Wall clock time and date at job start Tue Mar 31 2020 15:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47392 * 2 1 4 4 H 1.09006 * 109.46957 * 304.99607 * 3 2 1 5 5 C 1.54802 * 109.47153 * 185.00089 * 3 2 1 6 6 N 1.45124 * 109.53022 * 172.11505 * 5 3 2 7 7 C 1.34782 * 118.75266 * 269.26035 * 6 5 3 8 8 O 1.21348 * 119.99689 * 178.37207 * 7 6 5 9 9 C 1.49449 * 120.00063 * 358.37422 * 7 6 5 10 10 O 1.21341 * 120.00106 * 6.20641 * 9 7 6 11 11 N 1.34778 * 119.99846 * 186.21371 * 9 7 6 12 12 C 1.46493 * 119.99960 * 179.97438 * 11 9 7 13 13 C 1.53000 * 109.47518 * 179.97438 * 12 11 9 14 14 C 1.53004 * 109.47079 * 300.00251 * 13 12 11 15 15 C 1.53002 * 109.47074 * 59.99765 * 13 12 11 16 16 C 1.50694 * 109.47389 * 180.02562 * 13 12 11 17 17 H 1.07993 * 120.00479 * 359.97438 * 16 13 12 18 18 C 1.37887 * 119.99788 * 180.02562 * 16 13 12 19 19 N 1.31516 * 119.99992 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99808 * 180.02562 * 18 16 13 21 21 H 1.48502 * 109.47197 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47365 * 119.99735 * 20 18 16 23 23 H 1.48501 * 109.46937 * 239.99709 * 20 18 16 24 24 C 1.47510 * 122.48894 * 89.28298 * 6 5 3 25 25 C 1.53564 * 111.03004 * 318.37116 * 24 6 5 26 26 C 1.51546 * 109.58605 * 320.02510 * 25 24 6 27 27 O 1.38015 * 109.45581 * 64.99755 * 3 2 1 28 28 H 1.08994 * 109.47309 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47122 * 300.00445 * 1 2 3 30 30 H 1.09004 * 109.46817 * 60.00148 * 1 2 3 31 31 H 1.08997 * 109.47124 * 240.00092 * 2 1 3 32 32 H 1.08995 * 109.46929 * 120.00415 * 2 1 3 33 33 H 1.09000 * 109.46215 * 52.09494 * 5 3 2 34 34 H 1.09002 * 109.46054 * 292.12292 * 5 3 2 35 35 H 0.96999 * 119.99885 * 359.97438 * 11 9 7 36 36 H 1.09001 * 109.47378 * 299.99580 * 12 11 9 37 37 H 1.09001 * 109.47448 * 59.99525 * 12 11 9 38 38 H 1.08999 * 109.47151 * 59.99521 * 14 13 12 39 39 H 1.08997 * 109.46997 * 179.97438 * 14 13 12 40 40 H 1.09007 * 109.46755 * 299.99838 * 14 13 12 41 41 H 1.09000 * 109.47069 * 59.99900 * 15 13 12 42 42 H 1.08997 * 109.47661 * 180.02562 * 15 13 12 43 43 H 1.08999 * 109.47137 * 300.00467 * 15 13 12 44 44 H 0.97000 * 119.99939 * 180.02562 * 19 18 16 45 45 H 1.08999 * 109.16615 * 78.77215 * 24 6 5 46 46 H 1.09003 * 109.16539 * 198.02491 * 24 6 5 47 47 H 1.09004 * 109.45516 * 80.05407 * 25 24 6 48 48 H 1.09002 * 109.45741 * 199.99216 * 25 24 6 49 49 H 1.08999 * 109.59147 * 211.18020 * 26 25 24 50 50 H 1.08997 * 109.58811 * 331.61922 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5829 1.4443 -0.1272 6 7 4.0527 2.8045 -0.3146 7 6 4.1805 3.2791 -1.5696 8 8 4.5431 4.4228 -1.7517 9 6 3.8757 2.3970 -2.7369 10 8 3.4063 1.2927 -2.5565 11 7 4.1223 2.8280 -3.9898 12 6 3.8241 1.9631 -5.1339 13 6 4.1940 2.6865 -6.4304 14 6 3.3825 3.9788 -6.5427 15 6 5.6869 3.0212 -6.4195 16 6 3.8866 1.7970 -7.6073 17 1 3.4695 0.8139 -7.4468 18 6 4.1388 2.2381 -8.8892 19 7 4.6471 3.4351 -9.0846 20 14 3.7571 1.1357 -10.3481 21 1 3.1956 -0.1507 -9.8631 22 1 2.7685 1.8065 -11.2302 23 1 5.0042 0.8748 -11.1110 24 6 4.3959 3.6871 0.8163 25 6 3.3734 3.5486 1.9536 26 6 1.9787 3.4346 1.3716 27 8 1.6748 2.0592 1.1794 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.8774 0.8371 -0.9832 34 1 4.0226 1.0301 0.7801 35 1 4.4973 3.7109 -4.1340 36 1 4.4019 1.0423 -5.0538 37 1 2.7604 1.7249 -5.1419 38 1 3.6044 4.6223 -5.6914 39 1 3.6463 4.4944 -7.4660 40 1 2.3188 3.7403 -6.5504 41 1 6.2650 2.1007 -6.3395 42 1 5.9504 3.5370 -7.3429 43 1 5.9088 3.6648 -5.5682 44 1 4.8242 3.7455 -9.9864 45 1 5.3849 3.4217 1.1900 46 1 4.4092 4.7212 0.4720 47 1 3.5975 2.6552 2.5365 48 1 3.4268 4.4256 2.5987 49 1 1.2581 3.8754 2.0605 50 1 1.9384 3.9550 0.4148 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422491061.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:19 Heat of formation + Delta-G solvation = -123.069883 kcal Electronic energy + Delta-G solvation = -29812.733343 eV Core-core repulsion = 25839.971993 eV Total energy + Delta-G solvation = -3972.761350 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.29169 -40.48348 -39.54361 -38.27892 -36.67712 -35.47015 -34.89391 -32.77388 -32.72953 -29.35210 -28.35031 -27.60696 -27.50402 -27.06636 -25.27621 -23.97378 -22.22386 -22.05858 -21.07370 -20.56568 -18.98075 -18.36118 -17.90125 -17.78397 -17.40361 -16.94781 -16.64962 -16.53703 -16.27127 -15.70461 -15.30425 -15.10041 -14.85284 -14.72354 -14.59336 -14.32261 -14.18234 -14.09392 -13.71188 -13.52568 -13.23119 -13.13486 -12.89255 -12.72091 -12.66805 -12.56110 -12.34177 -12.29500 -12.13104 -12.05488 -11.89455 -11.85606 -11.52729 -11.45739 -11.26971 -10.74099 -10.67010 -10.42411 -10.35059 -10.14775 -9.70678 -8.02201 -6.18678 0.28359 1.25941 1.43034 1.47549 1.56578 2.04871 2.39348 2.50715 2.69652 3.21955 3.27481 3.70202 3.79511 4.00516 4.04602 4.11308 4.25681 4.33361 4.33888 4.42703 4.46952 4.52805 4.65634 4.66381 4.68717 4.75602 4.85148 4.93664 4.95269 5.00679 5.01978 5.06685 5.10611 5.14847 5.15492 5.26039 5.29382 5.32608 5.45456 5.49996 5.63070 5.67112 5.81757 6.09425 6.17430 6.23878 6.40145 6.60107 6.67521 6.85236 6.93218 7.49559 8.97257 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.018822 B = 0.003055 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.302857 B = 9163.476895 C =10156.312574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.107 4.107 3 C 0.106 3.894 4 H 0.022 0.978 5 C 0.046 3.954 6 N -0.574 5.574 7 C 0.500 3.500 8 O -0.544 6.544 9 C 0.494 3.506 10 O -0.528 6.528 11 N -0.681 5.681 12 C 0.145 3.855 13 C 0.050 3.950 14 C -0.123 4.123 15 C -0.123 4.123 16 C -0.524 4.524 17 H 0.053 0.947 18 C 0.026 3.974 19 N -0.902 5.902 20 Si 0.948 3.052 21 H -0.271 1.271 22 H -0.284 1.284 23 H -0.283 1.283 24 C 0.098 3.902 25 C -0.152 4.152 26 C 0.067 3.933 27 O -0.391 6.391 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.038 0.962 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.125 0.875 34 H 0.098 0.902 35 H 0.411 0.589 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.027 0.973 39 H 0.063 0.937 40 H 0.023 0.977 41 H 0.024 0.976 42 H 0.063 0.937 43 H 0.028 0.972 44 H 0.260 0.740 45 H 0.088 0.912 46 H 0.084 0.916 47 H 0.089 0.911 48 H 0.116 0.884 49 H 0.112 0.888 50 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.979 -1.701 23.013 23.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.144 4.144 3 C 0.046 3.954 4 H 0.040 0.960 5 C -0.076 4.076 6 N -0.306 5.306 7 C 0.283 3.717 8 O -0.422 6.422 9 C 0.275 3.725 10 O -0.407 6.407 11 N -0.332 5.332 12 C 0.022 3.978 13 C 0.049 3.951 14 C -0.181 4.181 15 C -0.181 4.181 16 C -0.563 4.563 17 H 0.071 0.929 18 C -0.174 4.174 19 N -0.540 5.540 20 Si 0.775 3.225 21 H -0.195 1.195 22 H -0.210 1.210 23 H -0.209 1.209 24 C -0.023 4.023 25 C -0.190 4.190 26 C -0.009 4.009 27 O -0.310 6.310 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.058 0.942 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.142 0.858 34 H 0.116 0.884 35 H 0.248 0.752 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.046 0.954 39 H 0.082 0.918 40 H 0.042 0.958 41 H 0.044 0.956 42 H 0.081 0.919 43 H 0.046 0.954 44 H 0.069 0.931 45 H 0.106 0.894 46 H 0.103 0.897 47 H 0.107 0.893 48 H 0.134 0.866 49 H 0.130 0.870 50 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -3.134 -1.857 23.042 23.328 hybrid contribution 0.230 0.265 -1.622 1.659 sum -2.905 -1.592 21.420 21.675 Atomic orbital electron populations 1.21662 0.95002 1.02111 1.01388 1.21445 0.96849 0.92795 1.03345 1.21834 0.92691 0.94892 0.85983 0.96037 1.23461 0.95852 0.81969 1.06306 1.47930 1.62664 1.15305 1.04748 1.20293 0.79088 0.87084 0.85256 1.90728 1.46935 1.18937 1.85641 1.20256 0.80203 0.87155 0.84843 1.90542 1.44593 1.21175 1.84395 1.46111 1.61347 1.20711 1.05059 1.21542 0.99500 0.92661 0.84049 1.18384 0.93095 0.93299 0.90295 1.21700 0.97743 0.98106 1.00533 1.21697 0.97222 0.98770 1.00393 1.21271 1.42400 1.01332 0.91274 0.92908 1.25507 0.94833 0.96174 1.00877 1.69937 1.44294 1.18291 1.21520 0.85654 0.77624 0.79375 0.79834 1.19503 1.20994 1.20938 1.22218 0.99728 0.94746 0.85559 1.22419 0.93757 1.05570 0.97240 1.22355 0.97198 0.81464 0.99874 1.86229 1.81142 1.25048 1.38613 0.91413 0.92232 0.94239 0.90410 0.89807 0.85770 0.88356 0.75168 0.92382 0.92693 0.95410 0.91848 0.95831 0.95648 0.91862 0.95354 0.93092 0.89360 0.89714 0.89289 0.86589 0.86986 0.95232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.80 71.98 0.71 -2.08 16 2 C -0.11 -2.14 5.64 30.60 0.17 -1.97 16 3 C 0.11 2.43 2.16 31.21 0.07 2.50 16 4 H 0.02 0.63 7.84 -2.38 -0.02 0.61 16 5 C 0.05 1.04 4.44 87.25 0.39 1.42 16 6 N -0.57 -13.81 2.19 -819.54 -1.80 -15.61 16 7 C 0.50 15.32 7.70 87.27 0.67 16.00 16 8 O -0.54 -18.67 15.79 -3.24 -0.05 -18.72 16 9 C 0.49 16.66 7.74 87.27 0.68 17.34 16 10 O -0.53 -18.16 12.30 -3.22 -0.04 -18.20 16 11 N -0.68 -24.53 4.95 -464.43 -2.30 -26.83 16 12 C 0.15 5.89 4.50 86.38 0.39 6.28 16 13 C 0.05 2.29 0.50 -52.93 -0.03 2.27 16 14 C -0.12 -5.61 8.08 71.98 0.58 -5.03 16 15 C -0.12 -5.56 8.08 71.98 0.58 -4.98 16 16 C -0.52 -27.02 8.01 25.60 0.21 -26.81 16 17 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 18 C 0.03 1.34 5.15 84.66 0.44 1.78 16 19 N -0.90 -48.23 9.35 21.45 0.20 -48.03 16 20 Si 0.95 42.00 29.54 68.60 2.03 44.02 16 21 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 22 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 23 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 24 C 0.10 1.75 6.16 86.38 0.53 2.28 16 25 C -0.15 -1.95 5.78 30.31 0.18 -1.77 16 26 C 0.07 1.15 6.38 71.51 0.46 1.61 16 27 O -0.39 -8.20 8.99 -117.87 -1.06 -9.26 16 28 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.06 1.13 7.82 -2.39 -0.02 1.11 16 30 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.13 3.26 4.80 -33.49 -0.16 3.10 16 34 H 0.10 1.76 8.11 -2.39 -0.02 1.74 16 35 H 0.41 14.75 5.65 -92.71 -0.52 14.22 16 36 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.03 1.12 6.86 -2.39 -0.02 1.10 16 39 H 0.06 3.21 6.07 -2.39 -0.01 3.20 16 40 H 0.02 1.04 8.14 -2.38 -0.02 1.02 16 41 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.06 3.19 6.07 -2.39 -0.01 3.17 16 43 H 0.03 1.12 6.86 -2.39 -0.02 1.11 16 44 H 0.26 13.37 8.31 -92.71 -0.77 12.60 16 45 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.08 1.72 6.98 -2.39 -0.02 1.70 16 47 H 0.09 1.07 8.01 -2.38 -0.02 1.05 16 48 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 49 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 50 H 0.03 0.64 7.40 -2.39 -0.02 0.62 16 Total: -1.00 -58.26 382.66 3.25 -55.01 By element: Atomic # 1 Polarization: 28.52 SS G_CDS: 0.26 Total: 28.78 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: 6.01 Total: 8.84 kcal Atomic # 7 Polarization: -86.58 SS G_CDS: -3.89 Total: -90.47 kcal Atomic # 8 Polarization: -45.03 SS G_CDS: -1.15 Total: -46.18 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.02 kcal Total: -58.26 3.25 -55.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422491061.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.055 kcal (2) G-P(sol) polarization free energy of solvation -58.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds