Wall clock time and date at job start Tue Mar 31 2020 15:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47015 * 2 1 4 4 H 1.09003 * 109.50899 * 305.09661 * 3 2 1 5 5 C 1.53296 * 109.51076 * 185.00142 * 3 2 1 6 6 N 1.47155 * 108.38389 * 187.77201 * 5 3 2 7 7 C 1.34779 * 120.98341 * 230.51018 * 6 5 3 8 8 O 1.21341 * 120.00087 * 181.63560 * 7 6 5 9 9 C 1.49457 * 119.99666 * 1.63809 * 7 6 5 10 10 O 1.21342 * 120.00186 * 353.55365 * 9 7 6 11 11 N 1.34773 * 119.99756 * 173.55271 * 9 7 6 12 12 C 1.46494 * 120.00247 * 179.97438 * 11 9 7 13 13 C 1.52998 * 109.47544 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.47434 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47447 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99615 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00178 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99786 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00073 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47112 * 59.99935 * 19 17 15 21 21 H 1.48501 * 109.47131 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46821 * 299.99916 * 19 17 15 23 23 C 1.47157 * 118.03564 * 50.78450 * 6 5 3 24 24 C 1.53713 * 108.15943 * 309.15728 * 23 6 5 25 25 H 1.09002 * 109.48347 * 172.39714 * 24 23 6 26 26 C 1.52999 * 109.66046 * 292.57195 * 24 23 6 27 27 C 1.52995 * 109.47210 * 184.74201 * 26 24 23 28 28 O 1.42952 * 109.51739 * 65.25314 * 3 2 1 29 29 H 1.08996 * 109.47080 * 300.00147 * 1 2 3 30 30 H 1.08998 * 109.46667 * 60.00448 * 1 2 3 31 31 H 1.09002 * 109.46524 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47080 * 239.99853 * 2 1 3 33 33 H 1.09000 * 109.46982 * 119.99985 * 2 1 3 34 34 H 1.09003 * 109.68415 * 68.04942 * 5 3 2 35 35 H 1.08997 * 109.71127 * 307.51210 * 5 3 2 36 36 H 0.97007 * 120.00242 * 0.02562 * 11 9 7 37 37 H 1.09001 * 109.46682 * 60.00183 * 12 11 9 38 38 H 1.08998 * 109.47121 * 300.00410 * 12 11 9 39 39 H 1.09001 * 109.47169 * 60.00252 * 13 12 11 40 40 H 1.08998 * 109.47059 * 300.00219 * 13 12 11 41 41 H 1.08998 * 109.46780 * 299.99905 * 14 13 12 42 42 H 1.09000 * 109.47623 * 59.99547 * 14 13 12 43 43 H 0.97006 * 119.99534 * 180.02562 * 18 17 15 44 44 H 1.09000 * 109.68053 * 68.93492 * 23 6 5 45 45 H 1.08996 * 109.68144 * 189.49397 * 23 6 5 46 46 H 1.09002 * 109.47056 * 304.74446 * 26 24 23 47 47 H 1.09003 * 109.46952 * 64.74050 * 26 24 23 48 48 H 1.09003 * 109.47287 * 60.00053 * 27 26 24 49 49 H 1.08998 * 109.47054 * 179.97438 * 27 26 24 50 50 H 1.09002 * 109.47311 * 300.00089 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6044 1.9826 -0.8406 5 6 3.5678 1.4454 -0.1260 6 7 4.0465 2.8239 0.0643 7 6 4.8920 3.3927 -0.8179 8 8 5.2989 4.5200 -0.6280 9 6 5.3282 2.6350 -2.0300 10 8 5.0168 1.4696 -2.1617 11 7 6.0675 3.2461 -2.9768 12 6 6.4956 2.5034 -4.1647 13 6 7.3154 3.4221 -5.0727 14 6 7.7620 2.6466 -6.3137 15 6 8.5690 3.5517 -7.2084 16 1 8.7461 4.5774 -6.9205 17 6 9.0822 3.0700 -8.3939 18 7 8.8670 1.8208 -8.7442 19 14 10.0832 4.1918 -9.5027 20 1 11.2773 4.6784 -8.7662 21 1 10.5165 3.4390 -10.7071 22 1 9.2507 5.3499 -9.9163 23 6 3.5798 3.5608 1.2495 24 6 2.0472 3.4566 1.3055 25 1 1.6882 3.8782 2.2444 26 6 1.4358 4.2262 0.1329 27 6 -0.0890 4.2195 0.2582 28 8 1.6675 2.0808 1.2236 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.8553 1.0903 -1.1156 35 1 4.0008 0.7979 0.6365 36 1 6.3167 4.1777 -2.8713 37 1 5.6191 2.1459 -4.7050 38 1 7.1069 1.6535 -3.8610 39 1 8.1920 3.7793 -4.5322 40 1 6.7045 4.2722 -5.3764 41 1 8.3728 1.7963 -6.0103 42 1 6.8854 2.2896 -6.8541 43 1 9.2284 1.4818 -9.5782 44 1 4.0134 3.1227 2.1484 45 1 3.8751 4.6070 1.1711 46 1 1.7970 5.2545 0.1454 47 1 1.7254 3.7507 -0.8042 48 1 -0.3787 4.6950 1.1954 49 1 -0.5245 4.7682 -0.5768 50 1 -0.4502 3.1912 0.2458 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422303578.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:15 Heat of formation + Delta-G solvation = -140.466409 kcal Electronic energy + Delta-G solvation = -28598.055175 eV Core-core repulsion = 24624.539455 eV Total energy + Delta-G solvation = -3973.515720 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.28557 -40.68395 -39.45438 -37.36775 -36.01069 -35.68036 -35.13312 -33.47243 -33.07430 -30.73266 -29.43443 -28.68298 -26.30404 -25.29600 -24.78113 -23.59659 -22.74368 -22.40514 -21.19891 -20.52429 -18.90640 -18.51812 -18.31885 -17.73637 -17.42723 -17.12724 -16.53187 -16.45527 -16.11932 -16.00652 -15.93816 -15.34532 -15.07180 -14.89189 -14.64435 -14.40992 -14.26885 -14.07036 -13.79948 -13.61234 -13.48535 -13.45743 -12.94897 -12.73952 -12.71003 -12.56821 -12.45586 -12.35591 -12.13026 -11.97966 -11.97051 -11.79840 -11.70609 -11.61509 -11.47741 -11.23198 -11.01534 -10.54375 -10.39994 -10.20539 -9.69881 -8.19676 -6.30469 0.19796 1.11588 1.42001 1.44267 1.52165 1.98050 2.27084 2.42502 2.70710 3.14307 3.14638 3.57162 3.64016 3.91846 3.95393 4.01704 4.06204 4.16566 4.17439 4.28851 4.35940 4.39823 4.50737 4.53727 4.61648 4.64379 4.67300 4.71354 4.86779 4.90829 4.91747 5.00513 5.06499 5.07018 5.12585 5.14564 5.19325 5.24975 5.34224 5.37208 5.46908 5.51457 5.70612 5.81208 5.84303 6.08304 6.18444 6.23422 6.56610 6.81801 6.86356 7.38883 8.91955 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.020277 B = 0.002176 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.519928 B =12865.117604 C =13379.494510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 C 0.080 3.920 4 H 0.059 0.941 5 C 0.025 3.975 6 N -0.577 5.577 7 C 0.511 3.489 8 O -0.540 6.540 9 C 0.504 3.496 10 O -0.529 6.529 11 N -0.682 5.682 12 C 0.127 3.873 13 C -0.107 4.107 14 C 0.026 3.974 15 C -0.543 4.543 16 H 0.063 0.937 17 C -0.001 4.001 18 N -0.933 5.933 19 Si 0.964 3.036 20 H -0.267 1.267 21 H -0.285 1.285 22 H -0.267 1.267 23 C 0.074 3.926 24 C 0.083 3.917 25 H 0.139 0.861 26 C -0.154 4.154 27 C -0.142 4.142 28 O -0.371 6.371 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.150 0.850 35 H 0.082 0.918 36 H 0.419 0.581 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.066 0.934 41 H -0.003 1.003 42 H -0.003 1.003 43 H 0.264 0.736 44 H 0.094 0.906 45 H 0.101 0.899 46 H 0.076 0.924 47 H 0.048 0.952 48 H 0.067 0.933 49 H 0.054 0.946 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.082 1.517 23.511 29.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.151 4.151 3 C 0.022 3.978 4 H 0.077 0.923 5 C -0.096 4.096 6 N -0.309 5.309 7 C 0.294 3.706 8 O -0.418 6.418 9 C 0.285 3.715 10 O -0.408 6.408 11 N -0.333 5.333 12 C 0.004 3.996 13 C -0.144 4.144 14 C -0.012 4.012 15 C -0.581 4.581 16 H 0.082 0.918 17 C -0.199 4.199 18 N -0.573 5.573 19 Si 0.788 3.212 20 H -0.192 1.192 21 H -0.211 1.211 22 H -0.192 1.192 23 C -0.047 4.047 24 C 0.025 3.975 25 H 0.156 0.844 26 C -0.192 4.192 27 C -0.199 4.199 28 O -0.290 6.290 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.166 0.834 35 H 0.100 0.900 36 H 0.256 0.744 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.015 0.985 42 H 0.016 0.984 43 H 0.072 0.928 44 H 0.112 0.888 45 H 0.119 0.881 46 H 0.094 0.906 47 H 0.066 0.934 48 H 0.086 0.914 49 H 0.073 0.927 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.138 1.085 23.522 29.723 hybrid contribution 1.009 0.773 -1.036 1.640 sum -17.129 1.859 22.486 28.328 Atomic orbital electron populations 1.21668 0.94470 1.02186 1.01855 1.21506 0.97269 0.92725 1.03568 1.22537 0.92251 0.95377 0.87646 0.92317 1.23938 0.95506 0.81091 1.09041 1.48027 1.43740 1.15977 1.23202 1.19958 0.80389 0.86121 0.84171 1.90743 1.55805 1.18929 1.76277 1.20276 0.79773 0.87002 0.84420 1.90351 1.55351 1.17119 1.77993 1.45928 1.50745 1.16583 1.20056 1.21518 0.98847 0.95040 0.84176 1.21643 0.98897 0.98190 0.95714 1.18920 0.95041 0.94999 0.92230 1.21649 1.33162 0.98195 1.05123 0.91848 1.25964 0.97638 0.96581 0.99674 1.70088 1.46804 1.16259 1.24129 0.85520 0.79114 0.78692 0.77840 1.19200 1.21065 1.19169 1.22770 0.95834 0.99066 0.87060 1.22820 0.91355 0.82477 1.00881 0.84354 1.22102 0.97723 1.00992 0.98403 1.21650 0.93906 1.02083 1.02309 1.87995 1.79957 1.23331 1.37704 0.92416 0.93122 0.91656 0.89759 0.90540 0.83390 0.90014 0.74371 0.91310 0.91478 0.91574 0.91491 0.98507 0.98423 0.92773 0.88835 0.88055 0.90579 0.93352 0.91364 0.92722 0.92688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.81 71.98 0.71 -1.18 16 2 C -0.11 -1.63 5.64 30.60 0.17 -1.45 16 3 C 0.08 1.38 2.39 30.69 0.07 1.45 16 4 H 0.06 1.12 6.15 -2.39 -0.01 1.10 16 5 C 0.03 0.50 5.67 86.35 0.49 0.99 16 6 N -0.58 -12.28 2.61 -818.09 -2.14 -14.41 16 7 C 0.51 13.28 7.78 87.27 0.68 13.95 16 8 O -0.54 -15.63 15.97 -3.22 -0.05 -15.68 16 9 C 0.50 14.24 7.81 87.27 0.68 14.92 16 10 O -0.53 -16.19 13.04 -3.22 -0.04 -16.23 16 11 N -0.68 -19.19 5.55 -464.43 -2.58 -21.77 16 12 C 0.13 4.14 5.67 86.38 0.49 4.63 16 13 C -0.11 -3.99 5.27 30.59 0.16 -3.83 16 14 C 0.03 1.30 4.97 29.85 0.15 1.45 16 15 C -0.54 -29.96 9.11 25.60 0.23 -29.72 16 16 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 17 C 0.00 -0.04 5.46 84.65 0.46 0.43 16 18 N -0.93 -56.02 13.29 21.45 0.28 -55.74 16 19 Si 0.96 43.52 29.54 68.60 2.03 45.55 16 20 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 21 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 22 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 23 C 0.07 1.22 6.05 86.49 0.52 1.74 16 24 C 0.08 1.15 3.31 30.83 0.10 1.25 16 25 H 0.14 1.28 8.14 -2.39 -0.02 1.26 16 26 C -0.15 -2.32 5.00 30.59 0.15 -2.17 16 27 C -0.14 -1.82 9.81 71.98 0.71 -1.11 16 28 O -0.37 -6.14 9.31 -148.98 -1.39 -7.52 16 29 H 0.06 0.80 7.83 -2.39 -0.02 0.78 16 30 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.15 3.53 3.96 -72.76 -0.29 3.24 16 35 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.42 10.71 7.96 -92.70 -0.74 9.97 16 37 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 41 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 42 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 43 H 0.26 14.94 8.31 -92.70 -0.77 14.17 16 44 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.10 1.73 7.09 -2.39 -0.02 1.72 16 46 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.05 0.92 5.97 -2.39 -0.01 0.91 16 48 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 49 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.05 0.77 7.82 -2.39 -0.02 0.75 16 Total: -1.00 -65.07 397.48 1.81 -63.27 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: -0.09 Total: 21.19 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: 5.78 Total: 1.35 kcal Atomic # 7 Polarization: -87.49 SS G_CDS: -4.43 Total: -91.92 kcal Atomic # 8 Polarization: -37.95 SS G_CDS: -1.48 Total: -39.43 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -65.07 1.81 -63.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422303578.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.200 kcal (2) G-P(sol) polarization free energy of solvation -65.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds