Wall clock time and date at job start Tue Mar 31 2020 15:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47015 * 2 1 4 4 H 1.09003 * 109.50899 * 305.09661 * 3 2 1 5 5 C 1.53296 * 109.51076 * 185.00142 * 3 2 1 6 6 N 1.47155 * 108.38389 * 187.77201 * 5 3 2 7 7 C 1.34779 * 120.98341 * 230.51018 * 6 5 3 8 8 O 1.21341 * 120.00087 * 181.63560 * 7 6 5 9 9 C 1.49457 * 119.99666 * 1.63809 * 7 6 5 10 10 O 1.21342 * 120.00186 * 353.55365 * 9 7 6 11 11 N 1.34773 * 119.99756 * 173.55271 * 9 7 6 12 12 C 1.46494 * 120.00247 * 179.97438 * 11 9 7 13 13 C 1.52998 * 109.47544 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.47434 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47447 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99615 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00178 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99786 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00073 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47112 * 59.99935 * 19 17 15 21 21 H 1.48501 * 109.47131 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46821 * 299.99916 * 19 17 15 23 23 C 1.47157 * 118.03564 * 50.78450 * 6 5 3 24 24 C 1.53713 * 108.15943 * 309.15728 * 23 6 5 25 25 H 1.09002 * 109.48347 * 172.39714 * 24 23 6 26 26 C 1.52999 * 109.66046 * 292.57195 * 24 23 6 27 27 C 1.52995 * 109.47210 * 184.74201 * 26 24 23 28 28 O 1.42952 * 109.51739 * 65.25314 * 3 2 1 29 29 H 1.08996 * 109.47080 * 300.00147 * 1 2 3 30 30 H 1.08998 * 109.46667 * 60.00448 * 1 2 3 31 31 H 1.09002 * 109.46524 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47080 * 239.99853 * 2 1 3 33 33 H 1.09000 * 109.46982 * 119.99985 * 2 1 3 34 34 H 1.09003 * 109.68415 * 68.04942 * 5 3 2 35 35 H 1.08997 * 109.71127 * 307.51210 * 5 3 2 36 36 H 0.97007 * 120.00242 * 0.02562 * 11 9 7 37 37 H 1.09001 * 109.46682 * 60.00183 * 12 11 9 38 38 H 1.08998 * 109.47121 * 300.00410 * 12 11 9 39 39 H 1.09001 * 109.47169 * 60.00252 * 13 12 11 40 40 H 1.08998 * 109.47059 * 300.00219 * 13 12 11 41 41 H 1.08998 * 109.46780 * 299.99905 * 14 13 12 42 42 H 1.09000 * 109.47623 * 59.99547 * 14 13 12 43 43 H 0.97006 * 119.99534 * 180.02562 * 18 17 15 44 44 H 1.09000 * 109.68053 * 68.93492 * 23 6 5 45 45 H 1.08996 * 109.68144 * 189.49397 * 23 6 5 46 46 H 1.09002 * 109.47056 * 304.74446 * 26 24 23 47 47 H 1.09003 * 109.46952 * 64.74050 * 26 24 23 48 48 H 1.09003 * 109.47287 * 60.00053 * 27 26 24 49 49 H 1.08998 * 109.47054 * 179.97438 * 27 26 24 50 50 H 1.09002 * 109.47311 * 300.00089 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6044 1.9826 -0.8406 5 6 3.5678 1.4454 -0.1260 6 7 4.0465 2.8239 0.0643 7 6 4.8920 3.3927 -0.8179 8 8 5.2989 4.5200 -0.6280 9 6 5.3282 2.6350 -2.0300 10 8 5.0168 1.4696 -2.1617 11 7 6.0675 3.2461 -2.9768 12 6 6.4956 2.5034 -4.1647 13 6 7.3154 3.4221 -5.0727 14 6 7.7620 2.6466 -6.3137 15 6 8.5690 3.5517 -7.2084 16 1 8.7461 4.5774 -6.9205 17 6 9.0822 3.0700 -8.3939 18 7 8.8670 1.8208 -8.7442 19 14 10.0832 4.1918 -9.5027 20 1 11.2773 4.6784 -8.7662 21 1 10.5165 3.4390 -10.7071 22 1 9.2507 5.3499 -9.9163 23 6 3.5798 3.5608 1.2495 24 6 2.0472 3.4566 1.3055 25 1 1.6882 3.8782 2.2444 26 6 1.4358 4.2262 0.1329 27 6 -0.0890 4.2195 0.2582 28 8 1.6675 2.0808 1.2236 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.8553 1.0903 -1.1156 35 1 4.0008 0.7979 0.6365 36 1 6.3167 4.1777 -2.8713 37 1 5.6191 2.1459 -4.7050 38 1 7.1069 1.6535 -3.8610 39 1 8.1920 3.7793 -4.5322 40 1 6.7045 4.2722 -5.3764 41 1 8.3728 1.7963 -6.0103 42 1 6.8854 2.2896 -6.8541 43 1 9.2284 1.4818 -9.5782 44 1 4.0134 3.1227 2.1484 45 1 3.8751 4.6070 1.1711 46 1 1.7970 5.2545 0.1454 47 1 1.7254 3.7507 -0.8042 48 1 -0.3787 4.6950 1.1954 49 1 -0.5245 4.7682 -0.5768 50 1 -0.4502 3.1912 0.2458 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000422303578.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:16 Heat of formation + Delta-G solvation = -121.381353 kcal Electronic energy + Delta-G solvation = -28597.227585 eV Core-core repulsion = 24624.539455 eV Total energy + Delta-G solvation = -3972.688130 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.30603 -39.75660 -38.39327 -36.07180 -35.04539 -34.85279 -33.37052 -32.83361 -31.31449 -30.02680 -28.42847 -27.14656 -25.14662 -24.45095 -23.56254 -22.58383 -21.86374 -20.89409 -20.16378 -19.61771 -17.83207 -17.44086 -16.94534 -16.46337 -16.39098 -15.99154 -15.44059 -15.31641 -15.10009 -14.83092 -14.47482 -14.37056 -14.12257 -13.99166 -13.83378 -13.51610 -13.29198 -12.84361 -12.69031 -12.33414 -12.30685 -12.08027 -11.92254 -11.86821 -11.62642 -11.38508 -11.33879 -11.22953 -11.13286 -10.92039 -10.81089 -10.78176 -10.63781 -10.27705 -9.95021 -9.62728 -9.24651 -9.15372 -9.05266 -8.84587 -8.40532 -6.05479 -4.08686 1.29909 2.13681 3.08229 3.28421 3.30533 3.35266 3.37453 3.41844 4.19602 4.29521 4.35231 4.42015 4.60716 4.62028 4.74110 4.82606 4.96321 5.04698 5.05963 5.21639 5.28883 5.30511 5.30535 5.35386 5.49080 5.51430 5.52440 5.62237 5.65161 5.67374 5.71033 5.79669 5.83853 5.93949 5.96038 6.01214 6.05657 6.33406 6.48116 6.66314 6.79084 6.88549 6.90981 7.20270 7.57711 7.61499 7.69182 7.92181 7.94938 8.33543 8.97509 9.55827 11.05738 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.020277 B = 0.002176 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.519928 B =12865.117604 C =13379.494510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C 0.074 3.926 4 H 0.067 0.933 5 C 0.025 3.975 6 N -0.583 5.583 7 C 0.509 3.491 8 O -0.521 6.521 9 C 0.504 3.496 10 O -0.516 6.516 11 N -0.686 5.686 12 C 0.112 3.888 13 C -0.123 4.123 14 C 0.025 3.975 15 C -0.524 4.524 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.894 3.106 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.077 3.923 24 C 0.081 3.919 25 H 0.114 0.886 26 C -0.156 4.156 27 C -0.147 4.147 28 O -0.368 6.368 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.165 0.835 35 H 0.074 0.926 36 H 0.412 0.588 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.262 0.738 44 H 0.080 0.920 45 H 0.103 0.897 46 H 0.073 0.927 47 H 0.068 0.932 48 H 0.054 0.946 49 H 0.054 0.946 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.494 0.422 22.186 28.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.151 4.151 3 C 0.016 3.984 4 H 0.085 0.915 5 C -0.096 4.096 6 N -0.317 5.317 7 C 0.292 3.708 8 O -0.397 6.397 9 C 0.285 3.715 10 O -0.396 6.396 11 N -0.336 5.336 12 C -0.010 4.010 13 C -0.161 4.161 14 C -0.012 4.012 15 C -0.562 4.562 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.533 5.533 19 Si 0.722 3.278 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.045 4.045 24 C 0.022 3.978 25 H 0.132 0.868 26 C -0.194 4.194 27 C -0.204 4.204 28 O -0.287 6.287 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.181 0.819 35 H 0.093 0.907 36 H 0.248 0.752 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.072 0.928 44 H 0.098 0.902 45 H 0.121 0.879 46 H 0.092 0.908 47 H 0.086 0.914 48 H 0.073 0.927 49 H 0.073 0.927 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.526 -0.015 22.162 28.254 hybrid contribution 0.877 1.158 -0.678 1.603 sum -16.650 1.143 21.484 27.204 Atomic orbital electron populations 1.21703 0.95062 1.01625 1.02164 1.21488 0.96793 0.93609 1.03258 1.22605 0.93417 0.94618 0.87746 0.91535 1.23979 0.94444 0.81475 1.09752 1.47928 1.44890 1.15660 1.23241 1.20230 0.79897 0.86433 0.84222 1.90751 1.54738 1.18348 1.75857 1.20028 0.80197 0.87086 0.84180 1.90319 1.55086 1.16564 1.77585 1.46121 1.50552 1.16369 1.20578 1.21896 0.99496 0.95755 0.83823 1.21935 0.98116 0.98430 0.97630 1.19022 0.96568 0.95400 0.90253 1.21154 1.33096 0.97472 1.04511 0.92629 1.25021 0.96382 0.95097 0.97904 1.69952 1.45508 1.14333 1.23500 0.86631 0.80553 0.80655 0.80003 1.20207 1.21256 1.20218 1.22552 0.94944 0.99296 0.87718 1.22681 0.92270 0.82946 0.99860 0.86842 1.22125 0.96942 1.01096 0.99244 1.21687 0.94793 1.02315 1.01587 1.87990 1.80038 1.22745 1.37910 0.92052 0.92912 0.92631 0.89956 0.90950 0.81909 0.90740 0.75179 0.90907 0.90897 0.92382 0.92418 0.96189 0.96192 0.92831 0.90166 0.87917 0.90788 0.91376 0.92663 0.92731 0.92097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.81 37.16 0.36 -0.70 16 2 C -0.11 -0.88 5.64 -26.73 -0.15 -1.03 16 3 C 0.07 0.67 2.39 -26.58 -0.06 0.61 16 4 H 0.07 0.65 6.15 -51.93 -0.32 0.33 16 5 C 0.02 0.25 5.67 -3.53 -0.02 0.23 16 6 N -0.58 -6.49 2.61 -172.52 -0.45 -6.94 16 7 C 0.51 6.77 7.78 -11.58 -0.09 6.68 16 8 O -0.52 -7.75 15.97 5.50 0.09 -7.66 16 9 C 0.50 7.21 7.81 -11.58 -0.09 7.11 16 10 O -0.52 -7.92 13.04 5.50 0.07 -7.85 16 11 N -0.69 -9.82 5.55 -60.74 -0.34 -10.16 16 12 C 0.11 1.83 5.67 -4.05 -0.02 1.81 16 13 C -0.12 -2.32 5.27 -26.73 -0.14 -2.46 16 14 C 0.03 0.62 4.97 -27.88 -0.14 0.48 16 15 C -0.52 -14.40 9.11 -34.44 -0.31 -14.71 16 16 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 19 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 C 0.08 0.70 6.05 -3.31 -0.02 0.68 16 24 C 0.08 0.64 3.31 -26.36 -0.09 0.55 16 25 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 26 C -0.16 -1.28 5.00 -26.73 -0.13 -1.41 16 27 C -0.15 -1.05 9.81 37.15 0.36 -0.68 16 28 O -0.37 -3.37 9.31 -35.23 -0.33 -3.70 16 29 H 0.06 0.47 7.83 -51.93 -0.41 0.06 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.16 1.96 3.96 -56.37 -0.22 1.74 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.41 5.44 7.96 -40.82 -0.32 5.12 16 37 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.10 0.96 7.09 -51.93 -0.37 0.59 16 46 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.07 0.67 5.97 -51.93 -0.31 0.36 16 48 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.06 0.47 7.82 -51.93 -0.41 0.06 16 LS Contribution 397.48 15.07 5.99 5.99 Total: -1.00 -30.55 397.48 -8.55 -39.11 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -8.66 Total: 1.90 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -0.64 Total: -1.31 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: -0.05 Total: -42.76 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.17 Total: -19.21 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.55 -8.55 -39.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422303578.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.271 kcal (2) G-P(sol) polarization free energy of solvation -30.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds