Wall clock time and date at job start Tue Mar 31 2020 16:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34232 * 117.00091 * 2 1 4 4 O 1.20821 * 119.99674 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99949 * 180.02562 * 3 2 1 6 6 N 1.46508 * 109.46836 * 183.76183 * 5 3 2 7 7 C 1.36937 * 119.99889 * 90.86127 * 6 5 3 8 8 H 1.07997 * 119.99935 * 168.70898 * 7 6 5 9 9 C 1.38815 * 119.99568 * 348.70958 * 7 6 5 10 10 N 1.31613 * 120.00812 * 327.93046 * 9 7 6 11 11 Si 1.86804 * 119.99519 * 147.93343 * 9 7 6 12 12 H 1.48499 * 109.47702 * 94.98624 * 11 9 7 13 13 H 1.48501 * 109.47094 * 214.98559 * 11 9 7 14 14 H 1.48503 * 109.47494 * 334.98390 * 11 9 7 15 15 C 1.46499 * 120.00017 * 270.86057 * 6 5 3 16 16 C 1.50695 * 109.47308 * 274.06401 * 15 6 5 17 17 O 1.21281 * 119.99853 * 355.80417 * 16 15 6 18 18 N 1.34778 * 120.00305 * 175.79749 * 16 15 6 19 19 C 1.46497 * 119.99785 * 0.02562 * 18 16 15 20 20 C 1.52998 * 109.47162 * 119.99283 * 19 18 16 21 21 C 1.53003 * 109.47299 * 239.99897 * 19 18 16 22 22 C 1.46502 * 120.00050 * 180.02562 * 18 16 15 23 23 C 1.54968 * 110.92176 * 306.54090 * 22 18 16 24 24 C 1.54271 * 104.15668 * 156.29550 * 23 22 18 25 25 C 1.53875 * 106.63861 * 336.45008 * 24 23 22 26 26 C 1.54261 * 106.60085 * 359.97130 * 25 24 23 27 27 H 1.08995 * 109.47077 * 300.00029 * 1 2 3 28 28 H 1.08992 * 109.47573 * 60.00465 * 1 2 3 29 29 H 1.09006 * 109.46941 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47420 * 63.76805 * 5 3 2 31 31 H 1.08994 * 109.47439 * 303.76031 * 5 3 2 32 32 H 0.96994 * 120.00396 * 180.02562 * 10 9 7 33 33 H 1.09007 * 109.46614 * 154.06411 * 15 6 5 34 34 H 1.08998 * 109.47410 * 34.06978 * 15 6 5 35 35 H 1.09007 * 109.47100 * 359.97438 * 19 18 16 36 36 H 1.09005 * 109.47015 * 60.00180 * 20 19 18 37 37 H 1.08999 * 109.47316 * 179.97438 * 20 19 18 38 38 H 1.08999 * 109.47670 * 300.00125 * 20 19 18 39 39 H 1.09000 * 109.46828 * 59.99683 * 21 19 18 40 40 H 1.08999 * 109.47228 * 180.02562 * 21 19 18 41 41 H 1.09002 * 109.46428 * 300.00164 * 21 19 18 42 42 H 1.08996 * 110.66981 * 183.23860 * 22 18 16 43 43 H 1.09003 * 110.47385 * 37.64882 * 23 22 18 44 44 H 1.08992 * 110.53149 * 274.97879 * 23 22 18 45 45 H 1.08997 * 110.03003 * 217.13677 * 24 23 22 46 46 H 1.09003 * 110.02745 * 95.75626 * 24 23 22 47 47 H 1.08996 * 110.03263 * 119.26270 * 25 24 23 48 48 H 1.09004 * 110.02842 * 240.64033 * 25 24 23 49 49 H 1.09005 * 110.48428 * 142.29124 * 26 25 24 50 50 H 1.09003 * 110.48545 * 264.93485 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9818 2.6768 0.0902 7 6 4.1977 3.2490 1.3154 8 1 4.6753 4.2152 1.3835 9 6 3.8025 2.5870 2.4698 10 7 2.7398 1.8108 2.4524 11 14 4.7793 2.7980 4.0481 12 1 4.1614 3.8665 4.8737 13 1 4.7754 1.5216 4.8070 14 1 6.1777 3.1736 3.7184 15 6 4.1665 3.4665 -1.1299 16 6 5.5629 3.2581 -1.6567 17 8 6.3527 2.5834 -1.0307 18 7 5.9340 3.8213 -2.8235 19 6 4.9801 4.6367 -3.5794 20 6 5.5324 6.0550 -3.7349 21 6 4.7645 4.0187 -4.9624 22 6 7.2914 3.6182 -3.3359 23 6 8.3486 4.0044 -2.2707 24 6 9.6021 3.2010 -2.6745 25 6 9.1084 1.9988 -3.4984 26 6 7.5715 2.1124 -3.5664 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5137 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.9526 0.8405 -0.9226 31 1 3.9594 0.7234 0.8535 32 1 2.4635 1.3486 3.2592 33 1 4.0167 4.5226 -0.9051 34 1 3.4435 3.1490 -1.8812 35 1 4.0302 4.6728 -3.0459 36 1 6.4822 6.0186 -4.2686 37 1 4.8229 6.6616 -4.2977 38 1 5.6860 6.4953 -2.7497 39 1 4.3710 3.0083 -4.8514 40 1 4.0551 4.6256 -5.5249 41 1 5.7143 3.9823 -5.4960 42 1 7.4447 4.1847 -4.2544 43 1 8.0121 3.7119 -1.2760 44 1 8.5535 5.0743 -2.3058 45 1 10.1259 2.8536 -1.7840 46 1 10.2643 3.8211 -3.2788 47 1 9.5304 2.0358 -4.5027 48 1 9.3934 1.0679 -3.0081 49 1 7.2091 1.8026 -4.5466 50 1 7.1096 1.5139 -2.7811 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356673185.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:10 Heat of formation + Delta-G solvation = -92.713669 kcal Electronic energy + Delta-G solvation = -30429.387108 eV Core-core repulsion = 26457.942102 eV Total energy + Delta-G solvation = -3971.445006 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.07714 -38.92158 -37.06561 -36.00668 -35.57528 -34.40647 -31.43566 -31.19058 -28.91868 -28.53416 -27.79476 -27.16705 -26.20669 -25.80700 -22.59079 -21.54671 -20.98569 -20.12332 -19.78828 -18.05596 -16.91326 -16.89709 -16.24885 -15.94024 -15.37320 -15.15095 -14.99153 -14.68173 -14.61647 -14.09494 -13.81709 -13.56212 -13.43859 -13.31904 -13.14202 -12.71983 -12.58897 -12.30792 -12.24373 -12.15205 -11.63489 -11.49861 -11.36826 -11.14114 -11.08654 -11.07739 -10.94232 -10.86910 -10.83590 -10.67016 -10.63149 -10.50672 -10.18091 -10.12211 -9.90261 -9.60037 -9.29789 -8.85074 -8.39080 -8.20797 -7.10713 -5.94417 -3.14712 3.28854 3.35251 3.41319 3.49389 3.56660 3.84857 4.05440 4.51720 4.75934 4.77659 4.82009 5.03364 5.10991 5.13033 5.21659 5.32059 5.37057 5.53409 5.55348 5.58419 5.64014 5.74654 5.75399 5.79981 5.81334 5.83476 5.86640 5.92088 6.04886 6.06010 6.07796 6.11994 6.12372 6.19032 6.21787 6.22790 6.29378 6.43177 6.48229 6.63551 6.66755 6.95920 7.12710 7.67854 7.78780 7.90479 8.12402 8.91754 9.01318 9.37253 9.70655 10.10812 11.17115 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.011341 B = 0.004598 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.258645 B = 6088.334781 C = 7154.120779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.382 6.382 3 C 0.466 3.534 4 O -0.506 6.506 5 C 0.193 3.807 6 N -0.541 5.541 7 C -0.254 4.254 8 H 0.079 0.921 9 C 0.008 3.992 10 N -0.888 5.888 11 Si 0.896 3.104 12 H -0.290 1.290 13 H -0.288 1.288 14 H -0.277 1.277 15 C 0.134 3.866 16 C 0.484 3.516 17 O -0.509 6.509 18 N -0.614 5.614 19 C 0.128 3.872 20 C -0.161 4.161 21 C -0.161 4.161 22 C 0.148 3.852 23 C -0.142 4.142 24 C -0.117 4.117 25 C -0.117 4.117 26 C -0.136 4.136 27 H 0.054 0.946 28 H 0.044 0.956 29 H 0.079 0.921 30 H 0.056 0.944 31 H 0.104 0.896 32 H 0.257 0.743 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.096 0.904 36 H 0.055 0.945 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.063 0.937 41 H 0.055 0.945 42 H 0.082 0.918 43 H 0.098 0.902 44 H 0.055 0.945 45 H 0.062 0.938 46 H 0.055 0.945 47 H 0.056 0.944 48 H 0.062 0.938 49 H 0.056 0.944 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.392 2.230 -15.475 16.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.299 6.299 3 C 0.306 3.694 4 O -0.391 6.391 5 C 0.063 3.937 6 N -0.258 5.258 7 C -0.382 4.382 8 H 0.097 0.903 9 C -0.191 4.191 10 N -0.531 5.531 11 Si 0.725 3.275 12 H -0.217 1.217 13 H -0.214 1.214 14 H -0.203 1.203 15 C 0.002 3.998 16 C 0.270 3.730 17 O -0.382 6.382 18 N -0.350 5.350 19 C 0.024 3.976 20 C -0.220 4.220 21 C -0.219 4.219 22 C 0.044 3.956 23 C -0.181 4.181 24 C -0.155 4.155 25 C -0.156 4.156 26 C -0.174 4.174 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.098 0.902 30 H 0.074 0.926 31 H 0.121 0.879 32 H 0.067 0.933 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.114 0.886 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.100 0.900 43 H 0.116 0.884 44 H 0.074 0.926 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.075 0.925 48 H 0.080 0.920 49 H 0.075 0.925 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.490 2.085 -14.932 16.045 hybrid contribution 0.086 0.253 0.881 0.921 sum 5.576 2.338 -14.051 15.297 Atomic orbital electron populations 1.22847 0.79774 1.01272 1.01265 1.86533 1.21008 1.36652 1.85733 1.25449 0.93370 0.80273 0.70308 1.90450 1.66648 1.36414 1.45546 1.20143 0.85542 0.86800 1.01219 1.43489 1.74303 1.06789 1.01245 1.19076 1.33006 1.04320 0.81764 0.90335 1.24645 0.96386 1.00270 0.97774 1.69979 1.20360 1.34186 1.28599 0.86383 0.81012 0.77050 0.83101 1.21744 1.21447 1.20260 1.20730 0.90899 0.97877 0.90278 1.22865 0.92456 0.78566 0.79082 1.90586 1.53376 1.37655 1.56610 1.48357 1.11825 1.52078 1.22737 1.21141 0.93266 0.90243 0.92948 1.22172 1.01263 0.96105 1.02419 1.22173 1.01829 1.01477 0.96437 1.21842 0.81906 0.95697 0.96176 1.22821 0.94384 0.98649 1.02199 1.21993 0.97442 0.96568 0.99532 1.21995 0.95675 0.98595 0.99288 1.22715 0.95792 0.97175 1.01736 0.92730 0.93701 0.90201 0.92600 0.87857 0.93274 0.89880 0.91767 0.88626 0.92586 0.91754 0.92040 0.92158 0.91756 0.92552 0.89965 0.88377 0.92649 0.91958 0.92615 0.92537 0.91966 0.92531 0.89519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 10.56 101.05 1.07 1.84 16 2 O -0.38 -8.42 10.57 -39.26 -0.41 -8.83 16 3 C 0.47 11.44 5.94 36.00 0.21 11.65 16 4 O -0.51 -13.70 15.83 -18.75 -0.30 -13.99 16 5 C 0.19 4.62 5.56 -5.19 -0.03 4.60 16 6 N -0.54 -13.30 1.51 -175.98 -0.27 -13.56 16 7 C -0.25 -6.92 9.59 -15.06 -0.14 -7.06 16 8 H 0.08 2.13 8.00 -52.49 -0.42 1.71 16 9 C 0.01 0.22 4.64 -17.43 -0.08 0.14 16 10 N -0.89 -25.45 9.50 55.49 0.53 -24.92 16 11 Si 0.90 22.08 29.66 -169.99 -5.04 17.03 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 14 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 15 C 0.13 2.66 4.49 -5.20 -0.02 2.64 16 16 C 0.48 8.93 7.03 -10.99 -0.08 8.85 16 17 O -0.51 -11.09 12.50 5.56 0.07 -11.02 16 18 N -0.61 -8.71 2.43 -156.30 -0.38 -9.09 16 19 C 0.13 1.45 3.10 -67.93 -0.21 1.24 16 20 C -0.16 -1.56 9.19 37.16 0.34 -1.22 16 21 C -0.16 -1.53 9.19 37.16 0.34 -1.19 16 22 C 0.15 1.92 2.43 -65.90 -0.16 1.76 16 23 C -0.14 -2.00 6.18 -25.03 -0.15 -2.15 16 24 C -0.12 -1.42 6.80 -25.61 -0.17 -1.60 16 25 C -0.12 -1.39 6.80 -25.62 -0.17 -1.56 16 26 C -0.14 -1.81 6.22 -25.08 -0.16 -1.96 16 27 H 0.05 1.05 8.13 -51.93 -0.42 0.63 16 28 H 0.04 0.75 8.13 -51.93 -0.42 0.33 16 29 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 31 H 0.10 2.70 6.66 -51.93 -0.35 2.36 16 32 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 33 H 0.08 1.61 7.83 -51.93 -0.41 1.21 16 34 H 0.06 1.19 7.53 -51.93 -0.39 0.80 16 35 H 0.10 1.14 5.76 -51.92 -0.30 0.84 16 36 H 0.06 0.51 7.01 -51.93 -0.36 0.15 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.50 7.15 -51.93 -0.37 0.13 16 42 H 0.08 0.91 6.21 -51.93 -0.32 0.59 16 43 H 0.10 1.77 5.64 -51.93 -0.29 1.48 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.09 1.45 6.18 -51.93 -0.32 1.13 16 LS Contribution 391.22 15.07 5.90 5.90 Total: -1.00 -32.73 391.22 -7.91 -40.65 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -8.58 Total: 1.88 kcal Atomic # 6 Polarization: 15.39 SS G_CDS: 0.58 Total: 15.97 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: -0.12 Total: -47.58 kcal Atomic # 8 Polarization: -33.21 SS G_CDS: -0.64 Total: -33.85 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.04 Total: 17.03 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.73 -7.91 -40.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356673185.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.066 kcal (2) G-P(sol) polarization free energy of solvation -32.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds