Wall clock time and date at job start Tue Mar 31 2020 15:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47360 * 2 1 4 4 H 1.09004 * 109.70849 * 55.53600 * 3 2 1 5 5 C 1.53296 * 109.68129 * 176.07003 * 3 2 1 6 6 O 1.42961 * 109.21926 * 67.42374 * 5 3 2 7 7 C 1.42968 * 114.16571 * 62.58049 * 6 5 3 8 8 H 1.08998 * 109.51566 * 57.39271 * 7 6 5 9 9 C 1.53002 * 109.50935 * 177.49322 * 7 6 5 10 10 C 1.53707 * 109.14907 * 297.28442 * 7 6 5 11 11 N 1.47153 * 108.16127 * 52.53840 * 10 7 6 12 12 C 1.34776 * 120.98344 * 129.42974 * 11 10 7 13 13 O 1.21348 * 119.99875 * 178.03475 * 12 11 10 14 14 C 1.49444 * 119.99767 * 358.31486 * 12 11 10 15 15 O 1.21344 * 120.00110 * 6.14411 * 14 12 11 16 16 N 1.34778 * 119.99711 * 186.14833 * 14 12 11 17 17 C 1.46505 * 119.99734 * 179.97438 * 16 14 12 18 18 C 1.53000 * 109.47154 * 179.97438 * 17 16 14 19 19 C 1.53003 * 109.46927 * 300.00189 * 18 17 16 20 20 C 1.52999 * 109.47059 * 59.99813 * 18 17 16 21 21 C 1.50701 * 109.47272 * 179.97438 * 18 17 16 22 22 H 1.08001 * 119.99566 * 0.02562 * 21 18 17 23 23 C 1.37877 * 120.00054 * 179.97438 * 21 18 17 24 24 N 1.31523 * 119.99689 * 0.02562 * 23 21 18 25 25 Si 1.86799 * 120.00172 * 180.02562 * 23 21 18 26 26 H 1.48497 * 109.47085 * 89.99742 * 25 23 21 27 27 H 1.48493 * 109.47088 * 210.00418 * 25 23 21 28 28 H 1.48504 * 109.46732 * 330.00132 * 25 23 21 29 29 H 1.09004 * 109.47346 * 299.99958 * 1 2 3 30 30 H 1.09005 * 109.47127 * 59.99641 * 1 2 3 31 31 H 1.09002 * 109.47340 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47346 * 240.00042 * 2 1 3 33 33 H 1.09005 * 109.47127 * 120.00359 * 2 1 3 34 34 H 1.09003 * 109.50953 * 187.34182 * 5 3 2 35 35 H 1.08998 * 109.51596 * 307.45054 * 5 3 2 36 36 H 1.08999 * 109.47232 * 60.00346 * 9 7 6 37 37 H 1.09008 * 109.47044 * 180.02562 * 9 7 6 38 38 H 1.09005 * 109.47571 * 299.99692 * 9 7 6 39 39 H 1.09002 * 109.83938 * 292.86311 * 10 7 6 40 40 H 1.08995 * 109.74724 * 172.16528 * 10 7 6 41 41 H 0.97001 * 120.00213 * 359.97438 * 16 14 12 42 42 H 1.09000 * 109.46939 * 299.99752 * 17 16 14 43 43 H 1.09001 * 109.47366 * 60.00084 * 17 16 14 44 44 H 1.08994 * 109.47335 * 59.99776 * 19 18 17 45 45 H 1.09002 * 109.46915 * 180.02562 * 19 18 17 46 46 H 1.09001 * 109.47109 * 299.99501 * 19 18 17 47 47 H 1.09000 * 109.47199 * 60.00029 * 20 18 17 48 48 H 1.09002 * 109.47048 * 179.97438 * 20 18 17 49 49 H 1.08998 * 109.47359 * 299.99730 * 20 18 17 50 50 H 0.96996 * 119.99269 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6151 1.9826 0.8461 5 6 3.5698 1.4491 0.0989 6 8 4.1214 0.9046 -1.1023 7 6 3.8189 1.6578 -2.2792 8 1 4.1725 2.6816 -2.1572 9 6 4.5092 1.0191 -3.4861 10 6 2.2979 1.6579 -2.5007 11 7 1.6531 2.1049 -1.2557 12 6 0.7315 3.0882 -1.2660 13 8 0.1851 3.4185 -0.2341 14 6 0.3780 3.7676 -2.5494 15 8 0.8359 3.3614 -3.5971 16 7 -0.4493 4.8315 -2.5429 17 6 -0.7954 5.4979 -3.8009 18 6 -1.7421 6.6656 -3.5160 19 6 -3.0153 6.1391 -2.8505 20 6 -1.0541 7.6637 -2.5825 21 6 -2.0976 7.3514 -4.8099 22 1 -1.6894 6.9902 -5.7423 23 6 -2.9447 8.4392 -4.8035 24 7 -3.4420 8.8786 -3.6680 25 14 -3.3859 9.2889 -6.4075 26 1 -4.6015 8.6594 -6.9830 27 1 -3.6482 10.7276 -6.1496 28 1 -2.2586 9.1551 -7.3649 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.9216 2.4725 0.2299 35 1 3.8822 0.8448 0.9505 36 1 4.1538 -0.0040 -3.6086 37 1 4.2786 1.5942 -4.3830 38 1 5.5875 1.0126 -3.3266 39 1 1.9600 0.6515 -2.7482 40 1 2.0438 2.3408 -3.3113 41 1 -0.8156 5.1561 -1.7054 42 1 0.1117 5.8725 -4.2752 43 1 -1.2859 4.7869 -4.4658 44 1 -2.7578 5.6433 -1.9146 45 1 -3.6899 6.9709 -2.6479 46 1 -3.5054 5.4280 -3.5155 47 1 -0.1471 8.0387 -3.0565 48 1 -1.7284 8.4958 -2.3799 49 1 -0.7967 7.1680 -1.6466 50 1 -4.0377 9.6442 -3.6635 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000422486293.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:27 Heat of formation + Delta-G solvation = -107.672895 kcal Electronic energy + Delta-G solvation = -29686.452303 eV Core-core repulsion = 25714.358616 eV Total energy + Delta-G solvation = -3972.093687 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.11036 -39.40702 -38.13541 -36.65395 -35.53853 -34.06884 -33.27004 -31.82965 -30.95475 -28.82089 -26.78289 -26.17887 -25.76895 -25.31534 -24.26167 -23.21303 -22.19698 -20.57355 -19.53734 -18.83330 -17.78510 -17.25607 -16.64392 -16.17533 -16.06119 -15.64769 -15.25091 -15.01160 -14.82040 -14.64315 -14.49732 -14.14435 -13.63672 -13.60992 -13.07004 -12.97793 -12.79710 -12.59406 -12.43075 -12.29044 -12.23251 -11.98286 -11.71912 -11.45503 -11.27557 -11.24433 -11.15899 -11.07187 -10.91992 -10.73948 -10.61306 -10.44691 -10.30272 -10.23023 -9.70404 -9.46957 -8.97485 -8.83297 -8.75208 -8.65808 -8.41255 -6.06289 -4.17369 1.55451 2.35478 3.25649 3.33021 3.34126 3.35849 3.46433 3.64381 4.34492 4.39583 4.51524 4.60484 4.75791 4.81399 4.91120 4.99922 5.19086 5.20344 5.20485 5.30557 5.40597 5.45188 5.55166 5.63873 5.70296 5.77387 5.83935 5.93419 5.97663 6.04033 6.14341 6.16718 6.20219 6.41428 6.63356 6.80138 6.80640 6.88253 6.94161 6.95366 7.02414 7.28380 7.50423 7.52683 7.65488 7.89186 7.95709 8.07629 8.25090 8.35019 8.82833 9.48836 10.95129 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.021489 B = 0.002857 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.660728 B = 9799.135578 C =10461.529006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.100 3.900 4 H 0.108 0.892 5 C 0.057 3.943 6 O -0.378 6.378 7 C 0.073 3.927 8 H 0.062 0.938 9 C -0.141 4.141 10 C 0.025 3.975 11 N -0.581 5.581 12 C 0.510 3.490 13 O -0.520 6.520 14 C 0.499 3.501 15 O -0.525 6.525 16 N -0.674 5.674 17 C 0.126 3.874 18 C 0.056 3.944 19 C -0.134 4.134 20 C -0.133 4.133 21 C -0.508 4.508 22 H 0.059 0.941 23 C 0.067 3.933 24 N -0.884 5.884 25 Si 0.895 3.105 26 H -0.281 1.281 27 H -0.287 1.287 28 H -0.274 1.274 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.055 0.945 35 H 0.106 0.894 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.167 0.833 41 H 0.412 0.588 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.008 0.992 45 H 0.087 0.913 46 H 0.028 0.972 47 H 0.028 0.972 48 H 0.087 0.913 49 H 0.008 0.992 50 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.506 -15.360 6.675 20.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.003 4.003 4 H 0.126 0.874 5 C -0.021 4.021 6 O -0.297 6.297 7 C 0.015 3.985 8 H 0.080 0.920 9 C -0.199 4.199 10 C -0.096 4.096 11 N -0.315 5.315 12 C 0.293 3.707 13 O -0.395 6.395 14 C 0.280 3.720 15 O -0.406 6.406 16 N -0.325 5.325 17 C 0.005 3.995 18 C 0.055 3.945 19 C -0.192 4.192 20 C -0.191 4.191 21 C -0.547 4.547 22 H 0.077 0.923 23 C -0.135 4.135 24 N -0.522 5.522 25 Si 0.723 3.277 26 H -0.207 1.207 27 H -0.212 1.212 28 H -0.199 1.199 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.124 0.876 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.183 0.817 41 H 0.250 0.750 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.027 0.973 45 H 0.106 0.894 46 H 0.047 0.953 47 H 0.047 0.953 48 H 0.106 0.894 49 H 0.026 0.974 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 12.476 -15.428 6.550 20.895 hybrid contribution -0.601 0.753 -0.336 1.020 sum 11.875 -14.675 6.214 19.874 Atomic orbital electron populations 1.21718 0.95231 1.01385 1.02318 1.21750 0.96536 0.95078 1.02954 1.22086 0.95688 0.94511 0.88019 0.87377 1.22942 0.91297 0.99590 0.88255 1.87931 1.74764 1.52087 1.14929 1.22633 0.94235 0.95416 0.86189 0.92031 1.21704 1.00764 1.01666 0.95756 1.24061 0.91903 1.04540 0.89059 1.48022 1.39682 1.34792 1.09045 1.20348 0.80083 0.80501 0.89792 1.90744 1.51155 1.63806 1.33817 1.19998 0.81046 0.82183 0.88797 1.90268 1.52920 1.64307 1.33087 1.46275 1.44288 1.28293 1.13605 1.21998 0.99565 0.95302 0.82669 1.18383 0.90625 0.89564 0.95890 1.21861 1.00548 1.00666 0.96087 1.21858 0.99827 1.01757 0.95677 1.20939 1.28398 1.13326 0.92022 0.92321 1.24886 0.95581 0.96712 0.96297 1.69809 1.32214 1.25418 1.24784 0.86549 0.78833 0.78667 0.83693 1.20684 1.21248 1.19876 0.92434 0.92971 0.92699 0.91027 0.90731 0.92651 0.87637 0.91685 0.90388 0.91682 0.90910 0.81727 0.75047 0.91812 0.91817 0.97287 0.89399 0.95330 0.95327 0.89396 0.97351 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.80 37.16 0.36 -1.21 16 2 C -0.12 -1.18 5.34 -26.73 -0.14 -1.33 16 3 C 0.10 1.07 2.61 -67.42 -0.18 0.90 16 4 H 0.11 1.23 7.09 -51.93 -0.37 0.87 16 5 C 0.06 0.53 6.36 37.31 0.24 0.76 16 6 O -0.38 -4.04 10.10 -35.23 -0.36 -4.40 16 7 C 0.07 0.77 3.41 -26.36 -0.09 0.68 16 8 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 9 C -0.14 -1.20 9.57 37.16 0.36 -0.84 16 10 C 0.03 0.30 5.30 -3.32 -0.02 0.28 16 11 N -0.58 -7.46 2.21 -165.00 -0.36 -7.82 16 12 C 0.51 7.90 7.48 -11.59 -0.09 7.81 16 13 O -0.52 -8.90 15.97 5.50 0.09 -8.81 16 14 C 0.50 8.45 7.81 -11.59 -0.09 8.36 16 15 O -0.53 -9.20 13.04 5.50 0.07 -9.13 16 16 N -0.67 -12.10 4.95 -60.73 -0.30 -12.40 16 17 C 0.13 2.54 4.50 -4.04 -0.02 2.52 16 18 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 19 C -0.13 -3.02 8.08 37.16 0.30 -2.72 16 20 C -0.13 -2.99 8.08 37.16 0.30 -2.69 16 21 C -0.51 -12.93 8.01 -34.44 -0.28 -13.21 16 22 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 23 C 0.07 1.73 5.15 -17.82 -0.09 1.63 16 24 N -0.88 -23.29 9.35 55.43 0.52 -22.77 16 25 Si 0.89 20.32 29.54 -169.99 -5.02 15.29 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 27 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 28 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.66 7.49 -51.93 -0.39 0.27 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.72 7.12 -51.93 -0.37 0.35 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.83 7.52 -51.93 -0.39 0.44 16 40 H 0.17 2.25 3.95 -56.41 -0.22 2.03 16 41 H 0.41 7.37 5.65 -40.82 -0.23 7.14 16 42 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.01 0.17 6.86 -51.93 -0.36 -0.19 16 45 H 0.09 2.19 6.07 -51.93 -0.32 1.87 16 46 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.09 2.18 6.07 -51.93 -0.32 1.87 16 49 H 0.01 0.15 6.86 -51.93 -0.36 -0.20 16 50 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 LS Contribution 385.06 15.07 5.80 5.80 Total: -1.00 -27.10 385.06 -7.42 -34.52 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -8.35 Total: 7.57 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: 0.49 Total: 2.15 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: -0.15 Total: -43.00 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -0.20 Total: -22.34 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -27.10 -7.42 -34.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422486293.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.154 kcal (2) G-P(sol) polarization free energy of solvation -27.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds