Wall clock time and date at job start Tue Mar 31 2020 16:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47395 * 2 1 4 4 H 1.09002 * 109.47378 * 54.72786 * 3 2 1 5 5 O 1.42897 * 109.47187 * 294.73071 * 3 2 1 6 6 C 1.42898 * 114.00313 * 150.71692 * 5 3 2 7 7 H 1.09003 * 109.47201 * 32.08354 * 6 5 3 8 8 C 1.52997 * 109.47281 * 272.08273 * 6 5 3 9 9 C 1.52997 * 109.47229 * 179.97438 * 8 6 5 10 10 C 1.53008 * 109.47153 * 60.00337 * 9 8 6 11 11 C 1.53007 * 109.46511 * 299.99656 * 10 9 8 12 12 H 1.08994 * 109.47337 * 300.00257 * 11 10 9 13 13 C 1.52999 * 109.46476 * 179.97438 * 11 10 9 14 14 C 1.52997 * 109.47131 * 60.00330 * 11 10 9 15 15 C 1.50697 * 109.47267 * 174.73116 * 3 2 1 16 16 O 1.21281 * 120.00165 * 120.00071 * 15 3 2 17 17 N 1.34783 * 119.99558 * 299.99848 * 15 3 2 18 18 C 1.46498 * 119.99672 * 180.02562 * 17 15 3 19 19 C 1.50701 * 109.47182 * 180.02562 * 18 17 15 20 20 O 1.21298 * 119.99779 * 359.97438 * 19 18 17 21 21 N 1.34779 * 120.00149 * 180.02562 * 19 18 17 22 22 C 1.37095 * 119.99606 * 179.97438 * 21 19 18 23 23 H 1.07993 * 120.00601 * 359.97438 * 22 21 19 24 24 C 1.38948 * 119.99539 * 179.97438 * 22 21 19 25 25 N 1.31416 * 120.00281 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 120.00095 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.46785 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47549 * 120.00022 * 26 24 22 29 29 H 1.48503 * 109.47262 * 240.00386 * 26 24 22 30 30 H 1.09006 * 109.47055 * 296.56083 * 1 2 3 31 31 H 1.09007 * 109.47213 * 56.55419 * 1 2 3 32 32 H 1.08994 * 109.47216 * 176.55962 * 1 2 3 33 33 H 1.09002 * 109.46885 * 240.00170 * 2 1 3 34 34 H 1.09001 * 109.47158 * 120.00121 * 2 1 3 35 35 H 1.08998 * 109.47251 * 59.99842 * 8 6 5 36 36 H 1.09003 * 109.47069 * 300.00161 * 8 6 5 37 37 H 1.09000 * 109.47578 * 179.97438 * 9 8 6 38 38 H 1.09003 * 109.47499 * 300.00232 * 9 8 6 39 39 H 1.08994 * 109.47005 * 59.99756 * 10 9 8 40 40 H 1.09005 * 109.47012 * 180.02562 * 10 9 8 41 41 H 1.09003 * 109.47642 * 300.00024 * 13 11 10 42 42 H 1.09000 * 109.47211 * 60.00246 * 13 11 10 43 43 H 1.09004 * 109.46958 * 180.02562 * 13 11 10 44 44 H 1.08991 * 109.47388 * 179.97438 * 14 11 10 45 45 H 1.09003 * 109.47499 * 59.99381 * 14 11 10 46 46 H 0.96999 * 120.00123 * 359.97438 * 17 15 3 47 47 H 1.09006 * 109.47106 * 300.00140 * 18 17 15 48 48 H 1.08999 * 109.47434 * 60.00011 * 18 17 15 49 49 H 0.96997 * 119.99725 * 359.97438 * 21 19 18 50 50 H 0.96999 * 120.00176 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6017 1.9829 0.8390 5 8 1.6675 2.0795 -1.2237 6 6 1.4767 3.4910 -1.1096 7 1 2.1517 3.8889 -0.3518 8 6 0.0295 3.7791 -0.7054 9 6 -0.1745 5.2904 -0.5826 10 6 0.1212 5.9560 -1.9282 11 6 1.5685 5.6679 -2.3324 12 1 2.2434 6.0653 -1.5744 13 6 1.8640 6.3329 -3.6783 14 6 1.7726 4.1566 -2.4552 15 6 3.5414 1.4444 0.1305 16 8 4.2250 1.9423 -0.7388 17 7 4.1244 0.8929 1.2133 18 6 5.5838 0.8953 1.3405 19 6 5.9768 0.2229 2.6306 20 8 5.1218 -0.2148 3.3713 21 7 7.2782 0.1088 2.9620 22 6 7.6356 -0.5024 4.1359 23 1 6.8744 -0.8921 4.7954 24 6 8.9773 -0.6205 4.4772 25 7 9.9037 -0.1467 3.6745 26 14 9.4644 -1.4539 6.0765 27 1 8.2431 -1.8975 6.7954 28 1 10.3203 -2.6309 5.7807 29 1 10.2170 -0.4954 6.9251 30 1 -0.3633 0.4595 0.9193 31 1 -0.3634 0.5664 -0.8575 32 1 -0.3633 -1.0258 -0.0617 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 -0.1811 3.3054 0.2534 36 1 -0.6454 3.3813 -1.4632 37 1 -1.2057 5.4958 -0.2951 38 1 0.5004 5.6879 0.1754 39 1 -0.5537 5.5586 -2.6862 40 1 -0.0238 7.0328 -1.8406 41 1 1.1891 5.9351 -4.4362 42 1 1.7185 7.4096 -3.5913 43 1 2.8950 6.1274 -3.9665 44 1 2.8034 3.9514 -2.7435 45 1 1.0976 3.7591 -3.2132 46 1 3.5776 0.4951 1.9088 47 1 6.0225 0.3552 0.5014 48 1 5.9469 1.9231 1.3407 49 1 7.9619 0.4592 2.3698 50 1 10.8404 -0.2288 3.9130 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343538442.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:22 Heat of formation + Delta-G solvation = -159.486128 kcal Electronic energy + Delta-G solvation = -28378.323496 eV Core-core repulsion = 24403.983019 eV Total energy + Delta-G solvation = -3974.340477 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.24939 -39.10172 -38.17342 -36.83110 -34.54470 -33.96115 -33.34005 -32.47960 -31.40089 -29.99531 -28.54633 -26.64598 -26.38022 -24.37469 -22.66774 -22.14380 -21.57820 -20.18475 -19.90612 -19.60493 -18.17661 -17.41354 -17.12413 -15.88176 -15.61724 -15.33244 -15.10778 -15.01857 -14.74461 -14.53977 -14.26875 -14.18652 -14.01098 -13.81589 -13.53489 -13.34025 -13.04147 -12.66505 -12.54285 -12.23576 -12.15993 -12.06132 -11.94241 -11.89900 -11.65471 -11.32535 -11.27154 -11.22356 -11.15748 -10.95248 -10.80921 -10.65296 -10.51608 -10.42714 -10.34485 -10.02951 -9.66966 -9.14776 -8.81108 -8.65610 -8.12467 -6.53616 -3.95729 2.74755 3.08626 3.14720 3.21491 3.28214 3.59964 3.71496 4.09541 4.42390 4.48623 4.65420 4.70516 4.75979 4.83943 4.87794 4.89614 4.98472 5.02959 5.14767 5.16050 5.21550 5.26363 5.33454 5.40679 5.43184 5.47225 5.60306 5.61891 5.73065 5.78037 5.80098 5.84262 5.88749 5.91058 5.93913 5.95800 5.98052 6.03133 6.04789 6.15061 6.19873 6.23439 6.65075 7.05978 7.44185 7.78805 7.89978 8.40602 8.44715 9.02422 9.36992 9.84593 10.63311 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.018564 B = 0.002298 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.973821 B =12182.493540 C =12976.894640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C 0.079 3.921 4 H 0.085 0.915 5 O -0.347 6.347 6 C 0.092 3.908 7 H 0.059 0.941 8 C -0.142 4.142 9 C -0.118 4.118 10 C -0.115 4.115 11 C -0.091 4.091 12 H 0.071 0.929 13 C -0.146 4.146 14 C -0.107 4.107 15 C 0.486 3.514 16 O -0.534 6.534 17 N -0.706 5.706 18 C 0.108 3.892 19 C 0.428 3.572 20 O -0.598 6.598 21 N -0.549 5.549 22 C -0.304 4.304 23 H 0.106 0.894 24 C 0.025 3.975 25 N -0.894 5.894 26 Si 0.933 3.067 27 H -0.267 1.267 28 H -0.280 1.280 29 H -0.280 1.280 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.057 0.943 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.410 0.590 47 H 0.083 0.917 48 H 0.082 0.918 49 H 0.396 0.604 50 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.070 9.461 -11.032 23.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C 0.017 3.983 4 H 0.103 0.897 5 O -0.264 6.264 6 C 0.034 3.966 7 H 0.077 0.923 8 C -0.180 4.180 9 C -0.156 4.156 10 C -0.153 4.153 11 C -0.109 4.109 12 H 0.089 0.911 13 C -0.203 4.203 14 C -0.144 4.144 15 C 0.270 3.730 16 O -0.411 6.411 17 N -0.362 5.362 18 C -0.019 4.019 19 C 0.214 3.786 20 O -0.484 6.484 21 N -0.184 5.184 22 C -0.434 4.434 23 H 0.124 0.876 24 C -0.178 4.178 25 N -0.534 5.534 26 Si 0.759 3.241 27 H -0.191 1.191 28 H -0.206 1.206 29 H -0.206 1.206 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.093 0.907 45 H 0.087 0.913 46 H 0.248 0.752 47 H 0.101 0.899 48 H 0.100 0.900 49 H 0.230 0.770 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.938 9.429 -11.322 23.994 hybrid contribution 0.739 -0.244 1.039 1.298 sum -18.198 9.184 -10.283 22.831 Atomic orbital electron populations 1.21725 0.94539 1.02069 1.02193 1.21616 0.97199 0.92895 1.03899 1.22046 0.90689 0.96350 0.89232 0.89688 1.87993 1.87896 1.20214 1.30327 1.22132 0.94988 0.81113 0.98373 0.92263 1.22093 0.97545 0.96401 1.01923 1.21495 1.01543 0.94830 0.97687 1.21636 0.96356 1.00187 0.97116 1.21107 0.96851 0.94959 0.98002 0.91097 1.21803 1.01797 1.00116 0.96591 1.21578 1.03021 0.93703 0.96139 1.21349 0.91262 0.78554 0.81789 1.90688 1.64968 1.45227 1.40175 1.45777 1.07576 1.59721 1.23124 1.20951 0.81217 1.01758 0.97993 1.19742 0.84011 0.86486 0.88386 1.90493 1.49575 1.54690 1.53684 1.41810 1.05190 1.50612 1.20755 1.19777 0.92424 1.33806 0.97381 0.87604 1.25338 0.95368 0.97485 0.99579 1.69624 1.01286 1.45325 1.37214 0.85755 0.78770 0.78692 0.80857 1.19121 1.20587 1.20605 0.92765 0.91811 0.92293 0.90373 0.89748 0.91876 0.91072 0.91696 0.91903 0.91834 0.91961 0.92674 0.92699 0.92438 0.90673 0.91345 0.75202 0.89852 0.89958 0.77036 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.85 37.16 0.37 -0.93 16 2 C -0.12 -1.28 5.59 -26.73 -0.15 -1.43 16 3 C 0.08 0.98 2.30 -27.88 -0.06 0.91 16 4 H 0.09 0.91 7.44 -51.93 -0.39 0.52 16 5 O -0.35 -4.53 8.68 -55.14 -0.48 -5.01 16 6 C 0.09 1.03 2.34 -26.73 -0.06 0.96 16 7 H 0.06 0.73 7.81 -51.93 -0.41 0.33 16 8 C -0.14 -1.25 5.48 -26.73 -0.15 -1.39 16 9 C -0.12 -0.90 5.92 -26.73 -0.16 -1.06 16 10 C -0.12 -0.85 5.20 -26.72 -0.14 -0.99 16 11 C -0.09 -0.78 2.72 -90.62 -0.25 -1.03 16 12 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 13 C -0.15 -1.11 9.19 37.16 0.34 -0.77 16 14 C -0.11 -1.13 4.85 -26.73 -0.13 -1.26 16 15 C 0.49 7.79 7.13 -10.98 -0.08 7.71 16 16 O -0.53 -10.30 16.45 -14.35 -0.24 -10.54 16 17 N -0.71 -11.66 5.39 -61.47 -0.33 -11.99 16 18 C 0.11 2.01 6.15 -5.19 -0.03 1.97 16 19 C 0.43 9.75 7.85 -10.98 -0.09 9.66 16 20 O -0.60 -15.09 15.24 5.54 0.08 -15.00 16 21 N -0.55 -13.57 5.29 -10.96 -0.06 -13.63 16 22 C -0.30 -8.23 9.68 -14.93 -0.14 -8.38 16 23 H 0.11 2.98 7.16 -52.49 -0.38 2.61 16 24 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 25 N -0.89 -23.84 13.05 55.50 0.72 -23.12 16 26 Si 0.93 20.44 29.55 -169.99 -5.02 15.41 16 27 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 28 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 29 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.58 7.74 -51.93 -0.40 0.18 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.08 0.88 7.42 -51.93 -0.39 0.50 16 35 H 0.06 0.53 7.77 -51.93 -0.40 0.13 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.41 6.54 6.79 -40.82 -0.28 6.26 16 47 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 48 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 49 H 0.40 9.44 7.90 -40.82 -0.32 9.12 16 50 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 403.36 15.07 6.08 6.08 Total: -1.00 -30.96 403.36 -8.92 -39.88 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: -8.86 Total: 13.37 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -0.83 Total: 4.55 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: 0.34 Total: -48.74 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: -0.63 Total: -30.55 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -30.96 -8.92 -39.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343538442.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.605 kcal (2) G-P(sol) polarization free energy of solvation -30.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds