Wall clock time and date at job start Tue Mar 31 2020 16:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34232 * 117.00091 * 2 1 4 4 O 1.20821 * 119.99674 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99949 * 180.02562 * 3 2 1 6 6 N 1.46508 * 109.46836 * 183.76183 * 5 3 2 7 7 C 1.36937 * 119.99889 * 90.86127 * 6 5 3 8 8 H 1.07997 * 119.99935 * 168.70898 * 7 6 5 9 9 C 1.38815 * 119.99568 * 348.70958 * 7 6 5 10 10 N 1.31613 * 120.00812 * 327.93046 * 9 7 6 11 11 Si 1.86804 * 119.99519 * 147.93343 * 9 7 6 12 12 H 1.48499 * 109.47702 * 94.98624 * 11 9 7 13 13 H 1.48501 * 109.47094 * 214.98559 * 11 9 7 14 14 H 1.48503 * 109.47494 * 334.98390 * 11 9 7 15 15 C 1.46499 * 120.00017 * 270.86057 * 6 5 3 16 16 C 1.50695 * 109.47308 * 274.06401 * 15 6 5 17 17 O 1.21281 * 119.99853 * 355.80417 * 16 15 6 18 18 N 1.34778 * 120.00305 * 175.79749 * 16 15 6 19 19 C 1.46497 * 119.99785 * 0.02562 * 18 16 15 20 20 C 1.52998 * 109.47162 * 119.99283 * 19 18 16 21 21 C 1.53003 * 109.47299 * 239.99897 * 19 18 16 22 22 C 1.46502 * 120.00050 * 180.02562 * 18 16 15 23 23 C 1.54968 * 110.92176 * 306.54090 * 22 18 16 24 24 C 1.54271 * 104.15668 * 156.29550 * 23 22 18 25 25 C 1.53875 * 106.63861 * 336.45008 * 24 23 22 26 26 C 1.54261 * 106.60085 * 359.97130 * 25 24 23 27 27 H 1.08995 * 109.47077 * 300.00029 * 1 2 3 28 28 H 1.08992 * 109.47573 * 60.00465 * 1 2 3 29 29 H 1.09006 * 109.46941 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47420 * 63.76805 * 5 3 2 31 31 H 1.08994 * 109.47439 * 303.76031 * 5 3 2 32 32 H 0.96994 * 120.00396 * 180.02562 * 10 9 7 33 33 H 1.09007 * 109.46614 * 154.06411 * 15 6 5 34 34 H 1.08998 * 109.47410 * 34.06978 * 15 6 5 35 35 H 1.09007 * 109.47100 * 359.97438 * 19 18 16 36 36 H 1.09005 * 109.47015 * 60.00180 * 20 19 18 37 37 H 1.08999 * 109.47316 * 179.97438 * 20 19 18 38 38 H 1.08999 * 109.47670 * 300.00125 * 20 19 18 39 39 H 1.09000 * 109.46828 * 59.99683 * 21 19 18 40 40 H 1.08999 * 109.47228 * 180.02562 * 21 19 18 41 41 H 1.09002 * 109.46428 * 300.00164 * 21 19 18 42 42 H 1.08996 * 110.66981 * 183.23860 * 22 18 16 43 43 H 1.09003 * 110.47385 * 37.64882 * 23 22 18 44 44 H 1.08992 * 110.53149 * 274.97879 * 23 22 18 45 45 H 1.08997 * 110.03003 * 217.13677 * 24 23 22 46 46 H 1.09003 * 110.02745 * 95.75626 * 24 23 22 47 47 H 1.08996 * 110.03263 * 119.26270 * 25 24 23 48 48 H 1.09004 * 110.02842 * 240.64033 * 25 24 23 49 49 H 1.09005 * 110.48428 * 142.29124 * 26 25 24 50 50 H 1.09003 * 110.48545 * 264.93485 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9818 2.6768 0.0902 7 6 4.1977 3.2490 1.3154 8 1 4.6753 4.2152 1.3835 9 6 3.8025 2.5870 2.4698 10 7 2.7398 1.8108 2.4524 11 14 4.7793 2.7980 4.0481 12 1 4.1614 3.8665 4.8737 13 1 4.7754 1.5216 4.8070 14 1 6.1777 3.1736 3.7184 15 6 4.1665 3.4665 -1.1299 16 6 5.5629 3.2581 -1.6567 17 8 6.3527 2.5834 -1.0307 18 7 5.9340 3.8213 -2.8235 19 6 4.9801 4.6367 -3.5794 20 6 5.5324 6.0550 -3.7349 21 6 4.7645 4.0187 -4.9624 22 6 7.2914 3.6182 -3.3359 23 6 8.3486 4.0044 -2.2707 24 6 9.6021 3.2010 -2.6745 25 6 9.1084 1.9988 -3.4984 26 6 7.5715 2.1124 -3.5664 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5137 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.9526 0.8405 -0.9226 31 1 3.9594 0.7234 0.8535 32 1 2.4635 1.3486 3.2592 33 1 4.0167 4.5226 -0.9051 34 1 3.4435 3.1490 -1.8812 35 1 4.0302 4.6728 -3.0459 36 1 6.4822 6.0186 -4.2686 37 1 4.8229 6.6616 -4.2977 38 1 5.6860 6.4953 -2.7497 39 1 4.3710 3.0083 -4.8514 40 1 4.0551 4.6256 -5.5249 41 1 5.7143 3.9823 -5.4960 42 1 7.4447 4.1847 -4.2544 43 1 8.0121 3.7119 -1.2760 44 1 8.5535 5.0743 -2.3058 45 1 10.1259 2.8536 -1.7840 46 1 10.2643 3.8211 -3.2788 47 1 9.5304 2.0358 -4.5027 48 1 9.3934 1.0679 -3.0081 49 1 7.2091 1.8026 -4.5466 50 1 7.1096 1.5139 -2.7811 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356673185.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:09 Heat of formation + Delta-G solvation = -110.551342 kcal Electronic energy + Delta-G solvation = -30430.160607 eV Core-core repulsion = 26457.942102 eV Total energy + Delta-G solvation = -3972.218506 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.37547 -40.76151 -38.43763 -37.33164 -37.05035 -36.31887 -33.42613 -32.25527 -30.55536 -29.57495 -29.32585 -27.93105 -27.68596 -27.53278 -24.34623 -22.67246 -22.23760 -21.61869 -21.11002 -19.43290 -18.84421 -18.25751 -17.86856 -17.44136 -16.98848 -16.89481 -16.47638 -16.13414 -16.07085 -15.53577 -15.12414 -14.96118 -14.73720 -14.56324 -14.46471 -14.02318 -13.90665 -13.80470 -13.50901 -13.46706 -13.03389 -12.83397 -12.72234 -12.65262 -12.47136 -12.44238 -12.31384 -12.13635 -12.03211 -11.98210 -11.95928 -11.91057 -11.77330 -11.67733 -11.38447 -11.20161 -11.15631 -10.63371 -10.22631 -9.40644 -9.05118 -8.04339 -5.24626 1.40669 1.46458 1.57740 1.90045 1.91591 2.07506 2.36117 2.53417 3.15455 3.46205 3.72171 3.76712 3.87019 4.02637 4.11508 4.26839 4.34829 4.39619 4.43201 4.44758 4.48257 4.51401 4.55406 4.61400 4.62795 4.70335 4.72522 4.84296 4.85053 4.87177 4.90587 4.96109 5.02295 5.03050 5.11061 5.12435 5.22904 5.29131 5.37952 5.41130 5.44781 5.57658 5.58577 5.91022 5.99032 6.08904 6.63653 6.93537 7.43846 7.52269 7.73433 8.07873 9.05614 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.011341 B = 0.004598 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.258645 B = 6088.334781 C = 7154.120779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.387 6.387 3 C 0.472 3.528 4 O -0.536 6.536 5 C 0.196 3.804 6 N -0.557 5.557 7 C -0.257 4.257 8 H 0.072 0.928 9 C -0.038 4.038 10 N -0.912 5.912 11 Si 0.953 3.047 12 H -0.288 1.288 13 H -0.289 1.289 14 H -0.281 1.281 15 C 0.134 3.866 16 C 0.488 3.512 17 O -0.548 6.548 18 N -0.603 5.603 19 C 0.118 3.882 20 C -0.155 4.155 21 C -0.154 4.154 22 C 0.149 3.851 23 C -0.144 4.144 24 C -0.114 4.114 25 C -0.114 4.114 26 C -0.135 4.135 27 H 0.035 0.965 28 H 0.056 0.944 29 H 0.125 0.875 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.251 0.749 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.044 0.956 39 H 0.047 0.953 40 H 0.085 0.915 41 H 0.068 0.932 42 H 0.117 0.883 43 H 0.052 0.948 44 H 0.066 0.934 45 H 0.049 0.951 46 H 0.083 0.917 47 H 0.086 0.914 48 H 0.052 0.948 49 H 0.075 0.925 50 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.071 2.876 -18.277 19.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.304 6.304 3 C 0.313 3.687 4 O -0.424 6.424 5 C 0.066 3.934 6 N -0.275 5.275 7 C -0.387 4.387 8 H 0.089 0.911 9 C -0.234 4.234 10 N -0.557 5.557 11 Si 0.782 3.218 12 H -0.215 1.215 13 H -0.215 1.215 14 H -0.207 1.207 15 C 0.004 3.996 16 C 0.274 3.726 17 O -0.425 6.425 18 N -0.337 5.337 19 C 0.015 3.985 20 C -0.213 4.213 21 C -0.212 4.212 22 C 0.046 3.954 23 C -0.182 4.182 24 C -0.152 4.152 25 C -0.152 4.152 26 C -0.173 4.173 27 H 0.054 0.946 28 H 0.075 0.925 29 H 0.143 0.857 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.061 0.939 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.086 0.914 37 H 0.105 0.895 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.104 0.896 41 H 0.087 0.913 42 H 0.134 0.866 43 H 0.071 0.929 44 H 0.085 0.915 45 H 0.067 0.933 46 H 0.102 0.898 47 H 0.104 0.896 48 H 0.071 0.929 49 H 0.094 0.906 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.175 2.752 -17.796 19.037 hybrid contribution -0.164 0.068 1.647 1.657 sum 6.010 2.820 -16.149 17.460 Atomic orbital electron populations 1.23175 0.77170 1.04182 1.00936 1.86483 1.23512 1.35187 1.85170 1.25371 0.93497 0.80418 0.69397 1.90421 1.67346 1.37496 1.47139 1.20030 0.85621 0.86659 1.01053 1.43557 1.74900 1.07228 1.01840 1.19247 1.32022 1.04123 0.83259 0.91056 1.25241 0.97134 1.00910 1.00163 1.70081 1.21407 1.35459 1.28742 0.85489 0.79393 0.76724 0.80213 1.21518 1.21499 1.20651 1.20845 0.92352 0.97291 0.89065 1.22275 0.91312 0.78764 0.80246 1.90587 1.54013 1.39690 1.58252 1.48270 1.13020 1.51000 1.21400 1.21432 0.92267 0.91138 0.93638 1.22122 1.02420 0.94743 1.02026 1.22118 1.03045 1.00954 0.95083 1.22028 0.80498 0.96049 0.96844 1.22752 0.95727 0.99584 1.00187 1.21995 0.96811 0.96849 0.99579 1.22002 0.94516 0.97968 1.00726 1.22661 0.96806 0.96650 1.01211 0.94578 0.92533 0.85692 0.90402 0.90465 0.93912 0.89890 0.90401 0.89633 0.91361 0.89505 0.93708 0.93370 0.89580 0.91312 0.86551 0.92905 0.91497 0.93258 0.89820 0.89583 0.92938 0.90639 0.93536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.36 10.56 113.37 1.20 2.56 16 2 O -0.39 -16.98 10.57 -51.44 -0.54 -17.53 16 3 C 0.47 23.51 5.94 71.24 0.42 23.93 16 4 O -0.54 -29.52 15.83 21.98 0.35 -29.18 16 5 C 0.20 9.69 5.56 85.63 0.48 10.16 16 6 N -0.56 -28.22 1.51 -710.69 -1.08 -29.29 16 7 C -0.26 -14.49 9.59 84.03 0.81 -13.69 16 8 H 0.07 4.01 8.00 -2.91 -0.02 3.99 16 9 C -0.04 -2.19 4.64 84.86 0.39 -1.79 16 10 N -0.91 -53.72 9.50 21.65 0.21 -53.52 16 11 Si 0.95 46.87 29.66 68.60 2.03 48.90 16 12 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 13 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 14 H -0.28 -13.82 7.11 99.48 0.71 -13.11 16 15 C 0.13 5.46 4.49 85.63 0.38 5.85 16 16 C 0.49 18.34 7.03 87.66 0.62 18.96 16 17 O -0.55 -24.93 12.50 -3.03 -0.04 -24.97 16 18 N -0.60 -16.54 2.43 -766.81 -1.87 -18.41 16 19 C 0.12 2.44 3.10 44.99 0.14 2.58 16 20 C -0.16 -2.56 9.19 71.98 0.66 -1.90 16 21 C -0.15 -2.42 9.19 71.98 0.66 -1.76 16 22 C 0.15 3.58 2.43 46.31 0.11 3.69 16 23 C -0.14 -3.93 6.18 31.70 0.20 -3.74 16 24 C -0.11 -2.58 6.80 31.32 0.21 -2.37 16 25 C -0.11 -2.47 6.80 31.32 0.21 -2.25 16 26 C -0.13 -3.40 6.22 31.67 0.20 -3.21 16 27 H 0.04 1.38 8.13 -2.39 -0.02 1.36 16 28 H 0.06 1.82 8.13 -2.39 -0.02 1.80 16 29 H 0.12 3.17 8.14 -2.38 -0.02 3.15 16 30 H 0.08 3.41 8.08 -2.39 -0.02 3.39 16 31 H 0.08 4.21 6.66 -2.39 -0.02 4.20 16 32 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 33 H 0.08 3.31 7.83 -2.38 -0.02 3.29 16 34 H 0.08 2.90 7.53 -2.39 -0.02 2.89 16 35 H 0.09 1.94 5.76 -2.38 -0.01 1.93 16 36 H 0.07 0.97 7.01 -2.38 -0.02 0.96 16 37 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.07 0.93 7.15 -2.39 -0.02 0.91 16 42 H 0.12 2.07 6.21 -2.39 -0.01 2.06 16 43 H 0.05 1.97 5.64 -2.39 -0.01 1.96 16 44 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 49 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 50 H 0.05 1.58 6.18 -2.39 -0.01 1.56 16 Total: -1.00 -74.02 391.22 6.67 -67.35 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: 0.91 Total: 19.62 kcal Atomic # 6 Polarization: 30.32 SS G_CDS: 6.69 Total: 37.01 kcal Atomic # 7 Polarization: -98.48 SS G_CDS: -2.74 Total: -101.22 kcal Atomic # 8 Polarization: -71.44 SS G_CDS: -0.23 Total: -71.67 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -74.02 6.67 -67.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356673185.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.197 kcal (2) G-P(sol) polarization free energy of solvation -74.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds