Wall clock time and date at job start Tue Mar 31 2020 16:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47395 * 2 1 4 4 H 1.09002 * 109.47378 * 54.72786 * 3 2 1 5 5 O 1.42897 * 109.47187 * 294.73071 * 3 2 1 6 6 C 1.42898 * 114.00313 * 150.71692 * 5 3 2 7 7 H 1.09003 * 109.47201 * 32.08354 * 6 5 3 8 8 C 1.52997 * 109.47281 * 272.08273 * 6 5 3 9 9 C 1.52997 * 109.47229 * 179.97438 * 8 6 5 10 10 C 1.53008 * 109.47153 * 60.00337 * 9 8 6 11 11 C 1.53007 * 109.46511 * 299.99656 * 10 9 8 12 12 H 1.08994 * 109.47337 * 300.00257 * 11 10 9 13 13 C 1.52999 * 109.46476 * 179.97438 * 11 10 9 14 14 C 1.52997 * 109.47131 * 60.00330 * 11 10 9 15 15 C 1.50697 * 109.47267 * 174.73116 * 3 2 1 16 16 O 1.21281 * 120.00165 * 120.00071 * 15 3 2 17 17 N 1.34783 * 119.99558 * 299.99848 * 15 3 2 18 18 C 1.46498 * 119.99672 * 180.02562 * 17 15 3 19 19 C 1.50701 * 109.47182 * 180.02562 * 18 17 15 20 20 O 1.21298 * 119.99779 * 359.97438 * 19 18 17 21 21 N 1.34779 * 120.00149 * 180.02562 * 19 18 17 22 22 C 1.37095 * 119.99606 * 179.97438 * 21 19 18 23 23 H 1.07993 * 120.00601 * 359.97438 * 22 21 19 24 24 C 1.38948 * 119.99539 * 179.97438 * 22 21 19 25 25 N 1.31416 * 120.00281 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 120.00095 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.46785 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47549 * 120.00022 * 26 24 22 29 29 H 1.48503 * 109.47262 * 240.00386 * 26 24 22 30 30 H 1.09006 * 109.47055 * 296.56083 * 1 2 3 31 31 H 1.09007 * 109.47213 * 56.55419 * 1 2 3 32 32 H 1.08994 * 109.47216 * 176.55962 * 1 2 3 33 33 H 1.09002 * 109.46885 * 240.00170 * 2 1 3 34 34 H 1.09001 * 109.47158 * 120.00121 * 2 1 3 35 35 H 1.08998 * 109.47251 * 59.99842 * 8 6 5 36 36 H 1.09003 * 109.47069 * 300.00161 * 8 6 5 37 37 H 1.09000 * 109.47578 * 179.97438 * 9 8 6 38 38 H 1.09003 * 109.47499 * 300.00232 * 9 8 6 39 39 H 1.08994 * 109.47005 * 59.99756 * 10 9 8 40 40 H 1.09005 * 109.47012 * 180.02562 * 10 9 8 41 41 H 1.09003 * 109.47642 * 300.00024 * 13 11 10 42 42 H 1.09000 * 109.47211 * 60.00246 * 13 11 10 43 43 H 1.09004 * 109.46958 * 180.02562 * 13 11 10 44 44 H 1.08991 * 109.47388 * 179.97438 * 14 11 10 45 45 H 1.09003 * 109.47499 * 59.99381 * 14 11 10 46 46 H 0.96999 * 120.00123 * 359.97438 * 17 15 3 47 47 H 1.09006 * 109.47106 * 300.00140 * 18 17 15 48 48 H 1.08999 * 109.47434 * 60.00011 * 18 17 15 49 49 H 0.96997 * 119.99725 * 359.97438 * 21 19 18 50 50 H 0.96999 * 120.00176 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6017 1.9829 0.8390 5 8 1.6675 2.0795 -1.2237 6 6 1.4767 3.4910 -1.1096 7 1 2.1517 3.8889 -0.3518 8 6 0.0295 3.7791 -0.7054 9 6 -0.1745 5.2904 -0.5826 10 6 0.1212 5.9560 -1.9282 11 6 1.5685 5.6679 -2.3324 12 1 2.2434 6.0653 -1.5744 13 6 1.8640 6.3329 -3.6783 14 6 1.7726 4.1566 -2.4552 15 6 3.5414 1.4444 0.1305 16 8 4.2250 1.9423 -0.7388 17 7 4.1244 0.8929 1.2133 18 6 5.5838 0.8953 1.3405 19 6 5.9768 0.2229 2.6306 20 8 5.1218 -0.2148 3.3713 21 7 7.2782 0.1088 2.9620 22 6 7.6356 -0.5024 4.1359 23 1 6.8744 -0.8921 4.7954 24 6 8.9773 -0.6205 4.4772 25 7 9.9037 -0.1467 3.6745 26 14 9.4644 -1.4539 6.0765 27 1 8.2431 -1.8975 6.7954 28 1 10.3203 -2.6309 5.7807 29 1 10.2170 -0.4954 6.9251 30 1 -0.3633 0.4595 0.9193 31 1 -0.3634 0.5664 -0.8575 32 1 -0.3633 -1.0258 -0.0617 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 -0.1811 3.3054 0.2534 36 1 -0.6454 3.3813 -1.4632 37 1 -1.2057 5.4958 -0.2951 38 1 0.5004 5.6879 0.1754 39 1 -0.5537 5.5586 -2.6862 40 1 -0.0238 7.0328 -1.8406 41 1 1.1891 5.9351 -4.4362 42 1 1.7185 7.4096 -3.5913 43 1 2.8950 6.1274 -3.9665 44 1 2.8034 3.9514 -2.7435 45 1 1.0976 3.7591 -3.2132 46 1 3.5776 0.4951 1.9088 47 1 6.0225 0.3552 0.5014 48 1 5.9469 1.9231 1.3407 49 1 7.9619 0.4592 2.3698 50 1 10.8404 -0.2288 3.9130 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343538442.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:21 Heat of formation + Delta-G solvation = -178.262252 kcal Electronic energy + Delta-G solvation = -28379.137690 eV Core-core repulsion = 24403.983019 eV Total energy + Delta-G solvation = -3975.154671 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.43733 -40.36831 -39.67869 -37.82729 -36.28202 -35.47842 -34.40436 -33.38688 -33.16386 -30.78275 -29.93753 -27.73272 -27.30558 -26.13486 -23.44147 -23.05760 -22.36484 -21.41863 -21.35593 -20.67977 -20.10223 -18.81549 -18.14833 -17.37111 -16.99063 -16.66991 -16.44151 -16.29708 -15.96334 -15.77502 -15.43157 -15.28452 -15.09642 -15.03871 -14.64464 -14.31768 -14.00832 -13.80781 -13.61094 -13.56884 -13.34350 -13.26623 -12.95100 -12.90994 -12.81849 -12.75023 -12.46087 -12.11873 -12.10850 -12.04024 -11.89493 -11.77463 -11.63157 -11.59486 -11.39586 -11.26487 -10.95167 -10.59144 -10.26090 -10.24112 -10.10541 -8.52726 -6.03083 1.33849 1.42206 1.46724 1.56258 1.87984 1.89386 2.28893 2.59576 3.09027 3.14368 3.59350 3.69396 3.78326 3.86629 3.90616 3.98222 4.16859 4.19524 4.20424 4.24334 4.36922 4.38234 4.39635 4.51327 4.52263 4.58041 4.65222 4.76244 4.82359 4.85569 4.97184 5.03146 5.08840 5.10775 5.14087 5.18152 5.21661 5.27795 5.30367 5.37221 5.38058 5.42038 5.43557 5.55123 5.89818 6.09521 6.43643 6.49865 7.01553 7.10254 7.41947 7.91515 8.64444 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.018564 B = 0.002298 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.973821 B =12182.493540 C =12976.894640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C 0.085 3.915 4 H 0.108 0.892 5 O -0.360 6.360 6 C 0.086 3.914 7 H 0.043 0.957 8 C -0.134 4.134 9 C -0.117 4.117 10 C -0.112 4.112 11 C -0.089 4.089 12 H 0.061 0.939 13 C -0.144 4.144 14 C -0.104 4.104 15 C 0.485 3.515 16 O -0.570 6.570 17 N -0.703 5.703 18 C 0.120 3.880 19 C 0.434 3.566 20 O -0.621 6.621 21 N -0.560 5.560 22 C -0.335 4.335 23 H 0.088 0.912 24 C -0.012 4.012 25 N -0.917 5.917 26 Si 0.998 3.002 27 H -0.269 1.269 28 H -0.271 1.271 29 H -0.271 1.271 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.058 0.942 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.047 0.953 44 H 0.046 0.954 45 H 0.071 0.929 46 H 0.415 0.585 47 H 0.091 0.909 48 H 0.091 0.909 49 H 0.398 0.602 50 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.710 9.856 -10.689 25.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 C 0.023 3.977 4 H 0.125 0.875 5 O -0.278 6.278 6 C 0.029 3.971 7 H 0.061 0.939 8 C -0.172 4.172 9 C -0.155 4.155 10 C -0.149 4.149 11 C -0.108 4.108 12 H 0.079 0.921 13 C -0.201 4.201 14 C -0.142 4.142 15 C 0.272 3.728 16 O -0.449 6.449 17 N -0.359 5.359 18 C -0.008 4.008 19 C 0.221 3.779 20 O -0.509 6.509 21 N -0.195 5.195 22 C -0.465 4.465 23 H 0.106 0.894 24 C -0.213 4.213 25 N -0.557 5.557 26 Si 0.821 3.179 27 H -0.193 1.193 28 H -0.197 1.197 29 H -0.196 1.196 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.090 0.910 46 H 0.253 0.747 47 H 0.109 0.891 48 H 0.109 0.891 49 H 0.232 0.768 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.592 9.832 -10.992 25.328 hybrid contribution 1.244 -0.347 0.872 1.558 sum -19.348 9.486 -10.119 23.806 Atomic orbital electron populations 1.21690 0.92579 1.02897 1.02751 1.21640 0.98834 0.91431 1.03497 1.22135 0.87832 0.97777 0.89927 0.87490 1.87987 1.87693 1.21240 1.30868 1.22286 0.96467 0.80190 0.98158 0.93902 1.22033 0.95432 0.97462 1.02286 1.21515 1.02466 0.93781 0.97693 1.21619 0.95090 1.01044 0.97149 1.21100 0.97905 0.93380 0.98366 0.92089 1.21793 1.01364 1.00855 0.96136 1.21563 1.01282 0.95298 0.96047 1.22108 0.92822 0.77182 0.80688 1.90672 1.66158 1.46731 1.41311 1.45779 1.06631 1.59920 1.23585 1.20767 0.82721 1.01710 0.95586 1.20359 0.83159 0.85260 0.89130 1.90470 1.50108 1.55453 1.54912 1.41864 1.05949 1.51146 1.20554 1.19780 0.92729 1.35543 0.98412 0.89437 1.26156 0.94862 0.97602 1.02632 1.69690 1.01721 1.45731 1.38581 0.84800 0.78269 0.77935 0.76910 1.19303 1.19667 1.19645 0.91473 0.92055 0.91257 0.91553 0.89404 0.91191 0.90617 0.89975 0.92338 0.91203 0.90684 0.92035 0.91431 0.93427 0.93520 0.90995 0.74670 0.89105 0.89059 0.76779 0.91068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.85 71.98 0.71 -1.48 16 2 C -0.12 -2.37 5.59 30.59 0.17 -2.20 16 3 C 0.08 2.04 2.30 29.85 0.07 2.11 16 4 H 0.11 2.11 7.44 -2.39 -0.02 2.09 16 5 O -0.36 -9.26 8.68 -129.94 -1.13 -10.39 16 6 C 0.09 1.90 2.34 30.59 0.07 1.97 16 7 H 0.04 1.07 7.81 -2.39 -0.02 1.05 16 8 C -0.13 -2.11 5.48 30.59 0.17 -1.95 16 9 C -0.12 -1.52 5.92 30.60 0.18 -1.34 16 10 C -0.11 -1.42 5.20 30.60 0.16 -1.26 16 11 C -0.09 -1.48 2.72 -10.79 -0.03 -1.51 16 12 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 13 C -0.14 -2.09 9.19 71.98 0.66 -1.43 16 14 C -0.10 -2.22 4.85 30.59 0.15 -2.08 16 15 C 0.49 15.51 7.13 87.65 0.63 16.13 16 16 O -0.57 -22.34 16.45 16.01 0.26 -22.08 16 17 N -0.70 -23.02 5.39 -466.78 -2.51 -25.54 16 18 C 0.12 4.44 6.15 85.63 0.53 4.97 16 19 C 0.43 19.93 7.85 87.66 0.69 20.62 16 20 O -0.62 -31.60 15.24 -3.08 -0.05 -31.65 16 21 N -0.56 -28.10 5.29 -306.98 -1.62 -29.72 16 22 C -0.34 -18.39 9.68 84.04 0.81 -17.58 16 23 H 0.09 5.04 7.16 -2.91 -0.02 5.02 16 24 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16 25 N -0.92 -48.78 13.05 21.66 0.28 -48.50 16 26 Si 1.00 41.57 29.55 68.60 2.03 43.60 16 27 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 28 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 29 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 30 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.06 0.99 7.74 -2.38 -0.02 0.97 16 32 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.09 1.73 7.42 -2.39 -0.02 1.71 16 35 H 0.07 1.01 7.77 -2.39 -0.02 0.99 16 36 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 41 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.41 12.99 6.79 -92.71 -0.63 12.36 16 47 H 0.09 3.26 8.14 -2.38 -0.02 3.24 16 48 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 49 H 0.40 19.32 7.90 -92.71 -0.73 18.59 16 50 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 Total: -1.00 -66.47 403.36 2.26 -64.22 By element: Atomic # 1 Polarization: 45.66 SS G_CDS: -0.43 Total: 45.23 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: 5.43 Total: 14.83 kcal Atomic # 7 Polarization: -99.90 SS G_CDS: -3.85 Total: -103.76 kcal Atomic # 8 Polarization: -63.20 SS G_CDS: -0.91 Total: -64.11 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Total: -66.47 2.26 -64.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343538442.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.046 kcal (2) G-P(sol) polarization free energy of solvation -66.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds