Wall clock time and date at job start Tue Mar 31 2020 15:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47056 * 2 1 4 4 H 1.09002 * 109.70876 * 58.81654 * 3 2 1 5 5 C 1.53287 * 109.68368 * 298.27679 * 3 2 1 6 6 O 1.42966 * 109.22426 * 187.97398 * 5 3 2 7 7 C 1.42958 * 114.16845 * 62.58119 * 6 5 3 8 8 H 1.09004 * 109.51057 * 57.34129 * 7 6 5 9 9 C 1.52997 * 109.51536 * 177.44737 * 7 6 5 10 10 C 1.53297 * 109.22173 * 297.42352 * 7 6 5 11 11 N 1.47145 * 108.38827 * 52.29804 * 10 7 6 12 12 C 1.34776 * 120.98247 * 129.44281 * 11 10 7 13 13 O 1.21348 * 119.99755 * 186.39814 * 12 11 10 14 14 C 1.49446 * 119.99939 * 6.40036 * 12 11 10 15 15 O 1.21350 * 120.00071 * 5.58870 * 14 12 11 16 16 N 1.34778 * 120.00161 * 185.59381 * 14 12 11 17 17 C 1.46494 * 120.00300 * 180.02562 * 16 14 12 18 18 C 1.53004 * 109.47245 * 180.02562 * 17 16 14 19 19 C 1.53005 * 109.46592 * 299.99494 * 18 17 16 20 20 C 1.52997 * 109.47307 * 59.99502 * 18 17 16 21 21 C 1.50697 * 109.46981 * 179.97438 * 18 17 16 22 22 H 1.08004 * 120.00004 * 4.99700 * 21 18 17 23 23 C 1.37881 * 120.00124 * 184.99237 * 21 18 17 24 24 N 1.31510 * 120.00361 * 187.80496 * 23 21 18 25 25 Si 1.86800 * 119.99718 * 7.80297 * 23 21 18 26 26 H 1.48502 * 109.47320 * 94.06248 * 25 23 21 27 27 H 1.48493 * 109.47126 * 214.06778 * 25 23 21 28 28 H 1.48508 * 109.47232 * 334.06558 * 25 23 21 29 29 H 1.08997 * 109.46617 * 65.08475 * 1 2 3 30 30 H 1.09002 * 109.47009 * 185.08338 * 1 2 3 31 31 H 1.08991 * 109.46889 * 305.08484 * 1 2 3 32 32 H 1.08998 * 109.47613 * 240.00190 * 2 1 3 33 33 H 1.09002 * 109.47555 * 120.00320 * 2 1 3 34 34 H 1.09003 * 109.51318 * 68.05327 * 5 3 2 35 35 H 1.09000 * 109.51894 * 307.89655 * 5 3 2 36 36 H 1.09003 * 109.47249 * 59.89301 * 9 7 6 37 37 H 1.08995 * 109.47271 * 179.89856 * 9 7 6 38 38 H 1.09007 * 109.46648 * 299.89902 * 9 7 6 39 39 H 1.09000 * 109.68508 * 172.02764 * 10 7 6 40 40 H 1.09008 * 109.67891 * 292.57562 * 10 7 6 41 41 H 0.97000 * 119.99745 * 359.97438 * 16 14 12 42 42 H 1.09010 * 109.46602 * 299.99462 * 17 16 14 43 43 H 1.09000 * 109.47753 * 59.99255 * 17 16 14 44 44 H 1.08992 * 109.46938 * 58.13605 * 19 18 17 45 45 H 1.09000 * 109.46532 * 178.13410 * 19 18 17 46 46 H 1.08996 * 109.46734 * 298.13253 * 19 18 17 47 47 H 1.08996 * 109.47376 * 59.99976 * 20 18 17 48 48 H 1.08992 * 109.46890 * 180.02562 * 20 18 17 49 49 H 1.08994 * 109.47188 * 300.00270 * 20 18 17 50 50 H 0.97001 * 120.00111 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6616 1.9662 0.8779 5 6 1.5675 2.1572 -1.2711 6 8 2.1985 3.4374 -1.3536 7 6 3.6228 3.3818 -1.4628 8 1 3.8982 2.7913 -2.3367 9 6 4.1800 4.7994 -1.6076 10 6 4.2007 2.7298 -0.2015 11 7 3.5115 1.4480 0.0158 12 6 4.2073 0.3124 0.2225 13 8 3.6274 -0.7518 0.2839 14 6 5.6930 0.3639 0.3763 15 8 6.2620 1.4349 0.4166 16 7 6.4008 -0.7792 0.4700 17 6 7.8570 -0.7288 0.6212 18 6 8.4110 -2.1527 0.7031 19 6 7.7977 -2.8699 1.9075 20 6 8.0571 -2.9120 -0.5771 21 6 9.9090 -2.1007 0.8581 22 1 10.4071 -1.1496 0.9756 23 6 10.6439 -3.2674 0.8499 24 7 11.9268 -3.2385 1.1373 25 14 9.8169 -4.8890 0.4306 26 1 9.9821 -5.1689 -1.0184 27 1 10.4405 -5.9813 1.2200 28 1 8.3705 -4.8061 0.7569 29 1 -0.3632 0.4329 -0.9320 30 1 -0.3633 -1.0236 0.0911 31 1 -0.3633 0.5907 0.8409 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 0.4857 2.2862 -1.2354 35 1 1.8353 1.5624 -2.1443 36 1 3.9042 5.3892 -0.7334 37 1 5.2660 4.7564 -1.6890 38 1 3.7665 5.2625 -2.5035 39 1 5.2682 2.5546 -0.3349 40 1 4.0398 3.3831 0.6562 41 1 5.9459 -1.6353 0.4381 42 1 8.2939 -0.2182 -0.2371 43 1 8.1092 -0.1874 1.5330 44 1 6.7121 -2.8782 1.8113 45 1 8.1669 -3.8947 1.9467 46 1 8.0774 -2.3476 2.8224 47 1 8.4939 -2.4010 -1.4351 48 1 8.4513 -3.9264 -0.5185 49 1 6.9736 -2.9495 -0.6896 50 1 12.4439 -4.0592 1.1312 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000422486292.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:22 Heat of formation + Delta-G solvation = -71.325369 kcal Electronic energy + Delta-G solvation = -29681.280958 eV Core-core repulsion = 25710.763418 eV Total energy + Delta-G solvation = -3970.517540 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.28743 -39.46618 -38.37141 -37.00764 -35.49443 -34.51623 -33.36312 -31.96028 -31.55425 -28.29404 -27.02001 -26.60054 -26.41194 -25.28683 -24.71322 -22.96189 -21.76621 -21.29640 -19.95904 -19.15557 -17.73603 -16.96237 -16.87786 -16.27990 -16.20976 -15.97232 -15.33998 -15.18648 -15.04213 -14.88526 -14.63674 -14.05693 -13.79818 -13.68879 -13.33217 -13.12974 -13.03527 -12.77278 -12.68675 -12.64508 -12.43321 -12.25390 -12.06601 -11.94469 -11.85034 -11.52098 -11.43685 -11.03664 -10.91454 -10.54866 -10.48461 -10.37931 -10.28778 -10.28096 -10.10267 -9.15570 -9.01033 -8.78418 -8.67634 -8.63194 -8.51286 -6.17971 -4.18670 1.44938 2.25405 3.21359 3.23554 3.26834 3.36135 3.38139 3.52179 4.31539 4.33034 4.44296 4.57192 4.68849 4.72662 4.81756 4.91614 5.08452 5.13661 5.18267 5.24697 5.32137 5.40683 5.46105 5.55134 5.60302 5.64141 5.77077 5.85522 5.90632 5.93002 5.96388 5.99866 6.01780 6.28479 6.34006 6.35720 6.43940 6.51790 6.59183 6.62467 6.85027 6.88179 6.91531 7.12147 7.35417 7.39487 7.64283 7.79067 8.14734 8.39237 8.84307 9.44165 10.94974 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.019519 B = 0.003069 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.173226 B = 9122.303296 C =10126.508611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.117 4.117 3 C 0.109 3.891 4 H 0.084 0.916 5 C 0.053 3.947 6 O -0.380 6.380 7 C 0.071 3.929 8 H 0.062 0.938 9 C -0.142 4.142 10 C 0.041 3.959 11 N -0.586 5.586 12 C 0.510 3.490 13 O -0.514 6.514 14 C 0.497 3.503 15 O -0.523 6.523 16 N -0.682 5.682 17 C 0.137 3.863 18 C 0.029 3.971 19 C -0.151 4.151 20 C -0.152 4.152 21 C -0.512 4.512 22 H 0.078 0.922 23 C 0.075 3.925 24 N -0.894 5.894 25 Si 0.879 3.121 26 H -0.287 1.287 27 H -0.303 1.303 28 H -0.237 1.237 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.107 0.893 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.154 0.846 40 H 0.076 0.924 41 H 0.410 0.590 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.024 0.976 45 H 0.059 0.941 46 H 0.051 0.949 47 H 0.054 0.946 48 H 0.045 0.955 49 H 0.031 0.969 50 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.343 10.410 -4.461 24.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.155 4.155 3 C 0.006 3.994 4 H 0.102 0.898 5 C -0.024 4.024 6 O -0.299 6.299 7 C 0.013 3.987 8 H 0.080 0.920 9 C -0.199 4.199 10 C -0.080 4.080 11 N -0.321 5.321 12 C 0.294 3.706 13 O -0.390 6.390 14 C 0.278 3.722 15 O -0.402 6.402 16 N -0.333 5.333 17 C 0.015 3.985 18 C 0.027 3.973 19 C -0.208 4.208 20 C -0.209 4.209 21 C -0.550 4.550 22 H 0.096 0.904 23 C -0.127 4.127 24 N -0.531 5.531 25 Si 0.712 3.288 26 H -0.214 1.214 27 H -0.232 1.232 28 H -0.164 1.164 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.114 0.886 34 H 0.125 0.875 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.171 0.829 40 H 0.094 0.906 41 H 0.247 0.753 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.043 0.957 45 H 0.078 0.922 46 H 0.070 0.930 47 H 0.073 0.927 48 H 0.063 0.937 49 H 0.050 0.950 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -21.127 10.646 -4.360 24.056 hybrid contribution -0.401 -1.524 -0.251 1.596 sum -21.528 9.121 -4.611 23.831 Atomic orbital electron populations 1.21961 0.96265 1.02142 1.01407 1.22089 0.94325 0.93410 1.05650 1.22208 0.78926 0.98887 0.99335 0.89839 1.23088 0.98295 0.84846 0.96199 1.87950 1.19539 1.28034 1.94380 1.22592 0.80982 0.98151 0.96958 0.92035 1.21710 1.01181 0.93994 1.03060 1.23673 1.02749 0.83533 0.98050 1.48027 1.06352 1.08324 1.69361 1.20364 0.88578 0.83960 0.77747 1.90775 1.69717 1.29337 1.49162 1.20085 0.87688 0.85284 0.79159 1.90446 1.71299 1.28071 1.50419 1.46250 1.09953 1.08247 1.68889 1.21748 0.74956 0.99867 1.01892 1.18738 0.97106 0.89681 0.91743 1.22410 0.97060 1.01689 0.99667 1.22414 0.98164 1.00378 0.99896 1.20710 0.87862 0.95252 1.51190 0.90418 1.24975 0.94670 0.98918 0.94160 1.69904 1.07150 1.28344 1.47683 0.87430 0.80327 0.83253 0.77823 1.21440 1.23218 1.16359 0.92951 0.92159 0.92757 0.90752 0.88643 0.87536 0.92596 0.91535 0.90319 0.91557 0.82914 0.90560 0.75301 0.91107 0.91094 0.95709 0.92200 0.93008 0.92691 0.93667 0.95006 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 9.47 37.16 0.35 -0.87 16 2 C -0.12 -1.21 3.88 -26.73 -0.10 -1.31 16 3 C 0.11 1.12 3.19 -67.42 -0.21 0.91 16 4 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 5 C 0.05 0.49 5.74 37.31 0.21 0.70 16 6 O -0.38 -4.05 10.38 -35.23 -0.37 -4.41 16 7 C 0.07 0.72 3.40 -26.58 -0.09 0.63 16 8 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 9 C -0.14 -1.15 9.57 37.16 0.36 -0.79 16 10 C 0.04 0.47 5.48 -3.54 -0.02 0.45 16 11 N -0.59 -7.18 3.02 -165.25 -0.50 -7.68 16 12 C 0.51 7.26 7.69 -11.59 -0.09 7.17 16 13 O -0.51 -7.72 12.04 5.50 0.07 -7.66 16 14 C 0.50 7.81 7.77 -11.59 -0.09 7.72 16 15 O -0.52 -8.79 13.14 5.50 0.07 -8.72 16 16 N -0.68 -11.12 4.94 -60.73 -0.30 -11.42 16 17 C 0.14 2.58 4.50 -4.04 -0.02 2.56 16 18 C 0.03 0.60 0.50 -155.66 -0.08 0.52 16 19 C -0.15 -3.02 7.87 37.16 0.29 -2.73 16 20 C -0.15 -3.03 7.44 37.16 0.28 -2.75 16 21 C -0.51 -13.35 8.62 -34.44 -0.30 -13.65 16 22 H 0.08 2.21 7.99 -52.48 -0.42 1.79 16 23 C 0.08 2.06 5.41 -17.82 -0.10 1.96 16 24 N -0.89 -26.36 13.96 55.43 0.77 -25.58 16 25 Si 0.88 20.61 23.04 -169.99 -3.92 16.69 16 26 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 27 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 28 H -0.24 -5.03 4.14 56.52 0.23 -4.80 16 29 H 0.05 0.34 6.95 -51.93 -0.36 -0.02 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.87 7.29 -51.93 -0.38 0.49 16 33 H 0.10 1.18 6.25 -51.93 -0.32 0.86 16 34 H 0.11 0.76 7.06 -51.93 -0.37 0.39 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.15 1.98 4.36 -54.70 -0.24 1.74 16 40 H 0.08 0.84 8.14 -51.92 -0.42 0.42 16 41 H 0.41 6.42 5.64 -40.82 -0.23 6.19 16 42 H 0.07 1.37 8.14 -51.92 -0.42 0.94 16 43 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 44 H 0.02 0.42 6.81 -51.93 -0.35 0.07 16 45 H 0.06 1.25 4.04 -51.93 -0.21 1.04 16 46 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 48 H 0.05 0.96 2.10 -51.93 -0.11 0.85 16 49 H 0.03 0.54 6.86 -51.93 -0.36 0.18 16 50 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 368.94 15.07 5.56 5.56 Total: -1.00 -29.17 368.94 -6.36 -35.53 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -8.15 Total: 7.15 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: 0.39 Total: 0.53 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: -0.03 Total: -44.69 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.23 Total: -20.79 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -3.92 Total: 16.69 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.17 -6.36 -35.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422486292.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.791 kcal (2) G-P(sol) polarization free energy of solvation -29.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds