.5862 0.4914 1.9000 47 1 6.0247 0.3544 0.4817 48 1 5.9529 1.9209 1.3239 49 1 7.9726 0.4544 2.3410 50 1 10.8580 -0.2358 3.8702 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343538439.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:07 Heat of formation + Delta-G solvation = -173.752416 kcal Electronic energy + Delta-G solvation = -28245.744238 eV Core-core repulsion = 24270.785128 eV Total energy + Delta-G solvation = -3974.959110 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.41596 -40.43948 -39.75118 -37.91392 -36.27916 -35.44461 -34.19819 -33.38084 -33.12027 -31.16670 -29.85683 -27.75184 -27.26082 -26.13497 -23.35335 -23.20757 -22.17154 -21.54334 -21.41446 -20.64572 -20.09362 -18.76075 -18.16752 -17.38739 -16.93338 -16.62230 -16.56034 -16.28213 -16.00071 -15.70055 -15.48706 -15.32277 -15.05696 -14.99767 -14.78311 -14.12199 -14.00073 -13.85876 -13.60181 -13.56213 -13.29263 -13.25607 -13.14044 -12.93815 -12.91992 -12.71663 -12.45330 -12.31229 -12.11230 -12.04451 -11.88603 -11.70955 -11.58918 -11.42435 -11.36364 -11.09727 -10.85294 -10.58084 -10.32795 -10.24728 -10.10002 -8.52080 -6.02418 1.34389 1.42541 1.46895 1.56401 1.72407 1.88965 2.28249 2.80077 3.10353 3.14995 3.57038 3.72233 3.76371 3.81665 3.92553 4.00344 4.17428 4.19267 4.23699 4.24248 4.32942 4.38829 4.39929 4.49895 4.52788 4.53195 4.64219 4.76949 4.80235 4.85183 4.99956 5.01666 5.06892 5.09676 5.13933 5.15761 5.20510 5.28834 5.30544 5.32818 5.37814 5.41672 5.43045 5.58342 5.90456 6.15929 6.44432 6.50030 7.02115 7.10272 7.42630 7.92161 8.65022 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.030714 B = 0.002024 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.410949 B =13828.366274 C =14031.967070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.141 4.141 3 C 0.083 3.917 4 H 0.108 0.892 5 O -0.373 6.373 6 C 0.076 3.924 7 H 0.090 0.910 8 C -0.145 4.145 9 C -0.113 4.113 10 C -0.116 4.116 11 C -0.084 4.084 12 H 0.082 0.918 13 C -0.146 4.146 14 C -0.107 4.107 15 C 0.511 3.489 16 O -0.569 6.569 17 N -0.702 5.702 18 C 0.121 3.879 19 C 0.434 3.566 20 O -0.621 6.621 21 N -0.560 5.560 22 C -0.336 4.336 23 H 0.088 0.912 24 C -0.012 4.012 25 N -0.917 5.917 26 Si 0.998 3.002 27 H -0.269 1.269 28 H -0.272 1.272 29 H -0.272 1.272 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.052 0.948 36 H 0.056 0.944 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.055 0.945 41 H 0.049 0.951 42 H 0.057 0.943 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.054 0.946 46 H 0.415 0.585 47 H 0.093 0.907 48 H 0.093 0.907 49 H 0.398 0.602 50 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.559 6.785 -10.577 27.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.179 4.179 3 C 0.022 3.978 4 H 0.125 0.875 5 O -0.292 6.292 6 C 0.019 3.981 7 H 0.108 0.892 8 C -0.183 4.183 9 C -0.150 4.150 10 C -0.153 4.153 11 C -0.103 4.103 12 H 0.101 0.899 13 C -0.203 4.203 14 C -0.145 4.145 15 C 0.297 3.703 16 O -0.447 6.447 17 N -0.358 5.358 18 C -0.007 4.007 19 C 0.221 3.779 20 O -0.509 6.509 21 N -0.195 5.195 22 C -0.465 4.465 23 H 0.106 0.894 24 C -0.213 4.213 25 N -0.557 5.557 26 Si 0.822 3.178 27 H -0.193 1.193 28 H -0.197 1.197 29 H -0.197 1.197 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.073 0.927 46 H 0.254 0.746 47 H 0.111 0.889 48 H 0.111 0.889 49 H 0.233 0.767 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -24.292 6.857 -10.867 27.481 hybrid contribution 1.109 -0.272 0.791 1.389 sum -23.183 6.585 -10.075 26.121 Atomic orbital electron populations 1.21941 0.92878 1.03497 1.02806 1.22037 0.98820 0.93512 1.03528 1.21917 0.89412 0.96423 0.90033 0.87477 1.88047 1.38047 1.70957 1.32134 1.22634 0.84053 0.92161 0.99243 0.89223 1.22087 0.98779 0.96389 1.01029 1.21481 0.94833 1.00720 0.97979 1.21644 1.01184 0.96290 0.96215 1.21076 0.94860 0.95939 0.98390 0.89936 1.21804 1.00735 1.02118 0.95627 1.21627 0.96374 1.01474 0.95008 1.21041 0.91286 0.77143 0.80783 1.90683 1.66377 1.46448 1.41220 1.45627 1.06709 1.59888 1.23554 1.20781 0.82310 1.01873 0.95731 1.20337 0.83158 0.85272 0.89100 1.90468 1.50397 1.55429 1.54655 1.41858 1.05907 1.51052 1.20668 1.19790 0.92691 1.35472 0.98567 0.89403 1.26160 0.94896 0.97626 1.02600 1.69691 1.01793 1.45637 1.38536 0.84790 0.78247 0.77905 0.76908 1.19303 1.19693 1.19679 0.91100 0.91557 0.90930 0.91581 0.89831 0.92964 0.92555 0.91246 0.90666 0.90356 0.92633 0.93146 0.92357 0.91482 0.91155 0.92682 0.74580 0.88935 0.88898 0.76748 0.91079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 8.58 71.98 0.62 -1.56 16 2 C -0.14 -2.83 5.58 30.59 0.17 -2.66 16 3 C 0.08 2.03 2.65 29.85 0.08 2.11 16 4 H 0.11 2.12 7.62 -2.39 -0.02 2.10 16 5 O -0.37 -9.81 9.10 -129.94 -1.18 -11.00 16 6 C 0.08 1.40 1.38 30.60 0.04 1.45 16 7 H 0.09 1.30 5.23 -2.39 -0.01 1.29 16 8 C -0.14 -2.67 5.53 30.60 0.17 -2.50 16 9 C -0.11 -1.44 5.92 30.59 0.18 -1.26 16 10 C -0.12 -1.33 5.20 30.59 0.16 -1.17 16 11 C -0.08 -0.96 2.72 -10.81 -0.03 -0.99 16 12 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 13 C -0.15 -1.46 9.19 71.98 0.66 -0.80 16 14 C -0.11 -1.75 4.72 30.58 0.14 -1.60 16 15 C 0.51 16.72 7.23 87.66 0.63 17.35 16 16 O -0.57 -23.24 16.50 15.99 0.26 -22.97 16 17 N -0.70 -23.12 5.39 -466.77 -2.52 -25.64 16 18 C 0.12 4.47 6.15 85.64 0.53 5.00 16 19 C 0.43 19.94 7.85 87.66 0.69 20.63 16 20 O -0.62 -31.56 15.24 -3.06 -0.05 -31.61 16 21 N -0.56 -28.07 5.29 -306.98 -1.62 -29.70 16 22 C -0.34 -18.42 9.68 84.04 0.81 -17.61 16 23 H 0.09 5.05 7.16 -2.91 -0.02 5.03 16 24 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 25 N -0.92 -48.74 13.05 21.66 0.28 -48.46 16 26 Si 1.00 41.59 29.55 68.60 2.03 43.62 16 27 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 28 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 29 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 30 H 0.07 0.81 8.01 -2.39 -0.02 0.79 16 31 H 0.07 0.91 5.54 -2.39 -0.01 0.90 16 32 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.07 1.49 8.14 -2.39 -0.02 1.48 16 34 H 0.08 1.65 7.43 -2.39 -0.02 1.63 16 35 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.06 1.09 7.96 -2.39 -0.02 1.07 16 37 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.07 1.12 7.88 -2.39 -0.02 1.10 16 45 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.42 13.00 6.80 -92.71 -0.63 12.37 16 47 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 48 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 49 H 0.40 19.32 7.90 -92.71 -0.73 18.58 16 50 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 Total: -1.00 -68.00 397.15 2.11 -65.89 By element: Atomic # 1 Polarization: 44.08 SS G_CDS: -0.42 Total: 43.66 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: 5.33 Total: 16.20 kcal Atomic # 7 Polarization: -99.94 SS G_CDS: -3.86 Total: -103.79 kcal Atomic # 8 Polarization: -64.61 SS G_CDS: -0.96 Total: -65.57 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -68.00 2.11 -65.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343538439.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.865 kcal (2) G-P(sol) polarization free energy of solvation -67.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds