Wall clock time and date at job start Tue Mar 31 2020 15:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.46882 * 2 1 4 4 H 1.08994 * 109.51489 * 54.90469 * 3 2 1 5 5 C 1.53304 * 109.51039 * 175.00215 * 3 2 1 6 6 N 1.47148 * 108.38332 * 172.27642 * 5 3 2 7 7 C 1.34778 * 120.97966 * 129.44272 * 6 5 3 8 8 O 1.21351 * 119.99881 * 1.44652 * 7 6 5 9 9 C 1.49446 * 120.00238 * 181.44328 * 7 6 5 10 10 O 1.21351 * 119.99966 * 353.53710 * 9 7 6 11 11 N 1.34774 * 120.00134 * 173.53860 * 9 7 6 12 12 C 1.46502 * 120.00049 * 180.02562 * 11 9 7 13 13 C 1.52992 * 109.47319 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47592 * 59.99631 * 13 12 11 15 15 C 1.53004 * 109.47151 * 299.99673 * 13 12 11 16 16 C 1.50698 * 109.47512 * 180.02562 * 13 12 11 17 17 H 1.08011 * 119.99865 * 359.71728 * 16 13 12 18 18 C 1.37875 * 120.00575 * 179.97438 * 16 13 12 19 19 N 1.31514 * 119.99467 * 0.02562 * 18 16 13 20 20 Si 1.86796 * 120.00376 * 179.97438 * 18 16 13 21 21 H 1.48512 * 109.46764 * 60.00295 * 20 18 16 22 22 H 1.48503 * 109.47288 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47284 * 300.00651 * 20 18 16 24 24 C 1.47142 * 118.03810 * 309.71663 * 6 5 3 25 25 C 1.52879 * 108.61120 * 50.22865 * 24 6 5 26 26 H 1.09000 * 109.36852 * 67.81292 * 25 24 6 27 27 C 1.52995 * 109.58716 * 187.92398 * 25 24 6 28 28 O 1.42963 * 109.55753 * 294.77446 * 3 2 1 29 29 H 1.08996 * 109.47349 * 59.99543 * 1 2 3 30 30 H 1.08999 * 109.47436 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46696 * 299.99738 * 1 2 3 32 32 H 1.08999 * 109.46385 * 240.00260 * 2 1 3 33 33 H 1.08996 * 109.46889 * 120.00187 * 2 1 3 34 34 H 1.09004 * 109.67669 * 52.55236 * 5 3 2 35 35 H 1.08998 * 109.70888 * 292.02397 * 5 3 2 36 36 H 0.96996 * 120.00116 * 359.97438 * 11 9 7 37 37 H 1.09001 * 109.47045 * 59.99403 * 12 11 9 38 38 H 1.09007 * 109.46985 * 299.99681 * 12 11 9 39 39 H 1.08996 * 109.47716 * 180.02562 * 14 13 12 40 40 H 1.09003 * 109.47133 * 300.00497 * 14 13 12 41 41 H 1.09004 * 109.47072 * 59.99674 * 14 13 12 42 42 H 1.09001 * 109.47021 * 300.00362 * 15 13 12 43 43 H 1.09004 * 109.47197 * 59.99764 * 15 13 12 44 44 H 1.09000 * 109.47687 * 180.02562 * 15 13 12 45 45 H 0.97003 * 119.99848 * 180.02562 * 19 18 16 46 46 H 1.09007 * 109.68206 * 170.01036 * 24 6 5 47 47 H 1.08997 * 109.68280 * 290.56228 * 24 6 5 48 48 H 1.08998 * 109.47432 * 179.88001 * 27 25 24 49 49 H 1.09004 * 109.47017 * 299.87886 * 27 25 24 50 50 H 1.08996 * 109.47052 * 59.88132 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6044 1.9826 0.8406 5 6 3.5678 1.4454 0.1259 6 7 4.0464 2.8240 -0.0632 7 6 4.8911 3.3924 0.8199 8 8 5.2888 2.7572 1.7743 9 6 5.3380 4.8049 0.6238 10 8 5.0362 5.4018 -0.3888 11 7 6.0762 5.4159 1.5714 12 6 6.5139 6.8008 1.3794 13 6 7.3292 7.2510 2.5931 14 6 8.5532 6.3464 2.7494 15 6 6.4636 7.1596 3.8514 16 6 7.7789 8.6758 2.3959 17 1 7.5138 9.2056 1.4928 18 6 8.5331 9.3013 3.3658 19 7 8.8606 8.6543 4.4630 20 14 9.0910 11.0671 3.1210 21 1 7.9029 11.9450 2.9688 22 1 9.8824 11.5041 4.2992 23 1 9.9317 11.1559 1.9000 24 6 3.5707 3.5657 -1.2416 25 6 2.0470 3.4577 -1.3038 26 1 1.6114 4.0052 -0.4679 27 6 1.5442 4.0502 -2.6217 28 8 1.6672 2.0818 -1.2232 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 4.0003 0.7986 -0.6376 35 1 3.8559 1.0891 1.1149 36 1 6.3172 4.9390 2.3810 37 1 5.6418 7.4454 1.2685 38 1 7.1302 6.8661 0.4827 39 1 9.1339 6.6669 3.6144 40 1 8.2276 5.3160 2.8923 41 1 9.1699 6.4115 1.8529 42 1 5.5916 7.8041 3.7401 43 1 6.1379 6.1293 3.9944 44 1 7.0443 7.4808 4.7161 45 1 9.3909 9.0945 5.1456 46 1 3.8603 4.6133 -1.1575 47 1 4.0035 3.1362 -2.1451 48 1 0.4580 3.9704 -2.6650 49 1 1.8341 5.0993 -2.6824 50 1 1.9823 3.5033 -3.4565 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422483201.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:23 Heat of formation + Delta-G solvation = -126.249806 kcal Electronic energy + Delta-G solvation = -29129.271070 eV Core-core repulsion = 25156.371828 eV Total energy + Delta-G solvation = -3972.899242 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.20013 -40.53616 -39.43398 -38.31796 -36.23536 -35.52041 -34.96069 -32.77852 -32.42637 -30.00982 -28.03380 -27.60036 -27.47533 -27.10525 -25.60710 -23.67784 -22.53981 -21.97198 -21.25719 -20.60258 -19.06594 -18.21658 -17.88381 -17.71634 -17.29389 -16.98709 -16.70771 -16.36426 -16.04905 -15.81698 -15.44728 -15.15893 -14.84569 -14.77461 -14.59130 -14.32594 -14.07637 -14.02521 -13.70762 -13.24006 -13.16822 -13.11458 -13.08213 -12.79721 -12.69160 -12.62187 -12.31449 -12.29553 -12.26627 -12.12439 -11.97754 -11.88146 -11.70571 -11.51727 -11.26941 -11.19415 -10.74466 -10.41977 -10.28181 -10.12605 -9.76992 -8.01489 -6.18072 0.22556 1.15176 1.46397 1.47836 1.54014 2.00958 2.31549 2.48507 2.61786 3.20803 3.22608 3.52345 3.81982 3.87439 3.97610 4.01693 4.28555 4.32007 4.32874 4.38649 4.46544 4.47729 4.59801 4.66434 4.70094 4.76420 4.85176 4.89221 4.94564 4.99411 5.02458 5.04199 5.09087 5.11149 5.15973 5.22752 5.28496 5.33451 5.43963 5.50813 5.63618 5.67368 5.81625 6.10190 6.14927 6.15872 6.19395 6.40489 6.59064 6.83905 6.90115 7.50046 8.97606 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.025036 B = 0.002537 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.140607 B =11032.435468 C =11647.852021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.110 4.110 3 C 0.081 3.919 4 H 0.056 0.944 5 C 0.075 3.925 6 N -0.582 5.582 7 C 0.510 3.490 8 O -0.542 6.542 9 C 0.502 3.498 10 O -0.531 6.531 11 N -0.676 5.676 12 C 0.142 3.858 13 C 0.051 3.949 14 C -0.125 4.125 15 C -0.125 4.125 16 C -0.525 4.525 17 H 0.053 0.947 18 C 0.026 3.974 19 N -0.902 5.902 20 Si 0.948 3.052 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.275 1.275 24 C 0.026 3.974 25 C 0.076 3.924 26 H 0.054 0.946 27 C -0.136 4.136 28 O -0.379 6.379 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.413 0.587 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.028 0.972 41 H 0.024 0.976 42 H 0.025 0.975 43 H 0.028 0.972 44 H 0.063 0.937 45 H 0.260 0.740 46 H 0.152 0.848 47 H 0.082 0.918 48 H 0.073 0.927 49 H 0.083 0.917 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.087 -15.439 -10.237 23.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.148 4.148 3 C 0.023 3.977 4 H 0.074 0.926 5 C -0.047 4.047 6 N -0.315 5.315 7 C 0.293 3.707 8 O -0.419 6.419 9 C 0.283 3.717 10 O -0.411 6.411 11 N -0.327 5.327 12 C 0.020 3.980 13 C 0.050 3.950 14 C -0.183 4.183 15 C -0.182 4.182 16 C -0.564 4.564 17 H 0.072 0.928 18 C -0.174 4.174 19 N -0.540 5.540 20 Si 0.775 3.225 21 H -0.200 1.200 22 H -0.213 1.213 23 H -0.201 1.201 24 C -0.095 4.095 25 C 0.018 3.982 26 H 0.072 0.928 27 C -0.194 4.194 28 O -0.298 6.298 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.118 0.882 36 H 0.251 0.749 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.047 0.953 41 H 0.043 0.957 42 H 0.044 0.956 43 H 0.047 0.953 44 H 0.082 0.918 45 H 0.069 0.931 46 H 0.168 0.832 47 H 0.101 0.899 48 H 0.092 0.908 49 H 0.102 0.898 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.052 -15.406 -10.397 23.917 hybrid contribution 0.870 0.999 0.689 1.493 sum -14.182 -14.407 -9.708 22.426 Atomic orbital electron populations 1.21677 0.94547 1.02355 1.01802 1.21527 0.97251 0.91942 1.04034 1.22577 0.91754 0.96159 0.87224 0.92623 1.22662 0.95678 0.81557 1.04761 1.48095 1.43884 1.15196 1.24321 1.20082 0.80316 0.87446 0.82871 1.90739 1.56194 1.64293 1.30699 1.20200 0.80060 0.87355 0.84082 1.90316 1.56021 1.66749 1.28040 1.46119 1.50000 1.15389 1.21200 1.21606 0.97958 0.78733 0.99707 1.18373 0.91801 0.94420 0.90404 1.21720 0.99394 0.96030 1.01145 1.21717 0.98165 0.97207 1.01155 1.21210 1.33438 0.97739 1.04004 0.92843 1.25502 0.95889 1.00995 0.95009 1.69922 1.38221 1.37532 1.08349 0.85772 0.78281 0.81159 0.77318 1.20010 1.21270 1.20095 1.23887 0.95480 1.03323 0.86812 1.22464 0.92616 0.82798 1.00307 0.92821 1.21690 1.02301 1.01188 0.94182 1.87945 1.79943 1.23943 1.38019 0.92896 0.91230 0.93023 0.90299 0.88812 0.88944 0.88168 0.74922 0.92198 0.92388 0.91823 0.95287 0.95722 0.95611 0.95283 0.91824 0.93074 0.83183 0.89935 0.90823 0.89794 0.91147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.81 71.98 0.71 -1.10 16 2 C -0.11 -1.40 5.65 30.59 0.17 -1.23 16 3 C 0.08 1.45 2.77 30.69 0.09 1.54 16 4 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 5 C 0.08 1.52 5.93 86.36 0.51 2.03 16 6 N -0.58 -14.76 3.03 -819.74 -2.48 -17.24 16 7 C 0.51 15.71 7.77 87.27 0.68 16.39 16 8 O -0.54 -18.52 15.97 -3.25 -0.05 -18.57 16 9 C 0.50 16.76 7.81 87.27 0.68 17.44 16 10 O -0.53 -18.33 13.04 -3.25 -0.04 -18.37 16 11 N -0.68 -23.94 4.95 -464.42 -2.30 -26.24 16 12 C 0.14 5.69 4.50 86.38 0.39 6.08 16 13 C 0.05 2.30 0.50 -52.93 -0.03 2.27 16 14 C -0.13 -5.63 8.08 71.98 0.58 -5.05 16 15 C -0.12 -5.57 8.08 71.98 0.58 -4.99 16 16 C -0.53 -26.79 8.01 25.60 0.21 -26.59 16 17 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 18 C 0.03 1.33 5.15 84.65 0.44 1.77 16 19 N -0.90 -47.96 9.35 21.45 0.20 -47.76 16 20 Si 0.95 41.71 29.54 68.60 2.03 43.73 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 22 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 23 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 24 C 0.03 0.59 5.64 86.22 0.49 1.08 16 25 C 0.08 1.50 3.39 30.55 0.10 1.61 16 26 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 27 C -0.14 -2.06 9.57 71.98 0.69 -1.37 16 28 O -0.38 -7.53 9.58 -148.98 -1.43 -8.96 16 29 H 0.05 0.76 7.83 -2.39 -0.02 0.74 16 30 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.10 2.11 7.09 -2.39 -0.02 2.09 16 36 H 0.41 14.47 5.65 -92.71 -0.52 13.95 16 37 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 39 H 0.06 3.19 6.07 -2.39 -0.01 3.18 16 40 H 0.03 1.15 6.86 -2.39 -0.02 1.13 16 41 H 0.02 1.08 8.14 -2.38 -0.02 1.06 16 42 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.03 1.13 6.86 -2.39 -0.02 1.12 16 44 H 0.06 3.18 6.07 -2.39 -0.01 3.16 16 45 H 0.26 13.39 8.31 -92.71 -0.77 12.62 16 46 H 0.15 4.00 3.98 -71.84 -0.29 3.71 16 47 H 0.08 1.75 8.13 -2.39 -0.02 1.73 16 48 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 49 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 50 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -57.04 388.02 2.34 -54.71 By element: Atomic # 1 Polarization: 28.70 SS G_CDS: 0.13 Total: 28.83 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: 6.28 Total: 9.88 kcal Atomic # 7 Polarization: -86.66 SS G_CDS: -4.58 Total: -91.24 kcal Atomic # 8 Polarization: -44.39 SS G_CDS: -1.52 Total: -45.91 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.73 kcal Total: -57.04 2.34 -54.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422483201.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.542 kcal (2) G-P(sol) polarization free energy of solvation -57.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds