Wall clock time and date at job start Tue Mar 31 2020 14:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.47286 * 2 1 4 4 C 1.53002 * 109.46943 * 240.00405 * 2 1 3 5 5 O 1.45196 * 109.47464 * 120.00304 * 2 1 3 6 6 C 1.34634 * 116.99736 * 59.99328 * 5 2 1 7 7 O 1.21512 * 120.00351 * 0.02562 * 6 5 2 8 8 N 1.34777 * 119.99817 * 180.02562 * 6 5 2 9 9 C 1.46496 * 120.00258 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47421 * 180.02562 * 9 8 6 11 11 C 1.50706 * 109.46925 * 180.02562 * 10 9 8 12 12 O 1.21279 * 120.00072 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99762 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00258 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.46871 * 90.00155 * 14 13 11 16 16 H 1.07998 * 120.00222 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00011 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99586 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99962 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47471 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47050 * 120.00144 * 19 17 15 22 22 H 1.48498 * 109.47220 * 239.99721 * 19 17 15 23 23 C 1.46504 * 119.99858 * 0.02562 * 13 11 10 24 24 C 1.52999 * 109.47507 * 89.99839 * 23 13 11 25 25 C 1.53003 * 117.49748 * 243.62506 * 24 23 13 26 26 C 1.52992 * 117.50002 * 174.99956 * 24 23 13 27 27 H 1.09006 * 109.47113 * 300.00056 * 1 2 3 28 28 H 1.09008 * 109.47148 * 59.99463 * 1 2 3 29 29 H 1.08996 * 109.47296 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47381 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47000 * 300.00340 * 3 2 1 32 32 H 1.09004 * 109.46588 * 60.00001 * 3 2 1 33 33 H 1.08995 * 109.46889 * 299.99648 * 4 2 1 34 34 H 1.08994 * 109.47198 * 59.99893 * 4 2 1 35 35 H 1.08999 * 109.46961 * 179.97438 * 4 2 1 36 36 H 0.97008 * 120.00336 * 0.02562 * 8 6 5 37 37 H 1.09004 * 109.46875 * 60.00324 * 9 8 6 38 38 H 1.09004 * 109.47522 * 300.00473 * 9 8 6 39 39 H 1.09000 * 109.46497 * 60.00401 * 10 9 8 40 40 H 1.09000 * 109.47312 * 300.00180 * 10 9 8 41 41 H 1.09000 * 109.47710 * 210.00590 * 14 13 11 42 42 H 1.09000 * 109.46883 * 330.00634 * 14 13 11 43 43 H 0.97008 * 119.99716 * 180.02562 * 18 17 15 44 44 H 1.09005 * 109.47121 * 209.99861 * 23 13 11 45 45 H 1.08997 * 109.47160 * 329.99513 * 23 13 11 46 46 H 1.09002 * 115.54589 * 29.32423 * 24 23 13 47 47 H 1.08995 * 117.49876 * 359.97438 * 25 24 23 48 48 H 1.09002 * 117.49846 * 145.02378 * 25 24 23 49 49 H 1.09007 * 117.49671 * 214.97834 * 26 24 23 50 50 H 1.09002 * 117.50190 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3382 7 8 0.9514 -2.5096 0.5035 8 7 2.0672 -2.6654 2.4170 9 6 1.6740 -4.0668 2.5830 10 6 2.2730 -4.6145 3.8800 11 6 1.8690 -6.0564 4.0503 12 8 1.1711 -6.5932 3.2163 13 7 2.2841 -6.7496 5.1290 14 6 1.8909 -8.1510 5.2950 15 6 2.9168 -9.0412 4.6421 16 1 3.7759 -8.6065 4.1528 17 6 2.7585 -10.4106 4.6693 18 7 1.7121 -10.9398 5.2647 19 14 4.0297 -11.5139 3.8593 20 1 5.1025 -10.6782 3.2628 21 1 4.6180 -12.4213 4.8771 22 1 3.3795 -12.3196 2.7948 23 6 3.1276 -6.1012 6.1362 24 6 2.2424 -5.4606 7.2072 25 6 2.2971 -3.9383 7.3509 26 6 2.9387 -4.8308 8.4152 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5140 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 -1.7488 -1.2493 34 1 1.6766 -0.2073 -2.1392 35 1 3.1299 -0.7208 -1.2496 36 1 2.6263 -2.2364 3.0836 37 1 2.0412 -4.6497 1.7382 38 1 0.5871 -4.1365 2.6274 39 1 1.9054 -4.0315 4.7244 40 1 3.3599 -4.5449 3.8360 41 1 1.8280 -8.3874 6.3572 42 1 0.9193 -8.3134 4.8285 43 1 1.6009 -11.9033 5.2842 44 1 3.7775 -6.8442 6.5988 45 1 3.7361 -5.3324 5.6602 46 1 1.2826 -5.9484 7.3771 47 1 2.9639 -3.3933 6.6828 48 1 1.3730 -3.4243 7.6156 49 1 2.4367 -4.9040 9.3800 50 1 4.0274 -4.8733 8.4473 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491170215.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:04 Heat of formation + Delta-G solvation = -124.592559 kcal Electronic energy + Delta-G solvation = -28299.099017 eV Core-core repulsion = 24326.271639 eV Total energy + Delta-G solvation = -3972.827378 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.81557 -40.87828 -38.59167 -38.29232 -36.41380 -36.01143 -34.96430 -34.58450 -32.03002 -29.65261 -28.34492 -28.25884 -27.65305 -26.01718 -24.17605 -23.15264 -22.82481 -21.81719 -21.20349 -19.96049 -19.12504 -18.60524 -18.21443 -17.45186 -17.43674 -17.13198 -16.65311 -16.15409 -16.09691 -15.66970 -15.50712 -15.47038 -15.11752 -14.60929 -14.43774 -14.28885 -14.13282 -13.67917 -13.39858 -13.30606 -13.16638 -12.92621 -12.90445 -12.83680 -12.83422 -12.65970 -12.55844 -12.44071 -12.33851 -12.30922 -12.22543 -12.19544 -11.69008 -11.37445 -11.21081 -11.14674 -10.89311 -10.64767 -10.54151 -10.27733 -9.44032 -8.22293 -6.36642 1.08416 1.36066 1.38904 1.50285 1.75819 1.81522 2.27835 2.43825 2.99854 3.07665 3.17535 3.63536 3.78067 3.79962 3.82396 3.94839 3.97551 4.04705 4.10762 4.23789 4.33575 4.49566 4.54158 4.63535 4.71254 4.78202 4.79144 4.80689 4.85811 4.88934 4.91436 4.91780 4.94329 5.03029 5.10581 5.12940 5.23469 5.25441 5.30818 5.37669 5.37932 5.38690 5.57411 5.59004 5.84838 6.06578 6.41406 6.70405 6.79586 7.28513 7.35749 7.47475 8.85116 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.012815 B = 0.002692 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.392107 B =10400.433656 C =11958.621046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.124 3.876 3 C -0.133 4.133 4 C -0.182 4.182 5 O -0.363 6.363 6 C 0.644 3.356 7 O -0.597 6.597 8 N -0.693 5.693 9 C 0.164 3.836 10 C -0.131 4.131 11 C 0.501 3.499 12 O -0.598 6.598 13 N -0.597 5.597 14 C 0.262 3.738 15 C -0.539 4.539 16 H 0.056 0.944 17 C 0.005 3.995 18 N -0.930 5.930 19 Si 0.967 3.033 20 H -0.265 1.265 21 H -0.269 1.269 22 H -0.284 1.284 23 C 0.140 3.860 24 C -0.195 4.195 25 C -0.163 4.163 26 C -0.165 4.165 27 H 0.065 0.935 28 H 0.090 0.910 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.090 0.910 35 H 0.064 0.936 36 H 0.423 0.577 37 H 0.053 0.947 38 H 0.056 0.944 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.021 0.979 42 H -0.005 1.005 43 H 0.266 0.734 44 H 0.072 0.928 45 H 0.108 0.892 46 H 0.077 0.923 47 H 0.121 0.879 48 H 0.097 0.903 49 H 0.095 0.905 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.512 27.820 -1.207 28.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.088 3.912 3 C -0.190 4.190 4 C -0.239 4.239 5 O -0.277 6.277 6 C 0.397 3.603 7 O -0.488 6.488 8 N -0.354 5.354 9 C 0.040 3.960 10 C -0.171 4.171 11 C 0.290 3.710 12 O -0.480 6.480 13 N -0.326 5.326 14 C 0.141 3.859 15 C -0.577 4.577 16 H 0.074 0.926 17 C -0.193 4.193 18 N -0.570 5.570 19 Si 0.791 3.209 20 H -0.189 1.189 21 H -0.194 1.194 22 H -0.210 1.210 23 C 0.018 3.982 24 C -0.214 4.214 25 C -0.199 4.199 26 C -0.202 4.202 27 H 0.084 0.916 28 H 0.109 0.891 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.119 0.881 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.109 0.891 35 H 0.083 0.917 36 H 0.261 0.739 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.150 0.850 40 H 0.149 0.851 41 H 0.039 0.961 42 H 0.013 0.987 43 H 0.075 0.925 44 H 0.091 0.909 45 H 0.126 0.874 46 H 0.095 0.905 47 H 0.139 0.861 48 H 0.116 0.884 49 H 0.113 0.887 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.735 27.177 -2.027 27.661 hybrid contribution 0.086 -1.471 -0.079 1.476 sum 4.820 25.706 -2.107 26.239 Atomic orbital electron populations 1.22487 0.94219 1.03439 1.03731 1.22432 0.94474 0.92895 0.81406 1.21877 1.02537 0.90185 1.04437 1.22491 1.01764 1.02044 0.97641 1.86299 1.71496 1.22545 1.47394 1.18251 0.78750 0.80992 0.82277 1.90933 1.42304 1.71151 1.44413 1.44454 1.55487 1.11834 1.23618 1.20715 0.99520 0.78493 0.97238 1.21765 1.04753 0.91389 0.99196 1.21009 0.79775 0.89367 0.80852 1.90689 1.40816 1.72704 1.43745 1.48136 1.50174 1.12237 1.22091 1.18701 0.94487 0.77253 0.95506 1.21742 1.08256 0.91887 1.35853 0.92598 1.25870 0.97870 0.99683 0.95904 1.70067 1.29870 1.12271 1.44754 0.85374 0.78781 0.78458 0.78242 1.18880 1.19449 1.21034 1.21292 0.91595 0.97299 0.88007 1.22650 1.01109 0.97258 1.00416 1.23226 1.03392 0.90872 1.02455 1.23005 1.00864 1.03051 0.93315 0.91619 0.89088 0.92530 0.90978 0.88050 0.90889 0.92546 0.89073 0.91725 0.73917 0.92827 0.92545 0.85020 0.85150 0.96103 0.98695 0.92493 0.90942 0.87370 0.90494 0.86087 0.88440 0.88676 0.87227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.36 8.37 71.98 0.60 -2.76 16 2 C 0.12 2.22 1.13 -10.79 -0.01 2.21 16 3 C -0.13 -1.39 8.85 71.98 0.64 -0.75 16 4 C -0.18 -3.43 8.37 71.98 0.60 -2.83 16 5 O -0.36 -7.86 9.94 -55.44 -0.55 -8.41 16 6 C 0.64 17.06 8.06 129.79 1.05 18.10 16 7 O -0.60 -20.20 11.88 19.80 0.24 -19.96 16 8 N -0.69 -14.89 5.56 -590.85 -3.29 -18.18 16 9 C 0.16 4.58 4.96 86.38 0.43 5.01 16 10 C -0.13 -3.17 4.37 29.85 0.13 -3.04 16 11 C 0.50 19.97 7.67 87.66 0.67 20.64 16 12 O -0.60 -30.96 15.56 -3.03 -0.05 -31.01 16 13 N -0.60 -24.33 2.46 -826.14 -2.03 -26.36 16 14 C 0.26 14.12 5.16 85.63 0.44 14.56 16 15 C -0.54 -30.99 9.39 25.60 0.24 -30.75 16 16 H 0.06 3.16 7.81 -2.91 -0.02 3.13 16 17 C 0.01 0.32 5.46 84.66 0.46 0.78 16 18 N -0.93 -56.84 13.29 21.45 0.28 -56.56 16 19 Si 0.97 45.23 29.54 68.60 2.03 47.26 16 20 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 22 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 23 C 0.14 4.00 5.49 86.38 0.47 4.48 16 24 C -0.19 -4.73 5.95 -10.80 -0.06 -4.79 16 25 C -0.16 -2.53 9.18 30.60 0.28 -2.25 16 26 C -0.16 -2.89 10.25 30.59 0.31 -2.58 16 27 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 28 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 29 H 0.06 1.46 5.88 -2.39 -0.01 1.44 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.06 1.47 5.88 -2.39 -0.01 1.46 16 34 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.42 5.68 8.58 -92.70 -0.80 4.88 16 37 H 0.05 1.81 8.10 -2.38 -0.02 1.79 16 38 H 0.06 1.86 8.10 -2.39 -0.02 1.84 16 39 H 0.13 2.33 6.85 -2.39 -0.02 2.32 16 40 H 0.13 2.30 7.40 -2.39 -0.02 2.28 16 41 H 0.02 1.15 8.07 -2.39 -0.02 1.13 16 42 H -0.01 -0.32 7.42 -2.39 -0.02 -0.34 16 43 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 44 H 0.07 2.27 8.07 -2.38 -0.02 2.25 16 45 H 0.11 2.17 6.17 -2.39 -0.01 2.15 16 46 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 47 H 0.12 1.24 7.87 -2.39 -0.02 1.22 16 48 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 50 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -81.59 406.30 3.02 -78.57 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 0.13 Total: 18.62 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: 6.26 Total: 16.03 kcal Atomic # 7 Polarization: -96.06 SS G_CDS: -5.03 Total: -101.09 kcal Atomic # 8 Polarization: -59.02 SS G_CDS: -0.36 Total: -59.38 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -81.59 3.02 -78.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491170215.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.024 kcal (2) G-P(sol) polarization free energy of solvation -81.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds