Wall clock time and date at job start Tue Mar 31 2020 15:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47360 * 2 1 4 4 H 1.09004 * 109.70849 * 55.53600 * 3 2 1 5 5 C 1.53296 * 109.68129 * 176.07003 * 3 2 1 6 6 O 1.42961 * 109.21926 * 67.42374 * 5 3 2 7 7 C 1.42968 * 114.16571 * 62.58049 * 6 5 3 8 8 H 1.08998 * 109.51566 * 57.39271 * 7 6 5 9 9 C 1.53002 * 109.50935 * 177.49322 * 7 6 5 10 10 C 1.53707 * 109.14907 * 297.28442 * 7 6 5 11 11 N 1.47153 * 108.16127 * 52.53840 * 10 7 6 12 12 C 1.34776 * 120.98344 * 129.42974 * 11 10 7 13 13 O 1.21348 * 119.99875 * 178.03475 * 12 11 10 14 14 C 1.49444 * 119.99767 * 358.31486 * 12 11 10 15 15 O 1.21344 * 120.00110 * 6.14411 * 14 12 11 16 16 N 1.34778 * 119.99711 * 186.14833 * 14 12 11 17 17 C 1.46505 * 119.99734 * 179.97438 * 16 14 12 18 18 C 1.53000 * 109.47154 * 179.97438 * 17 16 14 19 19 C 1.53003 * 109.46927 * 300.00189 * 18 17 16 20 20 C 1.52999 * 109.47059 * 59.99813 * 18 17 16 21 21 C 1.50701 * 109.47272 * 179.97438 * 18 17 16 22 22 H 1.08001 * 119.99566 * 0.02562 * 21 18 17 23 23 C 1.37877 * 120.00054 * 179.97438 * 21 18 17 24 24 N 1.31523 * 119.99689 * 0.02562 * 23 21 18 25 25 Si 1.86799 * 120.00172 * 180.02562 * 23 21 18 26 26 H 1.48497 * 109.47085 * 89.99742 * 25 23 21 27 27 H 1.48493 * 109.47088 * 210.00418 * 25 23 21 28 28 H 1.48504 * 109.46732 * 330.00132 * 25 23 21 29 29 H 1.09004 * 109.47346 * 299.99958 * 1 2 3 30 30 H 1.09005 * 109.47127 * 59.99641 * 1 2 3 31 31 H 1.09002 * 109.47340 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47346 * 240.00042 * 2 1 3 33 33 H 1.09005 * 109.47127 * 120.00359 * 2 1 3 34 34 H 1.09003 * 109.50953 * 187.34182 * 5 3 2 35 35 H 1.08998 * 109.51596 * 307.45054 * 5 3 2 36 36 H 1.08999 * 109.47232 * 60.00346 * 9 7 6 37 37 H 1.09008 * 109.47044 * 180.02562 * 9 7 6 38 38 H 1.09005 * 109.47571 * 299.99692 * 9 7 6 39 39 H 1.09002 * 109.83938 * 292.86311 * 10 7 6 40 40 H 1.08995 * 109.74724 * 172.16528 * 10 7 6 41 41 H 0.97001 * 120.00213 * 359.97438 * 16 14 12 42 42 H 1.09000 * 109.46939 * 299.99752 * 17 16 14 43 43 H 1.09001 * 109.47366 * 60.00084 * 17 16 14 44 44 H 1.08994 * 109.47335 * 59.99776 * 19 18 17 45 45 H 1.09002 * 109.46915 * 180.02562 * 19 18 17 46 46 H 1.09001 * 109.47109 * 299.99501 * 19 18 17 47 47 H 1.09000 * 109.47199 * 60.00029 * 20 18 17 48 48 H 1.09002 * 109.47048 * 179.97438 * 20 18 17 49 49 H 1.08998 * 109.47359 * 299.99730 * 20 18 17 50 50 H 0.96996 * 119.99269 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6151 1.9826 0.8461 5 6 3.5698 1.4491 0.0989 6 8 4.1214 0.9046 -1.1023 7 6 3.8189 1.6578 -2.2792 8 1 4.1725 2.6816 -2.1572 9 6 4.5092 1.0191 -3.4861 10 6 2.2979 1.6579 -2.5007 11 7 1.6531 2.1049 -1.2557 12 6 0.7315 3.0882 -1.2660 13 8 0.1851 3.4185 -0.2341 14 6 0.3780 3.7676 -2.5494 15 8 0.8359 3.3614 -3.5971 16 7 -0.4493 4.8315 -2.5429 17 6 -0.7954 5.4979 -3.8009 18 6 -1.7421 6.6656 -3.5160 19 6 -3.0153 6.1391 -2.8505 20 6 -1.0541 7.6637 -2.5825 21 6 -2.0976 7.3514 -4.8099 22 1 -1.6894 6.9902 -5.7423 23 6 -2.9447 8.4392 -4.8035 24 7 -3.4420 8.8786 -3.6680 25 14 -3.3859 9.2889 -6.4075 26 1 -4.6015 8.6594 -6.9830 27 1 -3.6482 10.7276 -6.1496 28 1 -2.2586 9.1551 -7.3649 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.9216 2.4725 0.2299 35 1 3.8822 0.8448 0.9505 36 1 4.1538 -0.0040 -3.6086 37 1 4.2786 1.5942 -4.3830 38 1 5.5875 1.0126 -3.3266 39 1 1.9600 0.6515 -2.7482 40 1 2.0438 2.3408 -3.3113 41 1 -0.8156 5.1561 -1.7054 42 1 0.1117 5.8725 -4.2752 43 1 -1.2859 4.7869 -4.4658 44 1 -2.7578 5.6433 -1.9146 45 1 -3.6899 6.9709 -2.6479 46 1 -3.5054 5.4280 -3.5155 47 1 -0.1471 8.0387 -3.0565 48 1 -1.7284 8.4958 -2.3799 49 1 -0.7967 7.1680 -1.6466 50 1 -4.0377 9.6442 -3.6635 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422486293.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:26 Heat of formation + Delta-G solvation = -123.421515 kcal Electronic energy + Delta-G solvation = -29687.135214 eV Core-core repulsion = 25714.358616 eV Total energy + Delta-G solvation = -3972.776598 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.26001 -40.56023 -39.33312 -38.30611 -36.51448 -35.30022 -34.59024 -32.77791 -32.66349 -29.69218 -28.03919 -27.60677 -27.46209 -27.10975 -25.36145 -24.27780 -23.07807 -21.79389 -20.82555 -20.29933 -19.06791 -18.36857 -17.84609 -17.50732 -17.28723 -17.02901 -16.67046 -16.26445 -15.98605 -15.82109 -15.54200 -15.36241 -14.86811 -14.78638 -14.66042 -14.31061 -14.08359 -13.91744 -13.57693 -13.23341 -13.16201 -13.12437 -13.00430 -12.74636 -12.71502 -12.61261 -12.54825 -12.29875 -12.21973 -12.12730 -12.08743 -11.94481 -11.54059 -11.51909 -11.26962 -11.17933 -10.74311 -10.42424 -10.24680 -10.10576 -9.69688 -8.02147 -6.18770 0.26347 1.18345 1.44461 1.47630 1.55437 2.04512 2.34610 2.48953 2.74210 3.22039 3.23213 3.60548 3.69496 3.92472 3.97876 4.07170 4.21708 4.32160 4.38664 4.44303 4.46001 4.51645 4.58768 4.65124 4.66660 4.72904 4.84130 4.91338 4.93500 4.97398 5.01777 5.01916 5.05055 5.08005 5.15361 5.22254 5.29254 5.31283 5.36583 5.51778 5.63010 5.67002 5.88764 6.09583 6.13492 6.16730 6.20671 6.40080 6.64000 6.84563 6.91247 7.49516 8.97132 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.021489 B = 0.002857 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.660728 B = 9799.135578 C =10461.529006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C 0.095 3.905 4 H 0.102 0.898 5 C 0.058 3.942 6 O -0.382 6.382 7 C 0.076 3.924 8 H 0.056 0.944 9 C -0.138 4.138 10 C 0.026 3.974 11 N -0.573 5.573 12 C 0.511 3.489 13 O -0.540 6.540 14 C 0.500 3.500 15 O -0.532 6.532 16 N -0.677 5.677 17 C 0.143 3.857 18 C 0.050 3.950 19 C -0.124 4.124 20 C -0.123 4.123 21 C -0.526 4.526 22 H 0.053 0.947 23 C 0.026 3.974 24 N -0.902 5.902 25 Si 0.948 3.052 26 H -0.280 1.280 27 H -0.286 1.286 28 H -0.271 1.271 29 H 0.051 0.949 30 H 0.025 0.975 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.053 0.947 35 H 0.136 0.864 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.150 0.850 41 H 0.413 0.587 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.028 0.972 45 H 0.063 0.937 46 H 0.023 0.977 47 H 0.024 0.976 48 H 0.063 0.937 49 H 0.028 0.972 50 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.953 -16.959 7.122 23.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C -0.007 4.007 4 H 0.120 0.880 5 C -0.020 4.020 6 O -0.301 6.301 7 C 0.018 3.982 8 H 0.074 0.926 9 C -0.195 4.195 10 C -0.095 4.095 11 N -0.306 5.306 12 C 0.293 3.707 13 O -0.418 6.418 14 C 0.281 3.719 15 O -0.412 6.412 16 N -0.328 5.328 17 C 0.020 3.980 18 C 0.050 3.950 19 C -0.182 4.182 20 C -0.181 4.181 21 C -0.564 4.564 22 H 0.071 0.929 23 C -0.174 4.174 24 N -0.540 5.540 25 Si 0.775 3.225 26 H -0.206 1.206 27 H -0.212 1.212 28 H -0.196 1.196 29 H 0.070 0.930 30 H 0.045 0.955 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.120 0.880 34 H 0.072 0.928 35 H 0.154 0.846 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.166 0.834 41 H 0.250 0.750 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.047 0.953 45 H 0.082 0.918 46 H 0.042 0.958 47 H 0.044 0.956 48 H 0.081 0.919 49 H 0.047 0.953 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 13.957 -17.062 6.994 23.126 hybrid contribution -1.011 1.178 -0.455 1.617 sum 12.946 -15.884 6.539 21.510 Atomic orbital electron populations 1.21698 0.96182 1.01855 1.00718 1.21740 0.95552 0.94189 1.04131 1.22346 0.96924 0.94945 0.86511 0.88008 1.23091 0.89855 1.00296 0.88717 1.87938 1.74716 1.52218 1.15203 1.22628 0.92986 0.95520 0.87087 0.92592 1.21703 1.01085 1.01783 0.94957 1.24017 0.93097 1.04189 0.88150 1.48135 1.38357 1.33644 1.10424 1.20015 0.80769 0.81175 0.88710 1.90735 1.52261 1.64801 1.34015 1.20309 0.80383 0.81704 0.89499 1.90305 1.52862 1.64371 1.33681 1.46122 1.45041 1.28903 1.12719 1.21594 0.98618 0.94336 0.83443 1.18379 0.91262 0.90398 0.94979 1.21709 0.99931 0.99637 0.96894 1.21700 0.98903 1.00951 0.96556 1.21247 1.28474 1.13739 0.92962 0.92861 1.25503 0.95726 0.97391 0.98739 1.69932 1.32471 1.25577 1.26051 0.85708 0.78450 0.77620 0.80729 1.20577 1.21192 1.19609 0.93011 0.95537 0.91214 0.91238 0.88020 0.92829 0.84623 0.91215 0.89971 0.90803 0.90198 0.83363 0.74963 0.92260 0.92500 0.95341 0.91819 0.95799 0.95632 0.91858 0.95314 0.93079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.80 71.98 0.71 -2.19 16 2 C -0.12 -1.95 5.34 30.59 0.16 -1.78 16 3 C 0.10 1.85 2.61 44.97 0.12 1.97 16 4 H 0.10 2.17 7.09 -2.39 -0.02 2.15 16 5 C 0.06 0.91 6.36 72.08 0.46 1.37 16 6 O -0.38 -7.16 10.10 -148.98 -1.50 -8.66 16 7 C 0.08 1.45 3.41 30.83 0.11 1.56 16 8 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 9 C -0.14 -2.06 9.57 71.98 0.69 -1.37 16 10 C 0.03 0.59 5.30 86.49 0.46 1.05 16 11 N -0.57 -14.10 2.21 -794.30 -1.75 -15.85 16 12 C 0.51 15.59 7.48 87.27 0.65 16.24 16 13 O -0.54 -18.29 15.97 -3.24 -0.05 -18.35 16 14 C 0.50 16.77 7.81 87.27 0.68 17.45 16 15 O -0.53 -18.48 13.04 -3.23 -0.04 -18.52 16 16 N -0.68 -24.12 4.95 -464.41 -2.30 -26.42 16 17 C 0.14 5.74 4.50 86.38 0.39 6.13 16 18 C 0.05 2.30 0.50 -52.93 -0.03 2.27 16 19 C -0.12 -5.61 8.08 71.98 0.58 -5.02 16 20 C -0.12 -5.53 8.08 71.98 0.58 -4.95 16 21 C -0.53 -26.93 8.01 25.60 0.21 -26.73 16 22 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 23 C 0.03 1.35 5.15 84.65 0.44 1.79 16 24 N -0.90 -48.05 9.35 21.45 0.20 -47.85 16 25 Si 0.95 41.79 29.54 68.60 2.03 43.82 16 26 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 27 H -0.29 -12.50 7.11 99.48 0.71 -11.80 16 28 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 29 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.03 0.64 7.49 -2.38 -0.02 0.62 16 31 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.07 1.21 7.12 -2.39 -0.02 1.19 16 33 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 34 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.14 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 38 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 39 H 0.08 1.70 7.52 -2.39 -0.02 1.69 16 40 H 0.15 3.97 3.95 -73.33 -0.29 3.68 16 41 H 0.41 14.57 5.65 -92.71 -0.52 14.05 16 42 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 43 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 44 H 0.03 1.13 6.86 -2.39 -0.02 1.12 16 45 H 0.06 3.21 6.07 -2.39 -0.01 3.19 16 46 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 48 H 0.06 3.17 6.07 -2.39 -0.01 3.16 16 49 H 0.03 1.13 6.86 -2.39 -0.02 1.11 16 50 H 0.26 13.37 8.31 -92.71 -0.77 12.60 16 Total: -1.00 -57.48 385.06 2.91 -54.57 By element: Atomic # 1 Polarization: 29.34 SS G_CDS: 0.13 Total: 29.47 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: 6.20 Total: 7.80 kcal Atomic # 7 Polarization: -86.27 SS G_CDS: -3.85 Total: -90.12 kcal Atomic # 8 Polarization: -43.94 SS G_CDS: -1.60 Total: -45.53 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -57.48 2.91 -54.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422486293.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.852 kcal (2) G-P(sol) polarization free energy of solvation -57.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds