Wall clock time and date at job start Tue Mar 31 2020 15:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47207 * 2 1 4 4 H 1.09004 * 109.51177 * 305.10701 * 3 2 1 5 5 C 1.53293 * 109.51644 * 185.00335 * 3 2 1 6 6 N 1.47148 * 108.38557 * 187.77836 * 5 3 2 7 7 C 1.34778 * 120.97966 * 230.50846 * 6 5 3 8 8 O 1.21352 * 119.99623 * 7.93912 * 7 6 5 9 9 C 1.49449 * 120.00071 * 187.92974 * 7 6 5 10 10 O 1.21348 * 119.99670 * 6.67766 * 9 7 6 11 11 N 1.34774 * 120.00179 * 186.66919 * 9 7 6 12 12 C 1.46496 * 120.00285 * 180.02562 * 11 9 7 13 13 C 1.53003 * 109.47337 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.47040 * 60.00022 * 13 12 11 15 15 C 1.52997 * 109.46863 * 300.00038 * 13 12 11 16 16 C 1.50701 * 109.47192 * 180.02562 * 13 12 11 17 17 H 1.07999 * 119.99820 * 0.02562 * 16 13 12 18 18 C 1.37869 * 120.00136 * 179.97438 * 16 13 12 19 19 N 1.31516 * 120.00144 * 0.02562 * 18 16 13 20 20 Si 1.86797 * 120.00242 * 180.02562 * 18 16 13 21 21 H 1.48497 * 109.46996 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47162 * 120.00109 * 20 18 16 23 23 H 1.48506 * 109.47046 * 240.00319 * 20 18 16 24 24 C 1.47151 * 118.03628 * 50.78212 * 6 5 3 25 25 C 1.53709 * 108.16085 * 309.15855 * 24 6 5 26 26 H 1.09004 * 109.65878 * 292.57178 * 25 24 6 27 27 C 1.53008 * 109.48201 * 172.40172 * 25 24 6 28 28 O 1.42957 * 109.14737 * 52.54213 * 25 24 6 29 29 H 1.09005 * 109.47417 * 59.99961 * 1 2 3 30 30 H 1.08999 * 109.47213 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46978 * 299.99789 * 1 2 3 32 32 H 1.08997 * 109.47271 * 240.00603 * 2 1 3 33 33 H 1.08992 * 109.47578 * 120.00269 * 2 1 3 34 34 H 1.09001 * 109.68202 * 68.04606 * 5 3 2 35 35 H 1.09007 * 109.67574 * 307.49822 * 5 3 2 36 36 H 0.97005 * 119.99542 * 0.02562 * 11 9 7 37 37 H 1.09000 * 109.47174 * 60.00538 * 12 11 9 38 38 H 1.09000 * 109.46908 * 300.00313 * 12 11 9 39 39 H 1.08998 * 109.47026 * 299.99863 * 14 13 12 40 40 H 1.09002 * 109.47069 * 180.02562 * 14 13 12 41 41 H 1.09000 * 109.47402 * 60.00019 * 14 13 12 42 42 H 1.09002 * 109.47050 * 179.97438 * 15 13 12 43 43 H 1.09000 * 109.47265 * 299.99679 * 15 13 12 44 44 H 1.08998 * 109.47424 * 60.00002 * 15 13 12 45 45 H 0.96995 * 120.00432 * 179.97438 * 19 18 16 46 46 H 1.08998 * 109.68333 * 68.94179 * 24 6 5 47 47 H 1.09000 * 109.67610 * 189.49149 * 24 6 5 48 48 H 1.08999 * 109.46753 * 300.36071 * 27 25 24 49 49 H 1.09000 * 109.47198 * 60.36186 * 27 25 24 50 50 H 1.08997 * 109.47061 * 180.36335 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6043 1.9828 -0.8405 5 6 3.5677 1.4456 -0.1260 6 7 4.0464 2.8239 0.0644 7 6 4.8918 3.3928 -0.8177 8 8 5.1564 2.8252 -1.8572 9 6 5.5032 4.7227 -0.5158 10 8 5.3362 5.2344 0.5717 11 7 6.2403 5.3535 -1.4514 12 6 6.8401 6.6569 -1.1553 13 6 7.6182 7.1496 -2.3770 14 6 6.6666 7.2848 -3.5673 15 6 8.7216 6.1459 -2.7176 16 6 8.2358 8.4900 -2.0722 17 1 8.0884 8.9448 -1.1037 18 6 8.9898 9.1353 -3.0292 19 7 9.1698 8.5813 -4.2083 20 14 9.7559 10.7965 -2.6511 21 1 9.4057 11.1992 -1.2653 22 1 11.2321 10.7021 -2.7816 23 1 9.2382 11.8092 -3.6060 24 6 3.5797 3.5607 1.2496 25 6 2.0471 3.4565 1.3057 26 1 1.6115 4.0048 0.4703 27 6 1.5433 4.0482 2.6237 28 8 1.6674 2.0807 1.2238 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.8552 1.0904 -1.1156 35 1 4.0002 0.7981 0.6368 36 1 6.3735 4.9445 -2.3208 37 1 7.5178 6.5606 -0.3070 38 1 6.0539 7.3720 -0.9130 39 1 6.2203 6.3151 -3.7876 40 1 7.2210 7.6354 -4.4378 41 1 5.8804 7.9998 -3.3247 42 1 9.2757 6.4967 -3.5883 43 1 9.3997 6.0496 -1.8696 44 1 8.2754 5.1762 -2.9380 45 1 9.7000 9.0355 -4.8817 46 1 4.0134 3.1226 2.1485 47 1 3.8751 4.6069 1.1712 48 1 1.9807 3.5006 3.4585 49 1 1.8333 5.0971 2.6854 50 1 0.4571 3.9684 2.6661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000422483202.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:28 Heat of formation + Delta-G solvation = -113.997885 kcal Electronic energy + Delta-G solvation = -29099.116747 eV Core-core repulsion = 25126.748789 eV Total energy + Delta-G solvation = -3972.367959 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.97858 -39.41715 -38.16662 -36.64806 -35.14234 -34.72916 -33.34092 -31.69587 -30.94504 -29.10961 -26.79770 -26.18683 -25.76343 -25.34431 -24.48616 -22.51989 -21.78864 -21.10688 -19.89288 -18.87216 -17.78103 -17.13898 -16.85576 -16.12229 -16.02930 -15.67322 -15.35442 -14.95942 -14.77849 -14.60550 -14.40634 -14.09904 -13.72826 -13.52079 -13.24156 -12.99163 -12.87760 -12.72300 -12.47883 -12.31784 -12.23490 -12.07588 -11.57536 -11.45052 -11.32474 -11.27942 -11.22915 -11.15560 -10.93233 -10.80545 -10.69045 -10.44226 -10.30537 -10.22812 -9.69863 -9.48058 -9.11931 -8.83950 -8.74252 -8.65551 -8.41150 -6.05980 -4.16921 1.53985 2.34920 3.24701 3.30972 3.33480 3.35058 3.37478 3.62792 4.28989 4.35927 4.59229 4.61111 4.66797 4.73130 4.85962 4.97942 5.03156 5.11875 5.20840 5.27751 5.37844 5.42967 5.53865 5.58319 5.62030 5.64084 5.80811 5.83972 5.94124 6.00765 6.04927 6.10168 6.17735 6.42056 6.60765 6.79177 6.80752 6.88687 6.94367 6.95977 6.97329 7.28693 7.50992 7.51255 7.65795 7.87800 7.96130 8.08089 8.25112 8.35457 8.83551 9.49289 10.95501 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.025810 B = 0.002516 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.582098 B =11125.728708 C =11754.256711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C 0.080 3.920 4 H 0.063 0.937 5 C 0.078 3.922 6 N -0.592 5.592 7 C 0.510 3.490 8 O -0.520 6.520 9 C 0.498 3.502 10 O -0.527 6.527 11 N -0.676 5.676 12 C 0.127 3.873 13 C 0.056 3.944 14 C -0.134 4.134 15 C -0.134 4.134 16 C -0.507 4.507 17 H 0.059 0.941 18 C 0.066 3.934 19 N -0.884 5.884 20 Si 0.894 3.106 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.047 3.953 25 C 0.073 3.927 26 H 0.061 0.939 27 C -0.141 4.141 28 O -0.374 6.374 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.103 0.897 35 H 0.079 0.921 36 H 0.411 0.589 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.008 0.992 40 H 0.087 0.913 41 H 0.028 0.972 42 H 0.087 0.913 43 H 0.028 0.972 44 H 0.008 0.992 45 H 0.260 0.740 46 H 0.076 0.924 47 H 0.149 0.851 48 H 0.065 0.935 49 H 0.077 0.923 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.981 -14.242 8.665 22.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C 0.022 3.978 4 H 0.081 0.919 5 C -0.044 4.044 6 N -0.326 5.326 7 C 0.293 3.707 8 O -0.395 6.395 9 C 0.278 3.722 10 O -0.407 6.407 11 N -0.326 5.326 12 C 0.005 3.995 13 C 0.055 3.945 14 C -0.192 4.192 15 C -0.192 4.192 16 C -0.545 4.545 17 H 0.077 0.923 18 C -0.135 4.135 19 N -0.522 5.522 20 Si 0.722 3.278 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.075 4.075 25 C 0.015 3.985 26 H 0.079 0.921 27 C -0.198 4.198 28 O -0.294 6.294 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.121 0.879 35 H 0.097 0.903 36 H 0.249 0.751 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.027 0.973 40 H 0.106 0.894 41 H 0.047 0.953 42 H 0.106 0.894 43 H 0.047 0.953 44 H 0.027 0.973 45 H 0.070 0.930 46 H 0.094 0.906 47 H 0.166 0.834 48 H 0.084 0.916 49 H 0.096 0.904 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.911 -14.204 8.809 22.398 hybrid contribution 0.684 0.731 -0.412 1.082 sum -14.227 -13.474 8.398 21.318 Atomic orbital electron populations 1.21694 0.94877 1.01615 1.02385 1.21502 0.97046 0.93549 1.03073 1.22493 0.92778 0.94850 0.87699 0.91868 1.22442 0.94851 0.82772 1.04353 1.47955 1.45265 1.14533 1.24856 1.20461 0.79755 0.87029 0.83460 1.90744 1.60397 1.64400 1.23990 1.19929 0.81144 0.85626 0.85479 1.90469 1.60034 1.67213 1.23010 1.46273 1.48141 1.21708 1.16527 1.21985 0.96499 0.80224 1.00762 1.18390 0.91743 0.94953 0.89425 1.21861 0.98219 0.96707 1.02370 1.21864 0.99541 0.95169 1.02621 1.20972 1.31382 1.02420 0.99747 0.92273 1.24888 0.95964 0.97721 0.94965 1.69813 1.39781 1.38093 1.04553 0.86498 0.78952 0.83868 0.78452 1.19749 1.21039 1.21045 1.23637 0.93898 1.02749 0.87188 1.22646 0.93761 0.82793 0.99339 0.92066 1.21702 1.01833 1.00951 0.95364 1.87932 1.79984 1.23882 1.37578 0.92882 0.92619 0.91867 0.90249 0.90796 0.87919 0.90303 0.75105 0.91849 0.91847 0.97338 0.89390 0.95309 0.89399 0.95305 0.97281 0.92962 0.90563 0.83392 0.91565 0.90407 0.91604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.81 37.16 0.36 -0.68 16 2 C -0.11 -0.84 5.64 -26.73 -0.15 -1.00 16 3 C 0.08 0.78 2.78 -26.58 -0.07 0.70 16 4 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 5 C 0.08 0.85 5.94 -3.54 -0.02 0.83 16 6 N -0.59 -7.83 3.01 -172.53 -0.52 -8.35 16 7 C 0.51 8.08 7.75 -11.58 -0.09 7.99 16 8 O -0.52 -9.11 15.97 5.50 0.09 -9.02 16 9 C 0.50 8.57 7.75 -11.59 -0.09 8.48 16 10 O -0.53 -9.44 13.21 5.50 0.07 -9.37 16 11 N -0.68 -12.28 4.95 -60.73 -0.30 -12.58 16 12 C 0.13 2.58 4.50 -4.04 -0.02 2.56 16 13 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 14 C -0.13 -3.01 8.08 37.16 0.30 -2.71 16 15 C -0.13 -3.04 8.08 37.16 0.30 -2.74 16 16 C -0.51 -12.92 8.01 -34.44 -0.28 -13.20 16 17 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 18 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 19 N -0.88 -23.35 9.35 55.43 0.52 -22.83 16 20 Si 0.89 20.37 29.54 -169.99 -5.02 15.35 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 C 0.05 0.56 5.45 -3.32 -0.02 0.54 16 25 C 0.07 0.75 3.41 -26.36 -0.09 0.66 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 C -0.14 -1.17 9.57 37.16 0.36 -0.81 16 28 O -0.37 -3.99 9.57 -35.23 -0.34 -4.33 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.50 7.83 -51.93 -0.41 0.09 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.10 1.15 7.07 -51.93 -0.37 0.78 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.41 7.43 5.65 -40.82 -0.23 7.20 16 37 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.01 0.16 6.86 -51.93 -0.36 -0.20 16 40 H 0.09 2.19 6.07 -51.93 -0.32 1.87 16 41 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.09 2.20 6.07 -51.93 -0.32 1.88 16 43 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.01 0.17 6.86 -51.93 -0.36 -0.19 16 45 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 46 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 47 H 0.15 2.02 4.48 -54.03 -0.24 1.77 16 48 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 388.43 15.07 5.85 5.85 Total: -1.00 -27.54 388.43 -7.80 -35.33 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -8.47 Total: 6.49 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: 0.32 Total: 3.44 kcal Atomic # 7 Polarization: -43.46 SS G_CDS: -0.30 Total: -43.76 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.18 Total: -22.72 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -27.54 -7.80 -35.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422483202.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.666 kcal (2) G-P(sol) polarization free energy of solvation -27.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds