Wall clock time and date at job start Tue Mar 31 2020 15:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47392 * 2 1 4 4 H 1.09006 * 109.46957 * 304.99607 * 3 2 1 5 5 C 1.54802 * 109.47153 * 185.00089 * 3 2 1 6 6 N 1.45124 * 109.53022 * 172.11505 * 5 3 2 7 7 C 1.34782 * 118.75266 * 269.26035 * 6 5 3 8 8 O 1.21348 * 119.99689 * 178.37207 * 7 6 5 9 9 C 1.49449 * 120.00063 * 358.37422 * 7 6 5 10 10 O 1.21341 * 120.00106 * 6.20641 * 9 7 6 11 11 N 1.34778 * 119.99846 * 186.21371 * 9 7 6 12 12 C 1.46493 * 119.99960 * 179.97438 * 11 9 7 13 13 C 1.53000 * 109.47518 * 179.97438 * 12 11 9 14 14 C 1.53004 * 109.47079 * 300.00251 * 13 12 11 15 15 C 1.53002 * 109.47074 * 59.99765 * 13 12 11 16 16 C 1.50694 * 109.47389 * 180.02562 * 13 12 11 17 17 H 1.07993 * 120.00479 * 359.97438 * 16 13 12 18 18 C 1.37887 * 119.99788 * 180.02562 * 16 13 12 19 19 N 1.31516 * 119.99992 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99808 * 180.02562 * 18 16 13 21 21 H 1.48502 * 109.47197 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47365 * 119.99735 * 20 18 16 23 23 H 1.48501 * 109.46937 * 239.99709 * 20 18 16 24 24 C 1.47510 * 122.48894 * 89.28298 * 6 5 3 25 25 C 1.53564 * 111.03004 * 318.37116 * 24 6 5 26 26 C 1.51546 * 109.58605 * 320.02510 * 25 24 6 27 27 O 1.38015 * 109.45581 * 64.99755 * 3 2 1 28 28 H 1.08994 * 109.47309 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47122 * 300.00445 * 1 2 3 30 30 H 1.09004 * 109.46817 * 60.00148 * 1 2 3 31 31 H 1.08997 * 109.47124 * 240.00092 * 2 1 3 32 32 H 1.08995 * 109.46929 * 120.00415 * 2 1 3 33 33 H 1.09000 * 109.46215 * 52.09494 * 5 3 2 34 34 H 1.09002 * 109.46054 * 292.12292 * 5 3 2 35 35 H 0.96999 * 119.99885 * 359.97438 * 11 9 7 36 36 H 1.09001 * 109.47378 * 299.99580 * 12 11 9 37 37 H 1.09001 * 109.47448 * 59.99525 * 12 11 9 38 38 H 1.08999 * 109.47151 * 59.99521 * 14 13 12 39 39 H 1.08997 * 109.46997 * 179.97438 * 14 13 12 40 40 H 1.09007 * 109.46755 * 299.99838 * 14 13 12 41 41 H 1.09000 * 109.47069 * 59.99900 * 15 13 12 42 42 H 1.08997 * 109.47661 * 180.02562 * 15 13 12 43 43 H 1.08999 * 109.47137 * 300.00467 * 15 13 12 44 44 H 0.97000 * 119.99939 * 180.02562 * 19 18 16 45 45 H 1.08999 * 109.16615 * 78.77215 * 24 6 5 46 46 H 1.09003 * 109.16539 * 198.02491 * 24 6 5 47 47 H 1.09004 * 109.45516 * 80.05407 * 25 24 6 48 48 H 1.09002 * 109.45741 * 199.99216 * 25 24 6 49 49 H 1.08999 * 109.59147 * 211.18020 * 26 25 24 50 50 H 1.08997 * 109.58811 * 331.61922 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5829 1.4443 -0.1272 6 7 4.0527 2.8045 -0.3146 7 6 4.1805 3.2791 -1.5696 8 8 4.5431 4.4228 -1.7517 9 6 3.8757 2.3970 -2.7369 10 8 3.4063 1.2927 -2.5565 11 7 4.1223 2.8280 -3.9898 12 6 3.8241 1.9631 -5.1339 13 6 4.1940 2.6865 -6.4304 14 6 3.3825 3.9788 -6.5427 15 6 5.6869 3.0212 -6.4195 16 6 3.8866 1.7970 -7.6073 17 1 3.4695 0.8139 -7.4468 18 6 4.1388 2.2381 -8.8892 19 7 4.6471 3.4351 -9.0846 20 14 3.7571 1.1357 -10.3481 21 1 3.1956 -0.1507 -9.8631 22 1 2.7685 1.8065 -11.2302 23 1 5.0042 0.8748 -11.1110 24 6 4.3959 3.6871 0.8163 25 6 3.3734 3.5486 1.9536 26 6 1.9787 3.4346 1.3716 27 8 1.6748 2.0592 1.1794 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.8774 0.8371 -0.9832 34 1 4.0226 1.0301 0.7801 35 1 4.4973 3.7109 -4.1340 36 1 4.4019 1.0423 -5.0538 37 1 2.7604 1.7249 -5.1419 38 1 3.6044 4.6223 -5.6914 39 1 3.6463 4.4944 -7.4660 40 1 2.3188 3.7403 -6.5504 41 1 6.2650 2.1007 -6.3395 42 1 5.9504 3.5370 -7.3429 43 1 5.9088 3.6648 -5.5682 44 1 4.8242 3.7455 -9.9864 45 1 5.3849 3.4217 1.1900 46 1 4.4092 4.7212 0.4720 47 1 3.5975 2.6552 2.5365 48 1 3.4268 4.4256 2.5987 49 1 1.2581 3.8754 2.0605 50 1 1.9384 3.9550 0.4148 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000422491061.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:20 Heat of formation + Delta-G solvation = -107.815527 kcal Electronic energy + Delta-G solvation = -29812.071865 eV Core-core repulsion = 25839.971993 eV Total energy + Delta-G solvation = -3972.099872 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.13031 -39.36206 -38.29151 -36.64319 -35.58671 -34.53291 -33.32748 -31.89993 -30.93146 -28.37604 -27.24178 -26.06954 -25.75673 -25.28705 -24.06441 -22.93262 -21.27169 -21.08337 -19.83582 -18.84503 -17.69543 -17.26099 -16.90519 -16.39687 -16.02559 -15.63059 -15.47471 -15.07056 -14.74436 -14.55683 -14.06761 -13.86407 -13.85718 -13.50608 -13.40618 -12.96395 -12.86058 -12.76805 -12.58977 -12.24492 -12.04715 -11.70428 -11.49911 -11.44223 -11.24815 -11.11134 -11.05090 -10.95065 -10.89374 -10.69160 -10.58754 -10.43148 -10.22502 -9.78485 -9.68888 -9.47385 -9.10822 -8.83567 -8.78252 -8.55980 -8.39967 -6.05488 -4.16371 1.57392 2.42824 3.25081 3.33950 3.34522 3.37626 3.53815 3.65910 4.35891 4.46664 4.58863 4.64585 4.84135 4.90936 5.00099 5.05038 5.19071 5.21343 5.21809 5.37711 5.43308 5.53002 5.59560 5.64285 5.78583 5.80582 5.95697 5.97065 6.06619 6.12790 6.19054 6.23984 6.30648 6.43138 6.62917 6.80018 6.81462 6.90221 6.95550 6.96696 7.29561 7.51253 7.51708 7.56146 7.66526 7.90723 7.96731 8.09104 8.27489 8.36823 8.84132 9.49793 10.95942 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.018822 B = 0.003055 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.302857 B = 9163.476895 C =10156.312574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.108 4.108 3 C 0.099 3.901 4 H 0.052 0.948 5 C 0.045 3.955 6 N -0.585 5.585 7 C 0.500 3.500 8 O -0.522 6.522 9 C 0.495 3.505 10 O -0.525 6.525 11 N -0.677 5.677 12 C 0.128 3.872 13 C 0.056 3.944 14 C -0.133 4.133 15 C -0.133 4.133 16 C -0.507 4.507 17 H 0.059 0.941 18 C 0.066 3.934 19 N -0.884 5.884 20 Si 0.894 3.106 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.104 3.896 25 C -0.163 4.163 26 C 0.075 3.925 27 O -0.387 6.387 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.141 0.859 34 H 0.074 0.926 35 H 0.411 0.589 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.008 0.992 39 H 0.087 0.913 40 H 0.027 0.973 41 H 0.027 0.973 42 H 0.087 0.913 43 H 0.007 0.993 44 H 0.260 0.740 45 H 0.070 0.930 46 H 0.094 0.906 47 H 0.080 0.920 48 H 0.087 0.913 49 H 0.090 0.910 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.945 -1.208 20.684 20.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.146 4.146 3 C 0.040 3.960 4 H 0.069 0.931 5 C -0.077 4.077 6 N -0.319 5.319 7 C 0.283 3.717 8 O -0.398 6.398 9 C 0.275 3.725 10 O -0.404 6.404 11 N -0.328 5.328 12 C 0.006 3.994 13 C 0.055 3.945 14 C -0.191 4.191 15 C -0.191 4.191 16 C -0.546 4.546 17 H 0.077 0.923 18 C -0.135 4.135 19 N -0.522 5.522 20 Si 0.722 3.278 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.211 1.211 24 C -0.017 4.017 25 C -0.202 4.202 26 C -0.002 4.002 27 O -0.306 6.306 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.104 0.896 32 H 0.085 0.915 33 H 0.158 0.842 34 H 0.092 0.908 35 H 0.248 0.752 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.027 0.973 39 H 0.106 0.894 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.106 0.894 43 H 0.026 0.974 44 H 0.070 0.930 45 H 0.088 0.912 46 H 0.112 0.888 47 H 0.099 0.901 48 H 0.105 0.895 49 H 0.108 0.892 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.093 -1.348 20.666 20.940 hybrid contribution 0.244 0.114 -0.995 1.031 sum -2.848 -1.234 19.671 19.915 Atomic orbital electron populations 1.21689 0.95335 1.01389 1.02049 1.21447 0.96559 0.93596 1.02974 1.21969 0.92985 0.94434 0.86625 0.93056 1.23474 0.95705 0.82598 1.05959 1.47793 1.64257 1.14771 1.05028 1.20613 0.78680 0.87637 0.84768 1.90737 1.45362 1.18342 1.85325 1.19939 0.80765 0.87010 0.84752 1.90523 1.44840 1.20890 1.84174 1.46267 1.60506 1.20961 1.05069 1.21958 1.00200 0.92941 0.84269 1.18388 0.92928 0.93428 0.89771 1.21856 0.98171 0.98061 1.01014 1.21855 0.97487 0.98901 1.00862 1.20980 1.42420 1.01137 0.90025 0.92278 1.24890 0.94741 0.95091 0.98789 1.69818 1.43822 1.17338 1.21247 0.86501 0.77982 0.80802 0.82510 1.19735 1.21040 1.21054 1.21937 0.97978 0.95810 0.86006 1.22459 0.95876 1.03819 0.98017 1.22137 0.95285 0.82502 1.00260 1.86230 1.80933 1.24144 1.39334 0.92810 0.92322 0.92880 0.89583 0.91457 0.84194 0.90766 0.75205 0.91902 0.91913 0.97319 0.89438 0.95349 0.95342 0.89420 0.97355 0.92978 0.91211 0.88806 0.90126 0.89458 0.89200 0.93095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.80 37.16 0.36 -1.13 16 2 C -0.11 -1.15 5.64 -26.73 -0.15 -1.30 16 3 C 0.10 1.19 2.16 -25.78 -0.06 1.14 16 4 H 0.05 0.73 7.84 -51.93 -0.41 0.33 16 5 C 0.05 0.54 4.44 -3.83 -0.02 0.52 16 6 N -0.58 -7.44 2.19 -172.98 -0.38 -7.82 16 7 C 0.50 7.79 7.70 -11.58 -0.09 7.70 16 8 O -0.52 -9.07 15.79 5.50 0.09 -8.98 16 9 C 0.50 8.38 7.74 -11.58 -0.09 8.29 16 10 O -0.52 -9.03 12.30 5.50 0.07 -8.96 16 11 N -0.68 -12.23 4.95 -60.74 -0.30 -12.53 16 12 C 0.13 2.59 4.50 -4.05 -0.02 2.57 16 13 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 14 C -0.13 -3.02 8.08 37.16 0.30 -2.72 16 15 C -0.13 -3.00 8.08 37.16 0.30 -2.70 16 16 C -0.51 -12.95 8.01 -34.44 -0.28 -13.22 16 17 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 18 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 19 N -0.88 -23.36 9.35 55.43 0.52 -22.84 16 20 Si 0.89 20.38 29.54 -169.99 -5.02 15.36 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 C 0.10 1.06 6.16 -3.20 -0.02 1.04 16 25 C -0.16 -1.32 5.78 -27.17 -0.16 -1.48 16 26 C 0.07 0.72 6.38 36.42 0.23 0.96 16 27 O -0.39 -4.44 8.99 -26.54 -0.24 -4.68 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.60 7.82 -51.93 -0.41 0.19 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.14 1.90 4.80 -53.89 -0.26 1.64 16 34 H 0.07 0.77 8.11 -51.93 -0.42 0.35 16 35 H 0.41 7.43 5.65 -40.82 -0.23 7.20 16 36 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.01 0.16 6.86 -51.93 -0.36 -0.19 16 39 H 0.09 2.19 6.07 -51.93 -0.32 1.87 16 40 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.09 2.19 6.07 -51.93 -0.32 1.87 16 43 H 0.01 0.15 6.86 -51.93 -0.36 -0.20 16 44 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 45 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.09 1.03 6.98 -51.93 -0.36 0.67 16 47 H 0.08 0.65 8.01 -51.93 -0.42 0.23 16 48 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.05 0.58 7.40 -51.93 -0.38 0.19 16 LS Contribution 382.66 15.07 5.77 5.77 Total: -1.00 -27.19 382.66 -7.77 -34.96 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -8.42 Total: 7.27 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: 0.15 Total: 2.47 kcal Atomic # 7 Polarization: -43.03 SS G_CDS: -0.16 Total: -43.19 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.08 Total: -22.62 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -27.19 -7.77 -34.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422491061.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.860 kcal (2) G-P(sol) polarization free energy of solvation -27.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds