Wall clock time and date at job start Tue Mar 31 2020 15:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47152 * 2 1 4 4 H 1.09002 * 109.46807 * 54.99994 * 3 2 1 5 5 N 1.46505 * 109.47130 * 295.00060 * 3 2 1 6 6 C 1.34777 * 119.99724 * 85.00158 * 5 3 2 7 7 O 1.21343 * 120.00423 * 359.97438 * 6 5 3 8 8 C 1.49452 * 119.99621 * 180.02562 * 6 5 3 9 9 O 1.21343 * 119.99953 * 359.97438 * 8 6 5 10 10 N 1.34777 * 119.99622 * 179.97438 * 8 6 5 11 11 C 1.46499 * 119.99665 * 179.72283 * 10 8 6 12 12 C 1.53004 * 109.47198 * 180.27868 * 11 10 8 13 13 C 1.52998 * 109.46876 * 299.99984 * 12 11 10 14 14 C 1.53005 * 109.46795 * 60.00011 * 12 11 10 15 15 C 1.50700 * 109.47208 * 180.02562 * 12 11 10 16 16 H 1.08002 * 119.99770 * 359.97438 * 15 12 11 17 17 C 1.37876 * 119.99720 * 179.97438 * 15 12 11 18 18 N 1.31514 * 120.00513 * 0.02562 * 17 15 12 19 19 Si 1.86809 * 119.99651 * 179.97438 * 17 15 12 20 20 H 1.48493 * 109.47037 * 59.99882 * 19 17 15 21 21 H 1.48501 * 109.46667 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47133 * 299.99829 * 19 17 15 23 23 C 1.52998 * 109.47309 * 174.99986 * 3 2 1 24 24 H 1.08998 * 110.33425 * 302.25396 * 23 3 2 25 25 C 1.54483 * 110.37347 * 179.97438 * 23 3 2 26 26 C 1.54509 * 104.06194 * 217.18835 * 25 23 3 27 27 C 1.54481 * 104.06333 * 0.02562 * 26 25 23 28 28 O 1.44420 * 104.80350 * 23.97319 * 27 26 25 29 29 H 1.09000 * 109.46777 * 299.99691 * 1 2 3 30 30 H 1.08995 * 109.47032 * 60.00287 * 1 2 3 31 31 H 1.09004 * 109.46870 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47154 * 239.99920 * 2 1 3 33 33 H 1.09004 * 109.47042 * 120.00317 * 2 1 3 34 34 H 0.97000 * 119.99792 * 264.99726 * 5 3 2 35 35 H 0.97001 * 120.00485 * 0.02562 * 10 8 6 36 36 H 1.09009 * 109.47454 * 300.27637 * 11 10 8 37 37 H 1.08998 * 109.47492 * 60.27932 * 11 10 8 38 38 H 1.08996 * 109.47009 * 60.00253 * 13 12 11 39 39 H 1.09004 * 109.46783 * 179.97438 * 13 12 11 40 40 H 1.08998 * 109.47156 * 300.00070 * 13 12 11 41 41 H 1.09000 * 109.47011 * 60.00556 * 14 12 11 42 42 H 1.09004 * 109.46658 * 180.02562 * 14 12 11 43 43 H 1.08996 * 109.47069 * 299.99740 * 14 12 11 44 44 H 0.96999 * 120.00239 * 180.02562 * 18 17 15 45 45 H 1.08996 * 110.51050 * 335.83567 * 25 23 3 46 46 H 1.09000 * 110.50591 * 98.41118 * 25 23 3 47 47 H 1.09010 * 110.50672 * 118.64584 * 26 25 23 48 48 H 1.08994 * 110.51392 * 241.21772 * 26 25 23 49 49 H 1.09003 * 110.36985 * 142.80853 * 27 26 25 50 50 H 1.08997 * 110.36712 * 265.14188 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6524 2.0975 -1.2518 6 6 0.4351 2.6644 -1.3669 7 8 -0.3400 2.6319 -0.4339 8 6 0.0395 3.3321 -2.6441 9 8 0.8145 3.3641 -3.5773 10 7 -1.1780 3.8986 -2.7594 11 6 -1.5635 4.5583 -4.0093 12 6 -2.9806 5.1191 -3.8740 13 6 -3.9549 3.9771 -3.5786 14 6 -3.0206 6.1329 -2.7287 15 6 -3.3774 5.7973 -5.1599 16 1 -2.6876 5.8259 -5.9905 17 6 -4.6209 6.3813 -5.2761 18 7 -5.4607 6.3469 -4.2645 19 14 -5.1125 7.2226 -6.8699 20 1 -5.0728 6.2388 -7.9815 21 1 -6.4880 7.7667 -6.7385 22 1 -4.1673 8.3315 -7.1563 23 6 3.5648 1.4443 0.1257 24 1 3.8706 0.9247 1.0337 25 6 4.1026 2.8925 0.1272 26 6 5.4227 2.8036 -0.6707 27 6 5.5261 1.3123 -1.0604 28 8 4.1653 0.8292 -1.0350 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 2.2720 2.1232 -1.9978 35 1 -1.7973 3.8733 -2.0133 36 1 -0.8693 5.3721 -4.2198 37 1 -1.5349 3.8362 -4.8252 38 1 -3.6681 3.4862 -2.6486 39 1 -4.9644 4.3767 -3.4817 40 1 -3.9263 3.2549 -4.3944 41 1 -2.3265 6.9465 -2.9392 42 1 -4.0303 6.5321 -2.6320 43 1 -2.7338 5.6420 -1.7987 44 1 -6.3357 6.7575 -4.3464 45 1 3.4000 3.5613 -0.3701 46 1 4.2919 3.2285 1.1467 47 1 5.3728 3.4285 -1.5625 48 1 6.2667 3.0972 -0.0466 49 1 5.9467 1.2099 -2.0608 50 1 6.1342 0.7720 -0.3350 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422419774.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:25 Heat of formation + Delta-G solvation = -148.232236 kcal Electronic energy + Delta-G solvation = -29119.507520 eV Core-core repulsion = 25145.655048 eV Total energy + Delta-G solvation = -3973.852472 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.92755 -40.65017 -39.59744 -38.19446 -36.80461 -35.06635 -33.40322 -32.95740 -32.74347 -30.80091 -28.03593 -27.59550 -27.28131 -26.68207 -24.77664 -23.43139 -21.96490 -21.80551 -21.33806 -20.71623 -19.66623 -18.16737 -17.82551 -17.36925 -17.15968 -16.89617 -16.65623 -16.58096 -16.01216 -15.81743 -15.57721 -15.05586 -14.76238 -14.69530 -14.59352 -14.21884 -14.04337 -13.99644 -13.64010 -13.21650 -13.13385 -13.04049 -12.74272 -12.68967 -12.64860 -12.62569 -12.40416 -12.27955 -12.14973 -12.12151 -11.83417 -11.72364 -11.51457 -11.48343 -11.30377 -10.78800 -10.74667 -10.58151 -10.41132 -10.19552 -10.10785 -8.01843 -6.18595 0.38394 1.37638 1.45768 1.47105 1.53713 2.17715 2.45237 2.70668 2.91638 3.21904 3.41781 3.50505 3.73563 4.01963 4.07369 4.09561 4.20488 4.34061 4.35570 4.43440 4.45990 4.57500 4.64057 4.66959 4.76569 4.86149 4.91646 4.93601 5.00743 5.02283 5.03051 5.05503 5.10967 5.16246 5.17636 5.17982 5.21809 5.32949 5.46389 5.47481 5.64072 5.66763 5.87131 6.00414 6.10531 6.18300 6.40171 6.42052 6.77038 6.86124 6.99348 7.49420 8.97288 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.022483 B = 0.002579 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.098176 B =10856.225980 C =11489.363657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.126 4.126 3 C 0.147 3.853 4 H 0.104 0.896 5 N -0.678 5.678 6 C 0.514 3.486 7 O -0.529 6.529 8 C 0.494 3.506 9 O -0.554 6.554 10 N -0.681 5.681 11 C 0.143 3.857 12 C 0.052 3.948 13 C -0.124 4.124 14 C -0.123 4.123 15 C -0.529 4.529 16 H 0.051 0.949 17 C 0.027 3.973 18 N -0.901 5.901 19 Si 0.948 3.052 20 H -0.276 1.276 21 H -0.285 1.285 22 H -0.275 1.275 23 C 0.072 3.928 24 H 0.111 0.889 25 C -0.156 4.156 26 C -0.153 4.153 27 C 0.041 3.959 28 O -0.388 6.388 29 H 0.055 0.945 30 H 0.029 0.971 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.416 0.584 35 H 0.413 0.587 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.029 0.971 39 H 0.064 0.936 40 H 0.022 0.978 41 H 0.023 0.977 42 H 0.064 0.936 43 H 0.030 0.970 44 H 0.260 0.740 45 H 0.060 0.940 46 H 0.096 0.904 47 H 0.067 0.933 48 H 0.095 0.905 49 H 0.095 0.905 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.544 -10.897 12.677 26.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.164 4.164 3 C 0.044 3.956 4 H 0.122 0.878 5 N -0.331 5.331 6 C 0.295 3.705 7 O -0.406 6.406 8 C 0.275 3.725 9 O -0.433 6.433 10 N -0.333 5.333 11 C 0.020 3.980 12 C 0.052 3.948 13 C -0.182 4.182 14 C -0.181 4.181 15 C -0.567 4.567 16 H 0.069 0.931 17 C -0.173 4.173 18 N -0.539 5.539 19 Si 0.775 3.225 20 H -0.201 1.201 21 H -0.210 1.210 22 H -0.201 1.201 23 C 0.014 3.986 24 H 0.128 0.872 25 C -0.194 4.194 26 C -0.191 4.191 27 C -0.035 4.035 28 O -0.308 6.308 29 H 0.074 0.926 30 H 0.048 0.952 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.116 0.884 34 H 0.253 0.747 35 H 0.251 0.749 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.048 0.952 39 H 0.083 0.917 40 H 0.041 0.959 41 H 0.042 0.958 42 H 0.083 0.917 43 H 0.049 0.951 44 H 0.070 0.930 45 H 0.079 0.921 46 H 0.115 0.885 47 H 0.086 0.914 48 H 0.114 0.886 49 H 0.114 0.886 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 20.243 -10.978 12.585 26.242 hybrid contribution -0.572 0.822 -1.068 1.464 sum 19.671 -10.155 11.516 24.954 Atomic orbital electron populations 1.21797 0.96064 1.01002 1.01463 1.21884 0.95612 0.95155 1.03733 1.21448 0.93548 0.94213 0.86419 0.87835 1.45712 1.14935 1.54443 1.18029 1.19858 0.83419 0.79779 0.87478 1.90754 1.51264 1.58748 1.39871 1.20491 0.82954 0.80391 0.88711 1.90711 1.51780 1.59779 1.41044 1.46053 1.15301 1.53773 1.18149 1.21538 0.97541 0.95124 0.83778 1.18358 0.88750 0.92799 0.94938 1.21709 1.02562 0.96829 0.97074 1.21703 1.01962 0.98437 0.96019 1.21227 1.00402 1.36108 0.98999 0.93099 1.25491 0.96394 0.96424 0.98943 1.69915 1.07784 1.44926 1.31320 0.85773 0.77142 0.78904 0.80726 1.20131 1.21028 1.20074 1.23419 0.90821 0.93550 0.90838 0.87182 1.23032 0.97415 0.96498 1.02481 1.22939 0.98038 0.97292 1.00851 1.23574 0.83587 0.93187 1.03166 1.89143 1.25572 1.69557 1.46514 0.92579 0.95167 0.92404 0.91657 0.88442 0.74665 0.74886 0.92838 0.92970 0.95167 0.91720 0.95875 0.95787 0.91748 0.95133 0.93003 0.92103 0.88512 0.91403 0.88646 0.88646 0.90463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 8.51 71.98 0.61 -2.63 16 2 C -0.13 -2.21 5.46 30.59 0.17 -2.04 16 3 C 0.15 2.64 2.11 44.99 0.09 2.74 16 4 H 0.10 1.91 7.58 -2.39 -0.02 1.89 16 5 N -0.68 -15.97 4.09 -443.87 -1.82 -17.79 16 6 C 0.51 15.29 6.46 87.27 0.56 15.85 16 7 O -0.53 -16.87 13.61 -3.22 -0.04 -16.92 16 8 C 0.49 17.41 7.89 87.27 0.69 18.10 16 9 O -0.55 -21.65 16.48 -3.23 -0.05 -21.70 16 10 N -0.68 -25.26 4.95 -464.40 -2.30 -27.56 16 11 C 0.14 6.07 4.50 86.38 0.39 6.46 16 12 C 0.05 2.45 0.50 -52.93 -0.03 2.42 16 13 C -0.12 -5.72 8.08 71.98 0.58 -5.14 16 14 C -0.12 -5.66 8.08 71.98 0.58 -5.08 16 15 C -0.53 -27.81 8.01 25.60 0.21 -27.61 16 16 H 0.05 2.68 7.74 -2.91 -0.02 2.66 16 17 C 0.03 1.44 5.15 84.65 0.44 1.87 16 18 N -0.90 -48.58 9.35 21.45 0.20 -48.38 16 19 Si 0.95 42.47 29.54 68.60 2.03 44.50 16 20 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 22 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 23 C 0.07 0.96 3.02 31.10 0.09 1.05 16 24 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 25 C -0.16 -2.00 6.53 31.61 0.21 -1.79 16 26 C -0.15 -1.67 7.09 31.61 0.22 -1.44 16 27 C 0.04 0.46 7.63 72.49 0.55 1.02 16 28 O -0.39 -6.43 10.36 -148.98 -1.54 -7.97 16 29 H 0.06 1.29 7.85 -2.39 -0.02 1.27 16 30 H 0.03 0.82 5.64 -2.39 -0.01 0.81 16 31 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.06 1.27 7.99 -2.39 -0.02 1.25 16 33 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 34 H 0.42 10.04 7.54 -92.71 -0.70 9.34 16 35 H 0.41 14.88 5.63 -92.71 -0.52 14.36 16 36 H 0.05 2.33 8.14 -2.38 -0.02 2.31 16 37 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.03 1.22 6.86 -2.39 -0.02 1.20 16 39 H 0.06 3.30 6.07 -2.38 -0.01 3.28 16 40 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.06 3.27 6.07 -2.38 -0.01 3.25 16 43 H 0.03 1.22 6.86 -2.39 -0.02 1.21 16 44 H 0.26 13.56 8.31 -92.71 -0.77 12.79 16 45 H 0.06 1.05 7.20 -2.39 -0.02 1.03 16 46 H 0.10 0.89 8.14 -2.39 -0.02 0.88 16 47 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 48 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 49 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 50 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 Total: -1.00 -60.17 387.78 1.57 -58.60 By element: Atomic # 1 Polarization: 33.69 SS G_CDS: -0.27 Total: 33.41 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: 5.37 Total: 3.80 kcal Atomic # 7 Polarization: -89.81 SS G_CDS: -3.92 Total: -93.72 kcal Atomic # 8 Polarization: -44.95 SS G_CDS: -1.64 Total: -46.59 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -60.17 1.57 -58.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422419774.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.633 kcal (2) G-P(sol) polarization free energy of solvation -60.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds