Wall clock time and date at job start Tue Mar 31 2020 14:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.47286 * 2 1 4 4 C 1.53002 * 109.46943 * 240.00405 * 2 1 3 5 5 O 1.45196 * 109.47464 * 120.00304 * 2 1 3 6 6 C 1.34634 * 116.99736 * 59.99328 * 5 2 1 7 7 O 1.21512 * 120.00351 * 0.02562 * 6 5 2 8 8 N 1.34777 * 119.99817 * 180.02562 * 6 5 2 9 9 C 1.46496 * 120.00258 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47421 * 180.02562 * 9 8 6 11 11 C 1.50706 * 109.46925 * 180.02562 * 10 9 8 12 12 O 1.21279 * 120.00072 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99762 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00258 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.46871 * 90.00155 * 14 13 11 16 16 H 1.07998 * 120.00222 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00011 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99586 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99962 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47471 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47050 * 120.00144 * 19 17 15 22 22 H 1.48498 * 109.47220 * 239.99721 * 19 17 15 23 23 C 1.46504 * 119.99858 * 0.02562 * 13 11 10 24 24 C 1.52999 * 109.47507 * 89.99839 * 23 13 11 25 25 C 1.53003 * 117.49748 * 243.62506 * 24 23 13 26 26 C 1.52992 * 117.50002 * 174.99956 * 24 23 13 27 27 H 1.09006 * 109.47113 * 300.00056 * 1 2 3 28 28 H 1.09008 * 109.47148 * 59.99463 * 1 2 3 29 29 H 1.08996 * 109.47296 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47381 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47000 * 300.00340 * 3 2 1 32 32 H 1.09004 * 109.46588 * 60.00001 * 3 2 1 33 33 H 1.08995 * 109.46889 * 299.99648 * 4 2 1 34 34 H 1.08994 * 109.47198 * 59.99893 * 4 2 1 35 35 H 1.08999 * 109.46961 * 179.97438 * 4 2 1 36 36 H 0.97008 * 120.00336 * 0.02562 * 8 6 5 37 37 H 1.09004 * 109.46875 * 60.00324 * 9 8 6 38 38 H 1.09004 * 109.47522 * 300.00473 * 9 8 6 39 39 H 1.09000 * 109.46497 * 60.00401 * 10 9 8 40 40 H 1.09000 * 109.47312 * 300.00180 * 10 9 8 41 41 H 1.09000 * 109.47710 * 210.00590 * 14 13 11 42 42 H 1.09000 * 109.46883 * 330.00634 * 14 13 11 43 43 H 0.97008 * 119.99716 * 180.02562 * 18 17 15 44 44 H 1.09005 * 109.47121 * 209.99861 * 23 13 11 45 45 H 1.08997 * 109.47160 * 329.99513 * 23 13 11 46 46 H 1.09002 * 115.54589 * 29.32423 * 24 23 13 47 47 H 1.08995 * 117.49876 * 359.97438 * 25 24 23 48 48 H 1.09002 * 117.49846 * 145.02378 * 25 24 23 49 49 H 1.09007 * 117.49671 * 214.97834 * 26 24 23 50 50 H 1.09002 * 117.50190 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3382 7 8 0.9514 -2.5096 0.5035 8 7 2.0672 -2.6654 2.4170 9 6 1.6740 -4.0668 2.5830 10 6 2.2730 -4.6145 3.8800 11 6 1.8690 -6.0564 4.0503 12 8 1.1711 -6.5932 3.2163 13 7 2.2841 -6.7496 5.1290 14 6 1.8909 -8.1510 5.2950 15 6 2.9168 -9.0412 4.6421 16 1 3.7759 -8.6065 4.1528 17 6 2.7585 -10.4106 4.6693 18 7 1.7121 -10.9398 5.2647 19 14 4.0297 -11.5139 3.8593 20 1 5.1025 -10.6782 3.2628 21 1 4.6180 -12.4213 4.8771 22 1 3.3795 -12.3196 2.7948 23 6 3.1276 -6.1012 6.1362 24 6 2.2424 -5.4606 7.2072 25 6 2.2971 -3.9383 7.3509 26 6 2.9387 -4.8308 8.4152 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5140 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 -1.7488 -1.2493 34 1 1.6766 -0.2073 -2.1392 35 1 3.1299 -0.7208 -1.2496 36 1 2.6263 -2.2364 3.0836 37 1 2.0412 -4.6497 1.7382 38 1 0.5871 -4.1365 2.6274 39 1 1.9054 -4.0315 4.7244 40 1 3.3599 -4.5449 3.8360 41 1 1.8280 -8.3874 6.3572 42 1 0.9193 -8.3134 4.8285 43 1 1.6009 -11.9033 5.2842 44 1 3.7775 -6.8442 6.5988 45 1 3.7361 -5.3324 5.6602 46 1 1.2826 -5.9484 7.3771 47 1 2.9639 -3.3933 6.6828 48 1 1.3730 -3.4243 7.6156 49 1 2.4367 -4.9040 9.3800 50 1 4.0274 -4.8733 8.4473 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491170215.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:05 Heat of formation + Delta-G solvation = -101.734980 kcal Electronic energy + Delta-G solvation = -28298.107838 eV Core-core repulsion = 24326.271639 eV Total energy + Delta-G solvation = -3971.836199 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.83156 -39.38202 -37.62105 -37.19036 -35.18141 -34.46153 -34.10552 -32.57536 -30.75542 -27.85312 -27.65135 -27.57576 -26.27047 -24.47660 -22.60109 -22.35752 -21.68877 -20.73695 -20.24113 -18.66905 -17.97235 -16.98394 -16.54882 -16.41852 -16.36055 -15.45604 -15.36486 -15.11880 -14.67344 -14.59662 -14.46800 -14.18115 -14.15357 -13.57717 -13.22561 -12.80769 -12.71938 -12.49334 -12.33507 -12.16385 -12.11444 -12.09902 -11.81726 -11.72338 -11.50088 -11.49660 -11.43258 -11.26843 -11.20002 -10.87229 -10.63232 -10.52405 -10.37833 -10.14023 -10.11429 -9.87399 -9.61955 -9.19718 -8.97780 -8.44527 -7.72467 -6.05409 -4.09994 2.05853 2.80920 3.29445 3.32762 3.37904 3.41647 3.71366 3.90505 4.13671 4.44450 4.49108 4.53113 4.67677 4.81471 4.84378 4.95374 4.98263 5.17793 5.21539 5.27831 5.30029 5.30664 5.37830 5.40780 5.44926 5.53130 5.57901 5.62854 5.64434 5.73815 5.80204 5.91868 5.95997 5.98048 6.05050 6.09869 6.12583 6.12962 6.31580 6.40604 6.43325 7.02423 7.35551 7.42703 7.50757 7.90855 8.21749 8.33682 8.35951 8.87737 9.03855 9.55201 11.02776 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.012815 B = 0.002692 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.392107 B =10400.433656 C =11958.621046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.140 4.140 4 C -0.185 4.185 5 O -0.368 6.368 6 C 0.648 3.352 7 O -0.563 6.563 8 N -0.710 5.710 9 C 0.152 3.848 10 C -0.156 4.156 11 C 0.513 3.487 12 O -0.536 6.536 13 N -0.593 5.593 14 C 0.246 3.754 15 C -0.526 4.526 16 H 0.058 0.942 17 C 0.061 3.939 18 N -0.894 5.894 19 Si 0.898 3.102 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.283 1.283 23 C 0.142 3.858 24 C -0.165 4.165 25 C -0.186 4.186 26 C -0.176 4.176 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.403 0.597 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.033 0.967 42 H 0.044 0.956 43 H 0.263 0.737 44 H 0.088 0.912 45 H 0.067 0.933 46 H 0.108 0.892 47 H 0.092 0.908 48 H 0.090 0.910 49 H 0.091 0.909 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.900 24.490 -1.636 24.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.242 4.242 5 O -0.283 6.283 6 C 0.401 3.599 7 O -0.452 6.452 8 N -0.370 5.370 9 C 0.030 3.970 10 C -0.196 4.196 11 C 0.298 3.702 12 O -0.414 6.414 13 N -0.324 5.324 14 C 0.127 3.873 15 C -0.564 4.564 16 H 0.076 0.924 17 C -0.141 4.141 18 N -0.533 5.533 19 Si 0.725 3.275 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.209 1.209 23 C 0.017 3.983 24 C -0.185 4.185 25 C -0.223 4.223 26 C -0.213 4.213 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.108 0.892 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.238 0.762 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.115 0.885 40 H 0.112 0.888 41 H 0.051 0.949 42 H 0.062 0.938 43 H 0.072 0.928 44 H 0.106 0.894 45 H 0.086 0.914 46 H 0.127 0.873 47 H 0.111 0.889 48 H 0.108 0.892 49 H 0.110 0.890 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.073 23.777 -2.515 23.999 hybrid contribution 0.960 -0.477 0.046 1.073 sum 3.033 23.300 -2.469 23.626 Atomic orbital electron populations 1.22524 0.93996 1.05257 1.02364 1.22045 0.94390 0.91417 0.82202 1.21858 1.02202 0.92619 1.03038 1.22525 1.01536 1.03720 0.96394 1.86280 1.71727 1.23834 1.46464 1.18048 0.79101 0.80389 0.82387 1.90929 1.40851 1.70303 1.43115 1.44781 1.55645 1.13013 1.23536 1.21083 1.00916 0.77377 0.97633 1.21903 1.02727 0.96270 0.98717 1.19917 0.81049 0.87021 0.82196 1.90717 1.38146 1.70832 1.41680 1.48170 1.49628 1.14054 1.20531 1.19307 0.97070 0.73731 0.97236 1.21454 1.08045 0.91100 1.35840 0.92420 1.24935 0.95781 0.98023 0.95382 1.69944 1.28029 1.11767 1.43568 0.86450 0.81353 0.80482 0.79178 1.19810 1.20999 1.20869 1.21031 0.91833 0.96961 0.88462 1.22946 1.02148 0.94644 0.98712 1.23054 1.02743 0.93374 1.03159 1.22895 1.00072 1.04488 0.93891 0.92209 0.91212 0.89215 0.91510 0.90208 0.91517 0.89199 0.91212 0.92193 0.76245 0.90099 0.90192 0.88482 0.88814 0.94888 0.93798 0.92769 0.89403 0.91431 0.87345 0.88919 0.89160 0.89001 0.88735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.80 8.37 37.16 0.31 -1.49 16 2 C 0.14 1.33 1.13 -90.62 -0.10 1.23 16 3 C -0.14 -0.95 8.85 37.16 0.33 -0.62 16 4 C -0.18 -1.83 8.37 37.16 0.31 -1.52 16 5 O -0.37 -4.29 9.94 -40.31 -0.40 -4.69 16 6 C 0.65 8.77 8.06 54.06 0.44 9.21 16 7 O -0.56 -9.22 11.88 -19.28 -0.23 -9.45 16 8 N -0.71 -8.25 5.56 -65.28 -0.36 -8.62 16 9 C 0.15 2.15 4.96 -4.04 -0.02 2.13 16 10 C -0.16 -2.05 4.37 -27.88 -0.12 -2.17 16 11 C 0.51 10.02 7.67 -10.98 -0.08 9.94 16 12 O -0.54 -13.09 15.56 5.56 0.09 -13.00 16 13 N -0.59 -11.81 2.46 -175.06 -0.43 -12.24 16 14 C 0.25 6.24 5.16 -5.19 -0.03 6.21 16 15 C -0.53 -14.63 9.39 -34.44 -0.32 -14.95 16 16 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 19 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 C 0.14 2.11 5.49 -4.04 -0.02 2.09 16 24 C -0.17 -2.12 5.95 -90.62 -0.54 -2.66 16 25 C -0.19 -1.83 9.18 -26.73 -0.25 -2.07 16 26 C -0.18 -1.81 10.25 -26.73 -0.27 -2.08 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 29 H 0.09 1.13 5.88 -51.93 -0.31 0.82 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.09 1.15 5.88 -51.93 -0.31 0.84 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.40 3.45 8.58 -40.82 -0.35 3.10 16 37 H 0.08 1.32 8.10 -51.93 -0.42 0.90 16 38 H 0.08 1.27 8.10 -51.93 -0.42 0.85 16 39 H 0.10 1.06 6.85 -51.93 -0.36 0.70 16 40 H 0.09 1.04 7.40 -51.93 -0.38 0.66 16 41 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 42 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 43 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.09 1.40 8.07 -51.93 -0.42 0.98 16 45 H 0.07 0.82 6.17 -51.93 -0.32 0.50 16 46 H 0.11 1.60 8.14 -51.93 -0.42 1.18 16 47 H 0.09 0.77 7.87 -51.93 -0.41 0.36 16 48 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.09 0.89 8.14 -51.92 -0.42 0.47 16 50 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 406.30 15.07 6.12 6.12 Total: -1.00 -33.97 406.30 -8.66 -42.63 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -8.69 Total: 3.29 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -0.47 Total: 4.88 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: -0.06 Total: -46.51 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -0.54 Total: -27.14 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.97 -8.66 -42.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491170215.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.107 kcal (2) G-P(sol) polarization free energy of solvation -33.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds