Wall clock time and date at job start Tue Mar 31 2020 15:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.46882 * 2 1 4 4 H 1.08994 * 109.51489 * 54.90469 * 3 2 1 5 5 C 1.53304 * 109.51039 * 175.00215 * 3 2 1 6 6 N 1.47148 * 108.38332 * 172.27642 * 5 3 2 7 7 C 1.34778 * 120.97966 * 129.44272 * 6 5 3 8 8 O 1.21351 * 119.99881 * 1.44652 * 7 6 5 9 9 C 1.49446 * 120.00238 * 181.44328 * 7 6 5 10 10 O 1.21351 * 119.99966 * 353.53710 * 9 7 6 11 11 N 1.34774 * 120.00134 * 173.53860 * 9 7 6 12 12 C 1.46502 * 120.00049 * 180.02562 * 11 9 7 13 13 C 1.52992 * 109.47319 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47592 * 59.99631 * 13 12 11 15 15 C 1.53004 * 109.47151 * 299.99673 * 13 12 11 16 16 C 1.50698 * 109.47512 * 180.02562 * 13 12 11 17 17 H 1.08011 * 119.99865 * 359.71728 * 16 13 12 18 18 C 1.37875 * 120.00575 * 179.97438 * 16 13 12 19 19 N 1.31514 * 119.99467 * 0.02562 * 18 16 13 20 20 Si 1.86796 * 120.00376 * 179.97438 * 18 16 13 21 21 H 1.48512 * 109.46764 * 60.00295 * 20 18 16 22 22 H 1.48503 * 109.47288 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47284 * 300.00651 * 20 18 16 24 24 C 1.47142 * 118.03810 * 309.71663 * 6 5 3 25 25 C 1.52879 * 108.61120 * 50.22865 * 24 6 5 26 26 H 1.09000 * 109.36852 * 67.81292 * 25 24 6 27 27 C 1.52995 * 109.58716 * 187.92398 * 25 24 6 28 28 O 1.42963 * 109.55753 * 294.77446 * 3 2 1 29 29 H 1.08996 * 109.47349 * 59.99543 * 1 2 3 30 30 H 1.08999 * 109.47436 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46696 * 299.99738 * 1 2 3 32 32 H 1.08999 * 109.46385 * 240.00260 * 2 1 3 33 33 H 1.08996 * 109.46889 * 120.00187 * 2 1 3 34 34 H 1.09004 * 109.67669 * 52.55236 * 5 3 2 35 35 H 1.08998 * 109.70888 * 292.02397 * 5 3 2 36 36 H 0.96996 * 120.00116 * 359.97438 * 11 9 7 37 37 H 1.09001 * 109.47045 * 59.99403 * 12 11 9 38 38 H 1.09007 * 109.46985 * 299.99681 * 12 11 9 39 39 H 1.08996 * 109.47716 * 180.02562 * 14 13 12 40 40 H 1.09003 * 109.47133 * 300.00497 * 14 13 12 41 41 H 1.09004 * 109.47072 * 59.99674 * 14 13 12 42 42 H 1.09001 * 109.47021 * 300.00362 * 15 13 12 43 43 H 1.09004 * 109.47197 * 59.99764 * 15 13 12 44 44 H 1.09000 * 109.47687 * 180.02562 * 15 13 12 45 45 H 0.97003 * 119.99848 * 180.02562 * 19 18 16 46 46 H 1.09007 * 109.68206 * 170.01036 * 24 6 5 47 47 H 1.08997 * 109.68280 * 290.56228 * 24 6 5 48 48 H 1.08998 * 109.47432 * 179.88001 * 27 25 24 49 49 H 1.09004 * 109.47017 * 299.87886 * 27 25 24 50 50 H 1.08996 * 109.47052 * 59.88132 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6044 1.9826 0.8406 5 6 3.5678 1.4454 0.1259 6 7 4.0464 2.8240 -0.0632 7 6 4.8911 3.3924 0.8199 8 8 5.2888 2.7572 1.7743 9 6 5.3380 4.8049 0.6238 10 8 5.0362 5.4018 -0.3888 11 7 6.0762 5.4159 1.5714 12 6 6.5139 6.8008 1.3794 13 6 7.3292 7.2510 2.5931 14 6 8.5532 6.3464 2.7494 15 6 6.4636 7.1596 3.8514 16 6 7.7789 8.6758 2.3959 17 1 7.5138 9.2056 1.4928 18 6 8.5331 9.3013 3.3658 19 7 8.8606 8.6543 4.4630 20 14 9.0910 11.0671 3.1210 21 1 7.9029 11.9450 2.9688 22 1 9.8824 11.5041 4.2992 23 1 9.9317 11.1559 1.9000 24 6 3.5707 3.5657 -1.2416 25 6 2.0470 3.4577 -1.3038 26 1 1.6114 4.0052 -0.4679 27 6 1.5442 4.0502 -2.6217 28 8 1.6672 2.0818 -1.2232 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 4.0003 0.7986 -0.6376 35 1 3.8559 1.0891 1.1149 36 1 6.3172 4.9390 2.3810 37 1 5.6418 7.4454 1.2685 38 1 7.1302 6.8661 0.4827 39 1 9.1339 6.6669 3.6144 40 1 8.2276 5.3160 2.8923 41 1 9.1699 6.4115 1.8529 42 1 5.5916 7.8041 3.7401 43 1 6.1379 6.1293 3.9944 44 1 7.0443 7.4808 4.7161 45 1 9.3909 9.0945 5.1456 46 1 3.8603 4.6133 -1.1575 47 1 4.0035 3.1362 -2.1451 48 1 0.4580 3.9704 -2.6650 49 1 1.8341 5.0993 -2.6824 50 1 1.9823 3.5033 -3.4565 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000422483201.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:24 Heat of formation + Delta-G solvation = -110.290707 kcal Electronic energy + Delta-G solvation = -29128.579032 eV Core-core repulsion = 25156.371828 eV Total energy + Delta-G solvation = -3972.207204 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.00673 -39.42530 -38.18707 -36.68063 -35.13770 -34.72293 -33.36124 -31.69695 -30.95673 -29.09939 -26.80365 -26.18957 -25.76771 -25.34468 -24.48942 -22.53477 -21.77383 -21.07393 -19.97818 -18.87379 -17.78177 -17.11444 -16.84968 -16.12012 -16.04894 -15.67599 -15.38461 -14.96074 -14.81148 -14.62885 -14.37035 -14.11040 -13.76005 -13.51624 -13.22226 -12.99538 -12.85447 -12.76547 -12.46074 -12.34121 -12.23719 -12.09045 -11.57370 -11.45130 -11.31377 -11.26022 -11.21638 -11.10374 -10.90312 -10.80705 -10.73379 -10.44344 -10.30536 -10.23077 -9.70234 -9.47257 -9.00615 -8.84750 -8.77861 -8.67498 -8.40912 -6.05968 -4.17126 1.53210 2.34568 3.27310 3.31407 3.32306 3.34462 3.36579 3.62077 4.30445 4.35791 4.57821 4.61471 4.69472 4.73752 4.89060 4.98777 5.05433 5.12807 5.20668 5.28456 5.40297 5.44359 5.56063 5.59656 5.64115 5.65068 5.83319 5.85286 5.95393 6.01608 6.03781 6.10051 6.16612 6.41311 6.62745 6.80127 6.80306 6.88061 6.95364 6.95490 7.00394 7.28282 7.50358 7.50568 7.65328 7.86986 7.95770 8.07371 8.24257 8.34843 8.82757 9.48958 10.95432 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.025036 B = 0.002537 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.140607 B =11032.435468 C =11647.852021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C 0.080 3.920 4 H 0.063 0.937 5 C 0.078 3.922 6 N -0.588 5.588 7 C 0.509 3.491 8 O -0.521 6.521 9 C 0.500 3.500 10 O -0.525 6.525 11 N -0.674 5.674 12 C 0.126 3.874 13 C 0.056 3.944 14 C -0.134 4.134 15 C -0.134 4.134 16 C -0.509 4.509 17 H 0.058 0.942 18 C 0.067 3.933 19 N -0.884 5.884 20 Si 0.895 3.105 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.025 3.975 25 C 0.075 3.925 26 H 0.060 0.940 27 C -0.140 4.140 28 O -0.375 6.375 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.102 0.898 36 H 0.412 0.588 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.087 0.913 40 H 0.008 0.992 41 H 0.028 0.972 42 H 0.028 0.972 43 H 0.008 0.992 44 H 0.088 0.912 45 H 0.261 0.739 46 H 0.167 0.833 47 H 0.073 0.927 48 H 0.065 0.935 49 H 0.078 0.922 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.980 -14.371 -9.195 22.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C 0.022 3.978 4 H 0.081 0.919 5 C -0.045 4.045 6 N -0.322 5.322 7 C 0.292 3.708 8 O -0.396 6.396 9 C 0.281 3.719 10 O -0.406 6.406 11 N -0.324 5.324 12 C 0.005 3.995 13 C 0.056 3.944 14 C -0.192 4.192 15 C -0.192 4.192 16 C -0.547 4.547 17 H 0.076 0.924 18 C -0.135 4.135 19 N -0.522 5.522 20 Si 0.723 3.277 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.096 4.096 25 C 0.017 3.983 26 H 0.078 0.922 27 C -0.198 4.198 28 O -0.295 6.295 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.120 0.880 36 H 0.250 0.750 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.106 0.894 40 H 0.027 0.973 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.027 0.973 44 H 0.106 0.894 45 H 0.072 0.928 46 H 0.183 0.817 47 H 0.091 0.909 48 H 0.084 0.916 49 H 0.096 0.904 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.914 -14.322 -9.322 22.036 hybrid contribution 0.579 0.716 0.418 1.011 sum -13.335 -13.605 -8.903 21.029 Atomic orbital electron populations 1.21695 0.94873 1.01609 1.02393 1.21501 0.97045 0.93548 1.03062 1.22487 0.92742 0.94841 0.87751 0.91936 1.22443 0.94770 0.82936 1.04347 1.47967 1.45152 1.14276 1.24854 1.20388 0.79720 0.88169 0.82509 1.90748 1.55035 1.64121 1.29735 1.19948 0.80659 0.86754 0.84573 1.90281 1.56103 1.66249 1.27933 1.46273 1.49311 1.16160 1.20683 1.22004 0.98664 0.77583 1.01287 1.18376 0.91356 0.95423 0.89274 1.21867 0.99817 0.94967 1.02562 1.21867 0.98844 0.96106 1.02361 1.20895 1.33350 0.96267 1.04199 0.92376 1.24884 0.95587 0.97950 0.95055 1.69796 1.37907 1.36562 1.07970 0.86609 0.78767 0.84755 0.77569 1.20255 1.21308 1.20260 1.23901 0.94236 1.04334 0.87086 1.22447 0.93895 0.82666 0.99330 0.92153 1.21692 1.01805 1.00969 0.95319 1.87930 1.80028 1.23959 1.37562 0.91862 0.92620 0.92883 0.90804 0.90258 0.90330 0.87985 0.75033 0.91791 0.91780 0.89393 0.97278 0.95296 0.95307 0.97346 0.89369 0.92839 0.81726 0.90877 0.91643 0.90363 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.81 37.16 0.36 -0.70 16 2 C -0.11 -0.86 5.65 -26.73 -0.15 -1.01 16 3 C 0.08 0.79 2.77 -26.58 -0.07 0.72 16 4 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 5 C 0.08 0.85 5.93 -3.53 -0.02 0.83 16 6 N -0.59 -7.85 3.03 -173.04 -0.52 -8.37 16 7 C 0.51 8.08 7.77 -11.59 -0.09 7.98 16 8 O -0.52 -9.14 15.97 5.50 0.09 -9.05 16 9 C 0.50 8.54 7.81 -11.59 -0.09 8.45 16 10 O -0.53 -9.26 13.04 5.50 0.07 -9.19 16 11 N -0.67 -12.16 4.95 -60.73 -0.30 -12.46 16 12 C 0.13 2.54 4.50 -4.04 -0.02 2.53 16 13 C 0.06 1.28 0.50 -155.67 -0.08 1.20 16 14 C -0.13 -3.03 8.08 37.16 0.30 -2.73 16 15 C -0.13 -3.00 8.08 37.16 0.30 -2.70 16 16 C -0.51 -12.93 8.01 -34.44 -0.28 -13.21 16 17 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 18 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 19 N -0.88 -23.30 9.35 55.43 0.52 -22.78 16 20 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 C 0.03 0.31 5.64 -3.75 -0.02 0.29 16 25 C 0.07 0.79 3.39 -26.80 -0.09 0.70 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 C -0.14 -1.19 9.57 37.15 0.36 -0.84 16 28 O -0.38 -4.08 9.58 -35.23 -0.34 -4.42 16 29 H 0.06 0.51 7.83 -51.93 -0.41 0.10 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.10 1.15 7.09 -51.93 -0.37 0.78 16 36 H 0.41 7.40 5.65 -40.82 -0.23 7.17 16 37 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.09 2.19 6.07 -51.93 -0.32 1.88 16 40 H 0.01 0.17 6.86 -51.93 -0.36 -0.19 16 41 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.01 0.16 6.86 -51.93 -0.36 -0.20 16 44 H 0.09 2.19 6.07 -51.93 -0.32 1.87 16 45 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 46 H 0.17 2.28 3.98 -56.31 -0.22 2.05 16 47 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 48 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 388.02 15.07 5.85 5.85 Total: -1.00 -27.27 388.02 -7.79 -35.06 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -8.45 Total: 6.90 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: 0.32 Total: 3.15 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: -0.31 Total: -43.61 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.18 Total: -22.66 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -27.27 -7.79 -35.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422483201.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.226 kcal (2) G-P(sol) polarization free energy of solvation -27.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds