Wall clock time and date at job start Tue Mar 31 2020 15:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47056 * 2 1 4 4 H 1.09002 * 109.70876 * 58.81654 * 3 2 1 5 5 C 1.53287 * 109.68368 * 298.27679 * 3 2 1 6 6 O 1.42966 * 109.22426 * 187.97398 * 5 3 2 7 7 C 1.42958 * 114.16845 * 62.58119 * 6 5 3 8 8 H 1.09004 * 109.51057 * 57.34129 * 7 6 5 9 9 C 1.52997 * 109.51536 * 177.44737 * 7 6 5 10 10 C 1.53297 * 109.22173 * 297.42352 * 7 6 5 11 11 N 1.47145 * 108.38827 * 52.29804 * 10 7 6 12 12 C 1.34776 * 120.98247 * 129.44281 * 11 10 7 13 13 O 1.21348 * 119.99755 * 186.39814 * 12 11 10 14 14 C 1.49446 * 119.99939 * 6.40036 * 12 11 10 15 15 O 1.21350 * 120.00071 * 5.58870 * 14 12 11 16 16 N 1.34778 * 120.00161 * 185.59381 * 14 12 11 17 17 C 1.46494 * 120.00300 * 180.02562 * 16 14 12 18 18 C 1.53004 * 109.47245 * 180.02562 * 17 16 14 19 19 C 1.53005 * 109.46592 * 299.99494 * 18 17 16 20 20 C 1.52997 * 109.47307 * 59.99502 * 18 17 16 21 21 C 1.50697 * 109.46981 * 179.97438 * 18 17 16 22 22 H 1.08004 * 120.00004 * 4.99700 * 21 18 17 23 23 C 1.37881 * 120.00124 * 184.99237 * 21 18 17 24 24 N 1.31510 * 120.00361 * 187.80496 * 23 21 18 25 25 Si 1.86800 * 119.99718 * 7.80297 * 23 21 18 26 26 H 1.48502 * 109.47320 * 94.06248 * 25 23 21 27 27 H 1.48493 * 109.47126 * 214.06778 * 25 23 21 28 28 H 1.48508 * 109.47232 * 334.06558 * 25 23 21 29 29 H 1.08997 * 109.46617 * 65.08475 * 1 2 3 30 30 H 1.09002 * 109.47009 * 185.08338 * 1 2 3 31 31 H 1.08991 * 109.46889 * 305.08484 * 1 2 3 32 32 H 1.08998 * 109.47613 * 240.00190 * 2 1 3 33 33 H 1.09002 * 109.47555 * 120.00320 * 2 1 3 34 34 H 1.09003 * 109.51318 * 68.05327 * 5 3 2 35 35 H 1.09000 * 109.51894 * 307.89655 * 5 3 2 36 36 H 1.09003 * 109.47249 * 59.89301 * 9 7 6 37 37 H 1.08995 * 109.47271 * 179.89856 * 9 7 6 38 38 H 1.09007 * 109.46648 * 299.89902 * 9 7 6 39 39 H 1.09000 * 109.68508 * 172.02764 * 10 7 6 40 40 H 1.09008 * 109.67891 * 292.57562 * 10 7 6 41 41 H 0.97000 * 119.99745 * 359.97438 * 16 14 12 42 42 H 1.09010 * 109.46602 * 299.99462 * 17 16 14 43 43 H 1.09000 * 109.47753 * 59.99255 * 17 16 14 44 44 H 1.08992 * 109.46938 * 58.13605 * 19 18 17 45 45 H 1.09000 * 109.46532 * 178.13410 * 19 18 17 46 46 H 1.08996 * 109.46734 * 298.13253 * 19 18 17 47 47 H 1.08996 * 109.47376 * 59.99976 * 20 18 17 48 48 H 1.08992 * 109.46890 * 180.02562 * 20 18 17 49 49 H 1.08994 * 109.47188 * 300.00270 * 20 18 17 50 50 H 0.97001 * 120.00111 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6616 1.9662 0.8779 5 6 1.5675 2.1572 -1.2711 6 8 2.1985 3.4374 -1.3536 7 6 3.6228 3.3818 -1.4628 8 1 3.8982 2.7913 -2.3367 9 6 4.1800 4.7994 -1.6076 10 6 4.2007 2.7298 -0.2015 11 7 3.5115 1.4480 0.0158 12 6 4.2073 0.3124 0.2225 13 8 3.6274 -0.7518 0.2839 14 6 5.6930 0.3639 0.3763 15 8 6.2620 1.4349 0.4166 16 7 6.4008 -0.7792 0.4700 17 6 7.8570 -0.7288 0.6212 18 6 8.4110 -2.1527 0.7031 19 6 7.7977 -2.8699 1.9075 20 6 8.0571 -2.9120 -0.5771 21 6 9.9090 -2.1007 0.8581 22 1 10.4071 -1.1496 0.9756 23 6 10.6439 -3.2674 0.8499 24 7 11.9268 -3.2385 1.1373 25 14 9.8169 -4.8890 0.4306 26 1 9.9821 -5.1689 -1.0184 27 1 10.4405 -5.9813 1.2200 28 1 8.3705 -4.8061 0.7569 29 1 -0.3632 0.4329 -0.9320 30 1 -0.3633 -1.0236 0.0911 31 1 -0.3633 0.5907 0.8409 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 0.4857 2.2862 -1.2354 35 1 1.8353 1.5624 -2.1443 36 1 3.9042 5.3892 -0.7334 37 1 5.2660 4.7564 -1.6890 38 1 3.7665 5.2625 -2.5035 39 1 5.2682 2.5546 -0.3349 40 1 4.0398 3.3831 0.6562 41 1 5.9459 -1.6353 0.4381 42 1 8.2939 -0.2182 -0.2371 43 1 8.1092 -0.1874 1.5330 44 1 6.7121 -2.8782 1.8113 45 1 8.1669 -3.8947 1.9467 46 1 8.0774 -2.3476 2.8224 47 1 8.4939 -2.4010 -1.4351 48 1 8.4513 -3.9264 -0.5185 49 1 6.9736 -2.9495 -0.6896 50 1 12.4439 -4.0592 1.1312 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422486292.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:21 Heat of formation + Delta-G solvation = -91.955340 kcal Electronic energy + Delta-G solvation = -29682.175541 eV Core-core repulsion = 25710.763418 eV Total energy + Delta-G solvation = -3971.412122 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.35046 -40.59982 -39.42084 -38.57684 -36.41737 -35.50000 -34.84124 -33.45573 -32.70788 -29.15274 -28.26914 -28.01895 -27.54697 -27.06688 -25.88798 -23.99868 -22.60906 -22.23913 -21.24935 -20.71780 -18.93574 -18.10883 -17.87784 -17.77207 -17.36341 -17.31165 -16.80488 -16.24264 -16.20088 -15.94599 -15.62017 -15.31004 -15.04209 -14.82775 -14.59405 -14.42940 -14.27490 -14.21801 -13.99476 -13.75771 -13.50257 -13.34246 -13.17772 -13.02725 -12.71886 -12.67446 -12.39556 -12.22600 -12.16928 -12.04163 -11.79141 -11.78091 -11.71452 -11.46750 -11.21976 -11.02417 -10.70266 -10.28539 -10.23131 -10.01517 -9.62324 -8.29451 -6.33697 0.26755 1.16684 1.36137 1.37307 1.49043 2.04479 2.32422 2.34271 2.69326 3.07802 3.23096 3.56641 3.75676 3.87678 3.95478 4.00665 4.01907 4.16985 4.28273 4.37002 4.39551 4.44989 4.51556 4.60356 4.67936 4.70081 4.76381 4.76531 4.80403 4.83074 4.89686 4.89925 4.98362 5.02411 5.07942 5.16211 5.24066 5.26344 5.28537 5.35618 5.46714 5.54358 5.68043 5.74222 5.87043 6.10058 6.16433 6.29227 6.63930 6.72531 6.90418 7.32846 8.87327 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.019519 B = 0.003069 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.173226 B = 9122.303296 C =10126.508611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.110 4.110 3 C 0.106 3.894 4 H 0.092 0.908 5 C 0.055 3.945 6 O -0.387 6.387 7 C 0.074 3.926 8 H 0.059 0.941 9 C -0.139 4.139 10 C 0.042 3.958 11 N -0.583 5.583 12 C 0.512 3.488 13 O -0.523 6.523 14 C 0.497 3.503 15 O -0.536 6.536 16 N -0.679 5.679 17 C 0.152 3.848 18 C 0.027 3.973 19 C -0.149 4.149 20 C -0.151 4.151 21 C -0.511 4.511 22 H 0.036 0.964 23 C 0.018 3.982 24 N -0.948 5.948 25 Si 0.932 3.068 26 H -0.285 1.285 27 H -0.315 1.315 28 H -0.193 1.193 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.133 0.867 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.139 0.861 40 H 0.081 0.919 41 H 0.416 0.584 42 H 0.061 0.939 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.053 0.947 46 H 0.043 0.957 47 H 0.051 0.949 48 H 0.037 0.963 49 H 0.067 0.933 50 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.084 10.435 -5.225 27.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.148 4.148 3 C 0.005 3.995 4 H 0.110 0.890 5 C -0.023 4.023 6 O -0.306 6.306 7 C 0.015 3.985 8 H 0.077 0.923 9 C -0.196 4.196 10 C -0.079 4.079 11 N -0.316 5.316 12 C 0.295 3.705 13 O -0.400 6.400 14 C 0.279 3.721 15 O -0.416 6.416 16 N -0.331 5.331 17 C 0.030 3.970 18 C 0.025 3.975 19 C -0.206 4.206 20 C -0.208 4.208 21 C -0.549 4.549 22 H 0.054 0.946 23 C -0.180 4.180 24 N -0.588 5.588 25 Si 0.763 3.237 26 H -0.213 1.213 27 H -0.245 1.245 28 H -0.118 1.118 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.150 0.850 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.156 0.844 40 H 0.099 0.901 41 H 0.254 0.746 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.071 0.929 46 H 0.063 0.937 47 H 0.070 0.930 48 H 0.055 0.945 49 H 0.085 0.915 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -24.927 10.708 -5.133 27.611 hybrid contribution 0.769 -1.359 0.007 1.562 sum -24.158 9.349 -5.126 26.406 Atomic orbital electron populations 1.21914 0.93989 1.02616 1.02682 1.21927 0.96210 0.92850 1.03778 1.22419 0.77385 0.99249 1.00488 0.88970 1.23210 0.99583 0.84173 0.95299 1.87953 1.19589 1.28812 1.94284 1.22603 0.80947 0.99053 0.95857 0.92346 1.21715 1.01480 0.92849 1.03601 1.23640 1.01946 0.83266 0.99091 1.48139 1.07397 1.07937 1.68151 1.20010 0.87619 0.84530 0.78356 1.90791 1.69483 1.29723 1.49978 1.20445 0.88579 0.84728 0.78366 1.90471 1.71972 1.28550 1.50561 1.46014 1.08647 1.08907 1.69522 1.21309 0.76628 0.98199 1.00905 1.18676 0.93895 0.91528 0.93361 1.22325 0.99080 1.00682 0.98503 1.22355 1.00494 0.99287 0.98656 1.21014 0.90860 0.93434 1.49590 0.94610 1.25813 0.95049 1.02872 0.94234 1.70064 1.09192 1.29286 1.50260 0.86578 0.81809 0.78079 0.77265 1.21289 1.24456 1.11753 0.91385 0.92119 0.91781 0.92258 0.90827 0.84960 0.92713 0.91231 0.89817 0.90728 0.84430 0.90096 0.74595 0.92059 0.92440 0.92341 0.92857 0.93736 0.92969 0.94450 0.91464 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.47 71.98 0.68 -1.23 16 2 C -0.11 -2.04 3.88 30.59 0.12 -1.92 16 3 C 0.11 1.94 3.19 44.96 0.14 2.08 16 4 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 5 C 0.05 0.84 5.74 72.08 0.41 1.25 16 6 O -0.39 -7.26 10.38 -148.98 -1.55 -8.81 16 7 C 0.07 1.35 3.40 30.69 0.10 1.45 16 8 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 9 C -0.14 -2.00 9.57 71.98 0.69 -1.31 16 10 C 0.04 0.90 5.48 86.36 0.47 1.37 16 11 N -0.58 -13.34 3.02 -795.10 -2.40 -15.74 16 12 C 0.51 13.85 7.69 87.27 0.67 14.52 16 13 O -0.52 -14.83 12.04 -3.24 -0.04 -14.87 16 14 C 0.50 15.09 7.77 87.27 0.68 15.77 16 15 O -0.54 -17.77 13.14 -3.25 -0.04 -17.81 16 16 N -0.68 -21.05 4.94 -464.41 -2.29 -23.34 16 17 C 0.15 5.68 4.50 86.38 0.39 6.07 16 18 C 0.03 1.09 0.50 -52.93 -0.03 1.07 16 19 C -0.15 -5.61 7.87 71.98 0.57 -5.04 16 20 C -0.15 -5.64 7.44 71.98 0.54 -5.10 16 21 C -0.51 -27.28 8.62 25.60 0.22 -27.06 16 22 H 0.04 2.15 7.99 -2.91 -0.02 2.13 16 23 C 0.02 0.98 5.41 84.66 0.46 1.44 16 24 N -0.95 -58.12 13.96 21.45 0.30 -57.82 16 25 Si 0.93 42.05 23.04 68.60 1.58 43.63 16 26 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 27 H -0.31 -14.73 7.11 99.48 0.71 -14.02 16 28 H -0.19 -7.39 4.14 99.48 0.41 -6.97 16 29 H 0.07 0.64 6.95 -2.39 -0.02 0.63 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 1.28 7.29 -2.39 -0.02 1.26 16 33 H 0.07 1.71 6.25 -2.39 -0.01 1.70 16 34 H 0.13 1.36 7.06 -2.39 -0.02 1.35 16 35 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 39 H 0.14 3.46 4.36 -46.24 -0.20 3.26 16 40 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 41 H 0.42 11.85 5.64 -92.71 -0.52 11.33 16 42 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 43 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 44 H 0.06 1.81 6.81 -2.39 -0.02 1.80 16 45 H 0.05 2.07 4.04 -2.39 -0.01 2.06 16 46 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 47 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 48 H 0.04 1.46 2.10 -2.39 -0.01 1.45 16 49 H 0.07 2.03 6.86 -2.39 -0.02 2.02 16 50 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -64.77 368.94 1.62 -63.15 By element: Atomic # 1 Polarization: 28.31 SS G_CDS: -0.06 Total: 28.25 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: 6.12 Total: 3.36 kcal Atomic # 7 Polarization: -92.51 SS G_CDS: -4.39 Total: -96.90 kcal Atomic # 8 Polarization: -39.86 SS G_CDS: -1.63 Total: -41.49 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 1.58 Total: 43.63 kcal Total: -64.77 1.62 -63.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422486292.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.803 kcal (2) G-P(sol) polarization free energy of solvation -64.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds