Wall clock time and date at job start Tue Mar 31 2020 15:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47207 * 2 1 4 4 H 1.09004 * 109.51177 * 305.10701 * 3 2 1 5 5 C 1.53293 * 109.51644 * 185.00335 * 3 2 1 6 6 N 1.47148 * 108.38557 * 187.77836 * 5 3 2 7 7 C 1.34778 * 120.97966 * 230.50846 * 6 5 3 8 8 O 1.21352 * 119.99623 * 7.93912 * 7 6 5 9 9 C 1.49449 * 120.00071 * 187.92974 * 7 6 5 10 10 O 1.21348 * 119.99670 * 6.67766 * 9 7 6 11 11 N 1.34774 * 120.00179 * 186.66919 * 9 7 6 12 12 C 1.46496 * 120.00285 * 180.02562 * 11 9 7 13 13 C 1.53003 * 109.47337 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.47040 * 60.00022 * 13 12 11 15 15 C 1.52997 * 109.46863 * 300.00038 * 13 12 11 16 16 C 1.50701 * 109.47192 * 180.02562 * 13 12 11 17 17 H 1.07999 * 119.99820 * 0.02562 * 16 13 12 18 18 C 1.37869 * 120.00136 * 179.97438 * 16 13 12 19 19 N 1.31516 * 120.00144 * 0.02562 * 18 16 13 20 20 Si 1.86797 * 120.00242 * 180.02562 * 18 16 13 21 21 H 1.48497 * 109.46996 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47162 * 120.00109 * 20 18 16 23 23 H 1.48506 * 109.47046 * 240.00319 * 20 18 16 24 24 C 1.47151 * 118.03628 * 50.78212 * 6 5 3 25 25 C 1.53709 * 108.16085 * 309.15855 * 24 6 5 26 26 H 1.09004 * 109.65878 * 292.57178 * 25 24 6 27 27 C 1.53008 * 109.48201 * 172.40172 * 25 24 6 28 28 O 1.42957 * 109.14737 * 52.54213 * 25 24 6 29 29 H 1.09005 * 109.47417 * 59.99961 * 1 2 3 30 30 H 1.08999 * 109.47213 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46978 * 299.99789 * 1 2 3 32 32 H 1.08997 * 109.47271 * 240.00603 * 2 1 3 33 33 H 1.08992 * 109.47578 * 120.00269 * 2 1 3 34 34 H 1.09001 * 109.68202 * 68.04606 * 5 3 2 35 35 H 1.09007 * 109.67574 * 307.49822 * 5 3 2 36 36 H 0.97005 * 119.99542 * 0.02562 * 11 9 7 37 37 H 1.09000 * 109.47174 * 60.00538 * 12 11 9 38 38 H 1.09000 * 109.46908 * 300.00313 * 12 11 9 39 39 H 1.08998 * 109.47026 * 299.99863 * 14 13 12 40 40 H 1.09002 * 109.47069 * 180.02562 * 14 13 12 41 41 H 1.09000 * 109.47402 * 60.00019 * 14 13 12 42 42 H 1.09002 * 109.47050 * 179.97438 * 15 13 12 43 43 H 1.09000 * 109.47265 * 299.99679 * 15 13 12 44 44 H 1.08998 * 109.47424 * 60.00002 * 15 13 12 45 45 H 0.96995 * 120.00432 * 179.97438 * 19 18 16 46 46 H 1.08998 * 109.68333 * 68.94179 * 24 6 5 47 47 H 1.09000 * 109.67610 * 189.49149 * 24 6 5 48 48 H 1.08999 * 109.46753 * 300.36071 * 27 25 24 49 49 H 1.09000 * 109.47198 * 60.36186 * 27 25 24 50 50 H 1.08997 * 109.47061 * 180.36335 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6043 1.9828 -0.8405 5 6 3.5677 1.4456 -0.1260 6 7 4.0464 2.8239 0.0644 7 6 4.8918 3.3928 -0.8177 8 8 5.1564 2.8252 -1.8572 9 6 5.5032 4.7227 -0.5158 10 8 5.3362 5.2344 0.5717 11 7 6.2403 5.3535 -1.4514 12 6 6.8401 6.6569 -1.1553 13 6 7.6182 7.1496 -2.3770 14 6 6.6666 7.2848 -3.5673 15 6 8.7216 6.1459 -2.7176 16 6 8.2358 8.4900 -2.0722 17 1 8.0884 8.9448 -1.1037 18 6 8.9898 9.1353 -3.0292 19 7 9.1698 8.5813 -4.2083 20 14 9.7559 10.7965 -2.6511 21 1 9.4057 11.1992 -1.2653 22 1 11.2321 10.7021 -2.7816 23 1 9.2382 11.8092 -3.6060 24 6 3.5797 3.5607 1.2496 25 6 2.0471 3.4565 1.3057 26 1 1.6115 4.0048 0.4703 27 6 1.5433 4.0482 2.6237 28 8 1.6674 2.0807 1.2238 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.8552 1.0904 -1.1156 35 1 4.0002 0.7981 0.6368 36 1 6.3735 4.9445 -2.3208 37 1 7.5178 6.5606 -0.3070 38 1 6.0539 7.3720 -0.9130 39 1 6.2203 6.3151 -3.7876 40 1 7.2210 7.6354 -4.4378 41 1 5.8804 7.9998 -3.3247 42 1 9.2757 6.4967 -3.5883 43 1 9.3997 6.0496 -1.8696 44 1 8.2754 5.1762 -2.9380 45 1 9.7000 9.0355 -4.8817 46 1 4.0134 3.1226 2.1485 47 1 3.8751 4.6069 1.1712 48 1 1.9807 3.5006 3.4585 49 1 1.8333 5.0971 2.6854 50 1 0.4571 3.9684 2.6661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422483202.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:27 Heat of formation + Delta-G solvation = -130.087901 kcal Electronic energy + Delta-G solvation = -29099.814463 eV Core-core repulsion = 25126.748789 eV Total energy + Delta-G solvation = -3973.065674 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.16969 -40.52857 -39.41701 -38.29806 -36.23283 -35.50874 -34.95537 -32.77297 -32.41135 -30.01006 -28.02464 -27.60281 -27.47573 -27.11194 -25.59925 -23.66264 -22.54735 -21.97881 -21.18747 -20.60886 -19.06570 -18.23943 -17.88554 -17.70484 -17.31049 -16.92860 -16.70622 -16.37081 -16.02614 -15.76433 -15.46343 -15.14786 -14.84644 -14.78086 -14.57722 -14.34630 -14.07215 -14.03245 -13.63306 -13.25570 -13.15884 -13.13115 -13.06710 -12.79373 -12.72333 -12.56203 -12.40384 -12.29371 -12.28233 -12.12371 -11.98369 -11.87645 -11.67958 -11.52064 -11.27920 -11.18379 -10.73616 -10.45151 -10.38487 -10.12219 -9.75341 -8.02114 -6.18526 0.22919 1.15871 1.43058 1.47579 1.56504 2.00524 2.32124 2.48222 2.61163 3.22073 3.23112 3.51380 3.79668 3.86639 3.98114 4.00872 4.28267 4.32009 4.32817 4.38123 4.46281 4.47079 4.59364 4.66342 4.70979 4.77622 4.85511 4.89034 4.93702 4.99393 5.02299 5.03506 5.09517 5.11737 5.15765 5.23055 5.28489 5.28697 5.44442 5.48593 5.63390 5.67402 5.80323 6.09870 6.15160 6.15700 6.19207 6.40181 6.58401 6.83760 6.89968 7.49708 8.97382 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.025810 B = 0.002516 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.582098 B =11125.728708 C =11754.256711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.110 4.110 3 C 0.082 3.918 4 H 0.056 0.944 5 C 0.076 3.924 6 N -0.585 5.585 7 C 0.511 3.489 8 O -0.540 6.540 9 C 0.499 3.501 10 O -0.534 6.534 11 N -0.678 5.678 12 C 0.143 3.857 13 C 0.050 3.950 14 C -0.124 4.124 15 C -0.125 4.125 16 C -0.523 4.523 17 H 0.053 0.947 18 C 0.025 3.975 19 N -0.902 5.902 20 Si 0.948 3.052 21 H -0.271 1.271 22 H -0.284 1.284 23 H -0.283 1.283 24 C 0.047 3.953 25 C 0.075 3.925 26 H 0.056 0.944 27 C -0.137 4.137 28 O -0.378 6.378 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.413 0.587 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.028 0.972 40 H 0.063 0.937 41 H 0.025 0.975 42 H 0.063 0.937 43 H 0.023 0.977 44 H 0.028 0.972 45 H 0.260 0.740 46 H 0.084 0.916 47 H 0.134 0.866 48 H 0.069 0.931 49 H 0.083 0.917 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.111 -15.316 9.650 24.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.148 4.148 3 C 0.023 3.977 4 H 0.074 0.926 5 C -0.046 4.046 6 N -0.318 5.318 7 C 0.294 3.706 8 O -0.418 6.418 9 C 0.281 3.719 10 O -0.414 6.414 11 N -0.329 5.329 12 C 0.021 3.979 13 C 0.049 3.951 14 C -0.182 4.182 15 C -0.183 4.183 16 C -0.561 4.561 17 H 0.071 0.929 18 C -0.174 4.174 19 N -0.541 5.541 20 Si 0.775 3.225 21 H -0.195 1.195 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.074 4.074 25 C 0.017 3.983 26 H 0.074 0.926 27 C -0.194 4.194 28 O -0.297 6.297 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.112 0.888 33 H 0.097 0.903 34 H 0.119 0.881 35 H 0.111 0.889 36 H 0.250 0.750 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.047 0.953 40 H 0.082 0.918 41 H 0.044 0.956 42 H 0.082 0.918 43 H 0.043 0.957 44 H 0.047 0.953 45 H 0.069 0.931 46 H 0.102 0.898 47 H 0.151 0.849 48 H 0.088 0.912 49 H 0.102 0.898 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.070 -15.297 9.826 24.265 hybrid contribution 0.985 1.018 -0.668 1.566 sum -15.086 -14.279 9.159 22.701 Atomic orbital electron populations 1.21676 0.94553 1.02346 1.01807 1.21527 0.97250 0.91962 1.04032 1.22576 0.91767 0.96156 0.87186 0.92559 1.22669 0.95793 0.81360 1.04778 1.48086 1.43928 1.15432 1.24371 1.20126 0.80323 0.86390 0.83768 1.90737 1.61518 1.64691 1.24852 1.20197 0.80633 0.86080 0.85033 1.90489 1.60051 1.67635 1.23233 1.46117 1.48697 1.21150 1.16938 1.21587 0.95975 0.81177 0.99202 1.18386 0.92058 0.94115 0.90507 1.21710 0.97722 0.97633 1.01150 1.21717 0.99253 0.96037 1.01259 1.21260 1.31670 1.03722 0.99496 0.92890 1.25503 0.96538 1.00419 0.94987 1.69932 1.40123 1.38992 1.05011 0.85655 0.78023 0.80623 0.78184 1.19527 1.21018 1.20953 1.23651 0.95235 1.01729 0.86834 1.22660 0.92365 0.82920 1.00370 0.92560 1.21701 1.02337 1.01184 0.94207 1.87948 1.79884 1.23896 1.38013 0.93019 0.91260 0.92877 0.88832 0.90288 0.88122 0.88857 0.74969 0.92542 0.92263 0.95275 0.91836 0.95581 0.91813 0.95737 0.95290 0.93084 0.89784 0.84888 0.91153 0.89801 0.90752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.81 71.98 0.71 -1.06 16 2 C -0.11 -1.38 5.64 30.59 0.17 -1.20 16 3 C 0.08 1.43 2.78 30.69 0.09 1.52 16 4 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 5 C 0.08 1.51 5.94 86.35 0.51 2.02 16 6 N -0.59 -14.73 3.01 -818.12 -2.47 -17.20 16 7 C 0.51 15.74 7.75 87.27 0.68 16.42 16 8 O -0.54 -18.46 15.97 -3.25 -0.05 -18.51 16 9 C 0.50 16.83 7.75 87.27 0.68 17.51 16 10 O -0.53 -18.75 13.21 -3.24 -0.04 -18.79 16 11 N -0.68 -24.18 4.95 -464.42 -2.30 -26.48 16 12 C 0.14 5.76 4.50 86.38 0.39 6.15 16 13 C 0.05 2.28 0.50 -52.93 -0.03 2.25 16 14 C -0.12 -5.57 8.08 71.98 0.58 -4.99 16 15 C -0.12 -5.64 8.08 71.98 0.58 -5.06 16 16 C -0.52 -26.77 8.01 25.60 0.21 -26.56 16 17 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 18 C 0.03 1.30 5.15 84.65 0.44 1.74 16 19 N -0.90 -48.04 9.35 21.44 0.20 -47.84 16 20 Si 0.95 41.85 29.54 68.60 2.03 43.88 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 22 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 23 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 24 C 0.05 1.06 5.45 86.49 0.47 1.53 16 25 C 0.08 1.44 3.41 30.84 0.11 1.55 16 26 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 27 C -0.14 -2.01 9.57 71.98 0.69 -1.32 16 28 O -0.38 -7.35 9.57 -148.98 -1.43 -8.77 16 29 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.05 0.75 7.83 -2.39 -0.02 0.73 16 32 H 0.09 0.92 8.14 -2.39 -0.02 0.91 16 33 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.10 2.09 7.07 -2.39 -0.02 2.08 16 35 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 36 H 0.41 14.55 5.65 -92.70 -0.52 14.02 16 37 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 39 H 0.03 1.14 6.86 -2.39 -0.02 1.12 16 40 H 0.06 3.18 6.07 -2.39 -0.01 3.16 16 41 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.06 3.21 6.07 -2.39 -0.01 3.19 16 43 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.03 1.15 6.86 -2.39 -0.02 1.13 16 45 H 0.26 13.32 8.31 -92.71 -0.77 12.55 16 46 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.13 3.50 4.48 -35.64 -0.16 3.34 16 48 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 50 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -57.60 388.43 2.46 -55.14 By element: Atomic # 1 Polarization: 27.83 SS G_CDS: 0.26 Total: 28.09 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: 6.26 Total: 10.49 kcal Atomic # 7 Polarization: -86.95 SS G_CDS: -4.56 Total: -91.51 kcal Atomic # 8 Polarization: -44.55 SS G_CDS: -1.52 Total: -46.08 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -57.60 2.46 -55.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422483202.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.950 kcal (2) G-P(sol) polarization free energy of solvation -57.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds