Wall clock time and date at job start Tue Mar 31 2020 15:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47152 * 2 1 4 4 H 1.09002 * 109.46807 * 54.99994 * 3 2 1 5 5 N 1.46505 * 109.47130 * 295.00060 * 3 2 1 6 6 C 1.34777 * 119.99724 * 85.00158 * 5 3 2 7 7 O 1.21343 * 120.00423 * 359.97438 * 6 5 3 8 8 C 1.49452 * 119.99621 * 180.02562 * 6 5 3 9 9 O 1.21343 * 119.99953 * 359.97438 * 8 6 5 10 10 N 1.34777 * 119.99622 * 179.97438 * 8 6 5 11 11 C 1.46499 * 119.99665 * 179.72283 * 10 8 6 12 12 C 1.53004 * 109.47198 * 180.27868 * 11 10 8 13 13 C 1.52998 * 109.46876 * 299.99984 * 12 11 10 14 14 C 1.53005 * 109.46795 * 60.00011 * 12 11 10 15 15 C 1.50700 * 109.47208 * 180.02562 * 12 11 10 16 16 H 1.08002 * 119.99770 * 359.97438 * 15 12 11 17 17 C 1.37876 * 119.99720 * 179.97438 * 15 12 11 18 18 N 1.31514 * 120.00513 * 0.02562 * 17 15 12 19 19 Si 1.86809 * 119.99651 * 179.97438 * 17 15 12 20 20 H 1.48493 * 109.47037 * 59.99882 * 19 17 15 21 21 H 1.48501 * 109.46667 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47133 * 299.99829 * 19 17 15 23 23 C 1.52998 * 109.47309 * 174.99986 * 3 2 1 24 24 H 1.08998 * 110.33425 * 302.25396 * 23 3 2 25 25 C 1.54483 * 110.37347 * 179.97438 * 23 3 2 26 26 C 1.54509 * 104.06194 * 217.18835 * 25 23 3 27 27 C 1.54481 * 104.06333 * 0.02562 * 26 25 23 28 28 O 1.44420 * 104.80350 * 23.97319 * 27 26 25 29 29 H 1.09000 * 109.46777 * 299.99691 * 1 2 3 30 30 H 1.08995 * 109.47032 * 60.00287 * 1 2 3 31 31 H 1.09004 * 109.46870 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47154 * 239.99920 * 2 1 3 33 33 H 1.09004 * 109.47042 * 120.00317 * 2 1 3 34 34 H 0.97000 * 119.99792 * 264.99726 * 5 3 2 35 35 H 0.97001 * 120.00485 * 0.02562 * 10 8 6 36 36 H 1.09009 * 109.47454 * 300.27637 * 11 10 8 37 37 H 1.08998 * 109.47492 * 60.27932 * 11 10 8 38 38 H 1.08996 * 109.47009 * 60.00253 * 13 12 11 39 39 H 1.09004 * 109.46783 * 179.97438 * 13 12 11 40 40 H 1.08998 * 109.47156 * 300.00070 * 13 12 11 41 41 H 1.09000 * 109.47011 * 60.00556 * 14 12 11 42 42 H 1.09004 * 109.46658 * 180.02562 * 14 12 11 43 43 H 1.08996 * 109.47069 * 299.99740 * 14 12 11 44 44 H 0.96999 * 120.00239 * 180.02562 * 18 17 15 45 45 H 1.08996 * 110.51050 * 335.83567 * 25 23 3 46 46 H 1.09000 * 110.50591 * 98.41118 * 25 23 3 47 47 H 1.09010 * 110.50672 * 118.64584 * 26 25 23 48 48 H 1.08994 * 110.51392 * 241.21772 * 26 25 23 49 49 H 1.09003 * 110.36985 * 142.80853 * 27 26 25 50 50 H 1.08997 * 110.36712 * 265.14188 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6524 2.0975 -1.2518 6 6 0.4351 2.6644 -1.3669 7 8 -0.3400 2.6319 -0.4339 8 6 0.0395 3.3321 -2.6441 9 8 0.8145 3.3641 -3.5773 10 7 -1.1780 3.8986 -2.7594 11 6 -1.5635 4.5583 -4.0093 12 6 -2.9806 5.1191 -3.8740 13 6 -3.9549 3.9771 -3.5786 14 6 -3.0206 6.1329 -2.7287 15 6 -3.3774 5.7973 -5.1599 16 1 -2.6876 5.8259 -5.9905 17 6 -4.6209 6.3813 -5.2761 18 7 -5.4607 6.3469 -4.2645 19 14 -5.1125 7.2226 -6.8699 20 1 -5.0728 6.2388 -7.9815 21 1 -6.4880 7.7667 -6.7385 22 1 -4.1673 8.3315 -7.1563 23 6 3.5648 1.4443 0.1257 24 1 3.8706 0.9247 1.0337 25 6 4.1026 2.8925 0.1272 26 6 5.4227 2.8036 -0.6707 27 6 5.5261 1.3123 -1.0604 28 8 4.1653 0.8292 -1.0350 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 2.2720 2.1232 -1.9978 35 1 -1.7973 3.8733 -2.0133 36 1 -0.8693 5.3721 -4.2198 37 1 -1.5349 3.8362 -4.8252 38 1 -3.6681 3.4862 -2.6486 39 1 -4.9644 4.3767 -3.4817 40 1 -3.9263 3.2549 -4.3944 41 1 -2.3265 6.9465 -2.9392 42 1 -4.0303 6.5321 -2.6320 43 1 -2.7338 5.6420 -1.7987 44 1 -6.3357 6.7575 -4.3464 45 1 3.4000 3.5613 -0.3701 46 1 4.2919 3.2285 1.1467 47 1 5.3728 3.4285 -1.5625 48 1 6.2667 3.0972 -0.0466 49 1 5.9467 1.2099 -2.0608 50 1 6.1342 0.7720 -0.3350 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000422419774.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:25 Heat of formation + Delta-G solvation = -130.467669 kcal Electronic energy + Delta-G solvation = -29118.737190 eV Core-core repulsion = 25145.655048 eV Total energy + Delta-G solvation = -3973.082142 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.80133 -39.71226 -38.34969 -36.45712 -35.81961 -33.37190 -32.54209 -32.21639 -30.87447 -30.09763 -26.62481 -25.81369 -25.71296 -25.21304 -23.41042 -22.79893 -21.34060 -20.80113 -20.17227 -18.99191 -18.25227 -17.09574 -16.47739 -16.38500 -15.91348 -15.78376 -15.59958 -14.91835 -14.80991 -14.55143 -14.38702 -14.07868 -13.67148 -13.38249 -13.25428 -12.92345 -12.86649 -12.62122 -12.29130 -12.21060 -12.10239 -11.69380 -11.57226 -11.38640 -11.31700 -11.16618 -11.11377 -10.91710 -10.87115 -10.85380 -10.73523 -10.38758 -10.19503 -10.17677 -9.64135 -9.51170 -9.21580 -9.13638 -8.80024 -8.57319 -8.35973 -6.01907 -4.12793 1.71034 2.61868 3.30164 3.34762 3.37892 3.43507 3.54951 3.98524 4.09536 4.31492 4.39989 4.54432 4.63982 4.81439 4.83723 4.89032 4.98605 5.07816 5.24606 5.24714 5.32772 5.39604 5.48013 5.51442 5.64014 5.71681 5.77797 5.90666 6.06607 6.13218 6.24745 6.25105 6.37539 6.46859 6.48379 6.65788 6.84843 6.86089 6.95447 7.01384 7.20441 7.34724 7.56070 7.68583 7.77568 8.00938 8.02418 8.14400 8.34811 8.44115 8.87270 9.53061 10.99456 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.022483 B = 0.002579 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.098176 B =10856.225980 C =11489.363657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.132 4.132 3 C 0.152 3.848 4 H 0.103 0.897 5 N -0.693 5.693 6 C 0.507 3.493 7 O -0.517 6.517 8 C 0.494 3.506 9 O -0.535 6.535 10 N -0.681 5.681 11 C 0.128 3.872 12 C 0.057 3.943 13 C -0.134 4.134 14 C -0.133 4.133 15 C -0.508 4.508 16 H 0.058 0.942 17 C 0.067 3.933 18 N -0.885 5.885 19 Si 0.894 3.106 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C 0.067 3.933 24 H 0.085 0.915 25 C -0.155 4.155 26 C -0.156 4.156 27 C 0.045 3.955 28 O -0.366 6.366 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.416 0.584 35 H 0.410 0.590 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.008 0.992 39 H 0.087 0.913 40 H 0.027 0.973 41 H 0.027 0.973 42 H 0.087 0.913 43 H 0.008 0.992 44 H 0.261 0.739 45 H 0.082 0.918 46 H 0.079 0.921 47 H 0.078 0.922 48 H 0.076 0.924 49 H 0.093 0.907 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.835 -10.081 11.487 24.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.170 4.170 3 C 0.047 3.953 4 H 0.121 0.879 5 N -0.348 5.348 6 C 0.288 3.712 7 O -0.393 6.393 8 C 0.273 3.727 9 O -0.413 6.413 10 N -0.333 5.333 11 C 0.006 3.994 12 C 0.056 3.944 13 C -0.191 4.191 14 C -0.191 4.191 15 C -0.547 4.547 16 H 0.076 0.924 17 C -0.134 4.134 18 N -0.523 5.523 19 Si 0.722 3.278 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C 0.009 3.991 24 H 0.102 0.898 25 C -0.193 4.193 26 C -0.194 4.194 27 C -0.032 4.032 28 O -0.284 6.284 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.253 0.747 35 H 0.248 0.752 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.027 0.973 39 H 0.105 0.895 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.105 0.895 43 H 0.027 0.973 44 H 0.071 0.929 45 H 0.100 0.900 46 H 0.098 0.902 47 H 0.097 0.903 48 H 0.095 0.905 49 H 0.111 0.889 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 18.502 -10.145 11.380 23.974 hybrid contribution -0.098 0.609 -0.712 0.942 sum 18.404 -9.535 10.668 23.312 Atomic orbital electron populations 1.21832 0.94608 1.00907 1.03142 1.21913 0.97084 0.95211 1.02790 1.21203 0.91783 0.94428 0.87903 0.87895 1.45705 1.16294 1.55704 1.17090 1.20424 0.82517 0.79390 0.88826 1.90754 1.50699 1.57864 1.39958 1.20014 0.83723 0.81067 0.87862 1.90725 1.51376 1.59211 1.39997 1.46211 1.14639 1.53461 1.18940 1.21930 0.98981 0.95551 0.82916 1.18366 0.87555 0.92688 0.95768 1.21856 1.03957 0.97084 0.96233 1.21856 1.03539 0.98583 0.95129 1.20922 1.00202 1.35549 0.98017 0.92413 1.24878 0.96312 0.95818 0.96433 1.69796 1.07740 1.44604 1.30156 0.86620 0.77503 0.79854 0.83795 1.20269 1.21318 1.20283 1.23366 0.92597 0.92956 0.90199 0.89753 1.23024 0.97496 0.97225 1.01561 1.22944 0.97832 0.97533 1.01071 1.23419 0.84460 0.92984 1.02336 1.89166 1.24247 1.69166 1.45864 0.92038 0.92461 0.93337 0.90954 0.91138 0.74661 0.75221 0.92088 0.92055 0.97261 0.89453 0.95352 0.95380 0.89457 0.97269 0.92882 0.89950 0.90245 0.90333 0.90520 0.88858 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.51 37.16 0.32 -1.41 16 2 C -0.13 -1.29 5.46 -26.73 -0.15 -1.44 16 3 C 0.15 1.50 2.11 -67.93 -0.14 1.35 16 4 H 0.10 1.05 7.58 -51.93 -0.39 0.65 16 5 N -0.69 -8.45 4.09 -54.24 -0.22 -8.67 16 6 C 0.51 7.67 6.46 -11.58 -0.07 7.59 16 7 O -0.52 -8.42 13.61 5.50 0.07 -8.34 16 8 C 0.49 8.75 7.89 -11.58 -0.09 8.66 16 9 O -0.53 -10.45 16.48 5.50 0.09 -10.36 16 10 N -0.68 -12.71 4.95 -60.73 -0.30 -13.01 16 11 C 0.13 2.70 4.50 -4.04 -0.02 2.69 16 12 C 0.06 1.33 0.50 -155.66 -0.08 1.25 16 13 C -0.13 -3.07 8.08 37.16 0.30 -2.77 16 14 C -0.13 -3.06 8.08 37.16 0.30 -2.76 16 15 C -0.51 -13.25 8.01 -34.44 -0.28 -13.53 16 16 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 17 C 0.07 1.76 5.15 -17.82 -0.09 1.67 16 18 N -0.88 -23.66 9.35 55.43 0.52 -23.14 16 19 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 C 0.07 0.53 3.02 -25.95 -0.08 0.46 16 24 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 25 C -0.16 -1.15 6.53 -25.16 -0.16 -1.32 16 26 C -0.16 -1.01 7.09 -25.16 -0.18 -1.19 16 27 C 0.04 0.30 7.63 37.93 0.29 0.59 16 28 O -0.37 -3.40 10.36 -35.23 -0.37 -3.77 16 29 H 0.06 0.74 7.85 -51.93 -0.41 0.33 16 30 H 0.06 0.80 5.64 -51.93 -0.29 0.51 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.77 7.99 -51.93 -0.41 0.35 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.42 5.15 7.54 -40.82 -0.31 4.84 16 35 H 0.41 7.52 5.63 -40.82 -0.23 7.29 16 36 H 0.06 1.32 8.14 -51.92 -0.42 0.90 16 37 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 39 H 0.09 2.21 6.07 -51.93 -0.32 1.89 16 40 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.09 2.20 6.07 -51.93 -0.32 1.89 16 43 H 0.01 0.17 6.86 -51.93 -0.36 -0.18 16 44 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 45 H 0.08 0.75 7.20 -51.93 -0.37 0.38 16 46 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 48 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 387.78 15.07 5.84 5.84 Total: -1.00 -28.22 387.78 -7.89 -36.11 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -8.38 Total: 9.85 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -0.13 Total: -0.15 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: 0.00 Total: -44.83 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.20 Total: -22.47 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -28.22 -7.89 -36.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422419774.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.355 kcal (2) G-P(sol) polarization free energy of solvation -28.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds