Wall clock time and date at job start Tue Mar 31 2020 14:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37104 * 119.99627 * 2 1 4 4 H 1.08000 * 119.99575 * 204.39412 * 3 2 1 5 5 C 1.38941 * 120.00320 * 24.39683 * 3 2 1 6 6 N 1.31412 * 120.00022 * 12.63907 * 5 3 2 7 7 Si 1.86795 * 120.00278 * 192.64230 * 5 3 2 8 8 H 1.48504 * 109.47341 * 59.99799 * 7 5 3 9 9 H 1.48499 * 109.47478 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47213 * 299.99922 * 7 5 3 11 11 C 1.34776 * 120.00108 * 180.02562 * 2 1 3 12 12 O 1.21293 * 119.99908 * 179.97438 * 11 2 1 13 13 C 1.50695 * 119.99991 * 359.97438 * 11 2 1 14 14 C 1.52996 * 109.47039 * 180.02562 * 13 11 2 15 15 C 1.53004 * 109.47247 * 180.02562 * 14 13 11 16 16 H 1.09000 * 110.91471 * 51.09235 * 15 14 13 17 17 C 1.55155 * 111.00664 * 174.99923 * 15 14 13 18 18 C 1.54319 * 103.10334 * 153.65944 * 17 15 14 19 19 N 1.47017 * 107.27288 * 337.72060 * 18 17 15 20 20 C 1.34774 * 125.64776 * 178.89975 * 19 18 17 21 21 O 1.21513 * 119.99972 * 180.02562 * 20 19 18 22 22 O 1.34635 * 120.00035 * 0.02688 * 20 19 18 23 23 C 1.45201 * 116.99941 * 179.97438 * 22 20 19 24 24 C 1.53005 * 109.46995 * 60.00180 * 23 22 20 25 25 C 1.53002 * 109.47349 * 179.97438 * 23 22 20 26 26 C 1.52997 * 109.47418 * 300.00174 * 23 22 20 27 27 C 1.47417 * 108.70335 * 358.93740 * 19 18 17 28 28 H 1.09005 * 109.47099 * 265.86167 * 1 2 3 29 29 H 1.09004 * 109.47534 * 25.86109 * 1 2 3 30 30 H 1.09000 * 109.46893 * 145.86567 * 1 2 3 31 31 H 0.97001 * 120.00295 * 180.02562 * 6 5 3 32 32 H 1.08992 * 109.47139 * 59.99886 * 13 11 2 33 33 H 1.09008 * 109.46804 * 299.99912 * 13 11 2 34 34 H 1.09001 * 109.47564 * 59.99520 * 14 13 11 35 35 H 1.09008 * 109.47098 * 299.99977 * 14 13 11 36 36 H 1.09006 * 110.71797 * 35.20935 * 17 15 14 37 37 H 1.09000 * 110.72179 * 272.11930 * 17 15 14 38 38 H 1.09006 * 109.87811 * 97.13810 * 18 17 15 39 39 H 1.08993 * 109.88616 * 218.29692 * 18 17 15 40 40 H 1.08997 * 109.47085 * 60.00085 * 24 23 22 41 41 H 1.09001 * 109.47013 * 179.97438 * 24 23 22 42 42 H 1.09000 * 109.46854 * 299.99689 * 24 23 22 43 43 H 1.09004 * 109.46632 * 60.00238 * 25 23 22 44 44 H 1.09001 * 109.47520 * 180.02562 * 25 23 22 45 45 H 1.08997 * 109.47511 * 300.00393 * 25 23 22 46 46 H 1.09000 * 109.47357 * 59.99744 * 26 23 22 47 47 H 1.09001 * 109.47230 * 180.02562 * 26 23 22 48 48 H 1.09000 * 109.47470 * 299.99917 * 26 23 22 49 49 H 1.09002 * 110.36771 * 142.96812 * 27 19 18 50 50 H 1.09006 * 110.36968 * 265.18169 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1874 0.0000 4 1 3.1581 1.2291 -0.3863 5 6 1.5487 2.3369 0.4970 6 7 0.4345 2.2491 1.1882 7 14 2.3235 4.0073 0.1827 8 1 2.4038 4.2483 -1.2805 9 1 1.4932 5.0648 0.8131 10 1 3.6893 4.0369 0.7648 11 6 2.1389 -1.1672 -0.0005 12 8 3.3518 -1.1671 -0.0010 13 6 1.3854 -2.4722 -0.0005 14 6 2.3797 -3.6351 -0.0005 15 6 1.6147 -4.9602 -0.0012 16 1 0.8666 -4.9772 -0.7937 17 6 2.5863 -6.1633 -0.1274 18 6 1.8103 -7.3123 0.5499 19 7 0.8226 -6.7005 1.4507 20 6 -0.0671 -7.3688 2.2111 21 8 -0.8403 -6.7569 2.9212 22 8 -0.0992 -8.7145 2.1839 23 6 -1.0829 -9.3676 3.0290 24 6 -2.4864 -8.9147 2.6215 25 6 -0.9695 -10.8846 2.8649 26 6 -0.8299 -8.9919 4.4903 27 6 0.9659 -5.2348 1.3838 28 1 -0.3633 -0.0742 1.0250 29 1 -0.3634 0.9248 -0.4483 30 1 -0.3633 -0.8506 -0.5767 31 1 0.0143 3.0517 1.5349 32 1 0.7584 -2.5298 -0.8902 33 1 0.7591 -2.5302 0.8898 34 1 3.0064 -3.5774 0.8894 35 1 3.0064 -3.5773 -0.8906 36 1 3.5185 -5.9633 0.4011 37 1 2.7805 -6.3939 -1.1749 38 1 1.3020 -7.9119 -0.2052 39 1 2.4967 -7.9368 1.1217 40 1 -2.6667 -9.1824 1.5804 41 1 -3.2249 -9.4053 3.2556 42 1 -2.5675 -7.8339 2.7381 43 1 0.0304 -11.2076 3.1549 44 1 -1.7083 -11.3749 3.4989 45 1 -1.1500 -11.1520 1.8238 46 1 -0.9110 -7.9111 4.6069 47 1 -1.5681 -9.4825 5.1247 48 1 0.1699 -9.3145 4.7807 49 1 -0.0108 -4.7549 1.4466 50 1 1.6142 -4.8800 2.1851 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000494160152.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:37 Heat of formation + Delta-G solvation = -118.605389 kcal Electronic energy + Delta-G solvation = -28390.384659 eV Core-core repulsion = 24417.816904 eV Total energy + Delta-G solvation = -3972.567755 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.93524 -39.12259 -38.27960 -36.69546 -34.79545 -34.36019 -33.40621 -31.60607 -30.54506 -28.53388 -27.67612 -27.61078 -26.31438 -25.29053 -24.10273 -22.48379 -21.76010 -20.21272 -19.53598 -18.64799 -17.98800 -16.86301 -16.79149 -16.56433 -15.86452 -15.65800 -15.20547 -14.86159 -14.58555 -14.41407 -14.07794 -14.00855 -13.69004 -13.37993 -13.12670 -12.79923 -12.74875 -12.54809 -12.45595 -12.30249 -12.14508 -12.10834 -11.86039 -11.62006 -11.50432 -11.46123 -11.39287 -11.25422 -11.03923 -10.88784 -10.77179 -10.61230 -10.55524 -10.37397 -10.32375 -10.16872 -10.14552 -8.96526 -8.84487 -8.33146 -7.61261 -6.28289 -3.84623 1.95225 2.73985 3.21128 3.26427 3.30300 3.71638 3.95891 4.16813 4.42265 4.44400 4.47203 4.49885 4.64536 4.70104 4.97949 5.12150 5.16563 5.18665 5.21686 5.26992 5.29830 5.41791 5.41959 5.49318 5.51823 5.60870 5.64505 5.68045 5.70920 5.77580 5.78932 5.90437 5.97731 6.01646 6.05987 6.12282 6.14809 6.23339 6.31897 6.45032 6.53524 6.66180 6.89428 7.23592 7.36936 7.60003 8.19134 8.22868 8.53376 9.23554 9.48089 10.04549 10.76725 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.023268 B = 0.002199 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.098383 B =12728.165536 C =13526.187938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.449 5.449 3 C -0.307 4.307 4 H 0.096 0.904 5 C 0.029 3.971 6 N -0.883 5.883 7 Si 0.926 3.074 8 H -0.274 1.274 9 H -0.285 1.285 10 H -0.273 1.273 11 C 0.446 3.554 12 O -0.593 6.593 13 C -0.132 4.132 14 C -0.086 4.086 15 C -0.100 4.100 16 H 0.086 0.914 17 C -0.129 4.129 18 C 0.106 3.894 19 N -0.604 5.604 20 C 0.666 3.334 21 O -0.566 6.566 22 O -0.363 6.363 23 C 0.135 3.865 24 C -0.183 4.183 25 C -0.139 4.139 26 C -0.184 4.184 27 C 0.126 3.874 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.026 0.974 31 H 0.267 0.733 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.066 0.934 44 H 0.079 0.921 45 H 0.066 0.934 46 H 0.088 0.912 47 H 0.069 0.931 48 H 0.059 0.941 49 H 0.084 0.916 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.523 -24.369 0.365 24.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.168 5.168 3 C -0.435 4.435 4 H 0.114 0.886 5 C -0.174 4.174 6 N -0.523 5.523 7 Si 0.753 3.247 8 H -0.200 1.200 9 H -0.210 1.210 10 H -0.198 1.198 11 C 0.235 3.765 12 O -0.478 6.478 13 C -0.172 4.172 14 C -0.124 4.124 15 C -0.119 4.119 16 H 0.105 0.895 17 C -0.166 4.166 18 C -0.017 4.017 19 N -0.345 5.345 20 C 0.421 3.579 21 O -0.456 6.456 22 O -0.278 6.278 23 C 0.098 3.902 24 C -0.241 4.241 25 C -0.197 4.197 26 C -0.241 4.241 27 C 0.005 3.995 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.044 0.956 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.107 0.893 43 H 0.085 0.915 44 H 0.098 0.902 45 H 0.085 0.915 46 H 0.107 0.893 47 H 0.088 0.912 48 H 0.078 0.922 49 H 0.102 0.898 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.425 -24.137 0.773 24.551 hybrid contribution -0.010 0.868 0.050 0.870 sum -4.435 -23.268 0.823 23.702 Atomic orbital electron populations 1.21461 0.81327 0.99801 1.00556 1.43602 1.05436 1.04896 1.62880 1.19580 1.00530 0.84324 1.39024 0.88610 1.25343 0.96679 1.00116 0.95252 1.69986 1.19250 1.29652 1.33379 0.86009 0.79033 0.81061 0.78636 1.19978 1.21002 1.19823 1.20127 0.88067 0.84990 0.83364 1.90500 1.14103 1.87311 1.55920 1.21574 0.98874 0.94069 1.02699 1.21211 0.97158 0.90119 1.03908 1.22576 0.97732 0.95349 0.96228 0.89519 1.22732 0.98658 0.93726 1.01532 1.22040 0.90651 0.96286 0.92679 1.47205 1.35281 1.07746 1.44308 1.17507 0.80127 0.80798 0.79496 1.90916 1.42372 1.68799 1.43471 1.86300 1.57891 1.18946 1.64664 1.22064 0.86786 0.91927 0.89393 1.22519 0.94883 1.04978 1.01681 1.21850 1.03141 0.91531 1.03139 1.22516 1.02095 1.05173 0.94290 1.22516 1.02166 0.76880 0.97910 0.93058 0.90862 0.95594 0.92255 0.90604 0.90399 0.90947 0.90660 0.89983 0.89688 0.91342 0.91346 0.92236 0.91186 0.89276 0.91529 0.90173 0.91529 0.89281 0.91179 0.92240 0.89806 0.90637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.52 8.44 59.85 0.51 3.03 16 2 N -0.45 -11.60 3.01 -122.20 -0.37 -11.97 16 3 C -0.31 -8.64 9.24 -14.93 -0.14 -8.78 16 4 H 0.10 2.82 7.45 -52.49 -0.39 2.42 16 5 C 0.03 0.78 5.04 -17.47 -0.09 0.69 16 6 N -0.88 -23.93 10.83 55.50 0.60 -23.33 16 7 Si 0.93 21.00 29.57 -169.99 -5.03 15.97 16 8 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 11 C 0.45 10.71 7.63 -10.99 -0.08 10.63 16 12 O -0.59 -16.19 15.69 5.55 0.09 -16.10 16 13 C -0.13 -2.27 4.21 -27.89 -0.12 -2.39 16 14 C -0.09 -1.25 4.02 -26.73 -0.11 -1.35 16 15 C -0.10 -1.11 3.02 -88.21 -0.27 -1.38 16 16 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 17 C -0.13 -1.16 6.40 -24.90 -0.16 -1.32 16 18 C 0.11 1.00 6.89 -3.07 -0.02 0.98 16 19 N -0.60 -7.43 3.33 -176.00 -0.59 -8.02 16 20 C 0.67 9.14 7.93 54.05 0.43 9.57 16 21 O -0.57 -9.03 12.14 -19.28 -0.23 -9.26 16 22 O -0.36 -4.33 9.49 -40.31 -0.38 -4.71 16 23 C 0.14 1.31 1.13 -90.62 -0.10 1.21 16 24 C -0.18 -1.75 8.37 37.16 0.31 -1.44 16 25 C -0.14 -0.94 8.85 37.16 0.33 -0.61 16 26 C -0.18 -1.77 8.37 37.16 0.31 -1.46 16 27 C 0.13 1.57 5.90 -2.27 -0.01 1.56 16 28 H 0.05 1.19 7.83 -51.93 -0.41 0.78 16 29 H 0.07 1.74 6.80 -51.93 -0.35 1.39 16 30 H 0.03 0.47 6.61 -51.93 -0.34 0.13 16 31 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 32 H 0.08 1.17 7.41 -51.93 -0.38 0.78 16 33 H 0.08 1.28 7.73 -51.92 -0.40 0.88 16 34 H 0.07 1.14 7.94 -51.93 -0.41 0.73 16 35 H 0.07 1.14 8.10 -51.92 -0.42 0.72 16 36 H 0.08 0.74 8.04 -51.93 -0.42 0.33 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.09 1.09 5.88 -51.93 -0.31 0.79 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.09 1.10 5.88 -51.93 -0.31 0.80 16 47 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 49 H 0.08 1.12 8.04 -51.93 -0.42 0.70 16 50 H 0.08 0.98 7.93 -51.93 -0.41 0.57 16 LS Contribution 394.34 15.07 5.94 5.94 Total: -1.00 -33.03 394.34 -7.93 -40.96 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -8.75 Total: 1.60 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: 0.79 Total: 8.92 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: -0.35 Total: -43.31 kcal Atomic # 8 Polarization: -29.55 SS G_CDS: -0.53 Total: -30.08 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.03 -7.93 -40.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494160152.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.644 kcal (2) G-P(sol) polarization free energy of solvation -33.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds