Wall clock time and date at job start Tue Mar 31 2020 14:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37104 * 119.99627 * 2 1 4 4 H 1.08000 * 119.99575 * 204.39412 * 3 2 1 5 5 C 1.38941 * 120.00320 * 24.39683 * 3 2 1 6 6 N 1.31412 * 120.00022 * 12.63907 * 5 3 2 7 7 Si 1.86795 * 120.00278 * 192.64230 * 5 3 2 8 8 H 1.48504 * 109.47341 * 59.99799 * 7 5 3 9 9 H 1.48499 * 109.47478 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47213 * 299.99922 * 7 5 3 11 11 C 1.34776 * 120.00108 * 180.02562 * 2 1 3 12 12 O 1.21293 * 119.99908 * 179.97438 * 11 2 1 13 13 C 1.50695 * 119.99991 * 359.97438 * 11 2 1 14 14 C 1.52996 * 109.47039 * 180.02562 * 13 11 2 15 15 C 1.53004 * 109.47247 * 180.02562 * 14 13 11 16 16 H 1.09000 * 110.91471 * 51.09235 * 15 14 13 17 17 C 1.55155 * 111.00664 * 174.99923 * 15 14 13 18 18 C 1.54319 * 103.10334 * 153.65944 * 17 15 14 19 19 N 1.47017 * 107.27288 * 337.72060 * 18 17 15 20 20 C 1.34774 * 125.64776 * 178.89975 * 19 18 17 21 21 O 1.21513 * 119.99972 * 180.02562 * 20 19 18 22 22 O 1.34635 * 120.00035 * 0.02688 * 20 19 18 23 23 C 1.45201 * 116.99941 * 179.97438 * 22 20 19 24 24 C 1.53005 * 109.46995 * 60.00180 * 23 22 20 25 25 C 1.53002 * 109.47349 * 179.97438 * 23 22 20 26 26 C 1.52997 * 109.47418 * 300.00174 * 23 22 20 27 27 C 1.47417 * 108.70335 * 358.93740 * 19 18 17 28 28 H 1.09005 * 109.47099 * 265.86167 * 1 2 3 29 29 H 1.09004 * 109.47534 * 25.86109 * 1 2 3 30 30 H 1.09000 * 109.46893 * 145.86567 * 1 2 3 31 31 H 0.97001 * 120.00295 * 180.02562 * 6 5 3 32 32 H 1.08992 * 109.47139 * 59.99886 * 13 11 2 33 33 H 1.09008 * 109.46804 * 299.99912 * 13 11 2 34 34 H 1.09001 * 109.47564 * 59.99520 * 14 13 11 35 35 H 1.09008 * 109.47098 * 299.99977 * 14 13 11 36 36 H 1.09006 * 110.71797 * 35.20935 * 17 15 14 37 37 H 1.09000 * 110.72179 * 272.11930 * 17 15 14 38 38 H 1.09006 * 109.87811 * 97.13810 * 18 17 15 39 39 H 1.08993 * 109.88616 * 218.29692 * 18 17 15 40 40 H 1.08997 * 109.47085 * 60.00085 * 24 23 22 41 41 H 1.09001 * 109.47013 * 179.97438 * 24 23 22 42 42 H 1.09000 * 109.46854 * 299.99689 * 24 23 22 43 43 H 1.09004 * 109.46632 * 60.00238 * 25 23 22 44 44 H 1.09001 * 109.47520 * 180.02562 * 25 23 22 45 45 H 1.08997 * 109.47511 * 300.00393 * 25 23 22 46 46 H 1.09000 * 109.47357 * 59.99744 * 26 23 22 47 47 H 1.09001 * 109.47230 * 180.02562 * 26 23 22 48 48 H 1.09000 * 109.47470 * 299.99917 * 26 23 22 49 49 H 1.09002 * 110.36771 * 142.96812 * 27 19 18 50 50 H 1.09006 * 110.36968 * 265.18169 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1874 0.0000 4 1 3.1581 1.2291 -0.3863 5 6 1.5487 2.3369 0.4970 6 7 0.4345 2.2491 1.1882 7 14 2.3235 4.0073 0.1827 8 1 2.4038 4.2483 -1.2805 9 1 1.4932 5.0648 0.8131 10 1 3.6893 4.0369 0.7648 11 6 2.1389 -1.1672 -0.0005 12 8 3.3518 -1.1671 -0.0010 13 6 1.3854 -2.4722 -0.0005 14 6 2.3797 -3.6351 -0.0005 15 6 1.6147 -4.9602 -0.0012 16 1 0.8666 -4.9772 -0.7937 17 6 2.5863 -6.1633 -0.1274 18 6 1.8103 -7.3123 0.5499 19 7 0.8226 -6.7005 1.4507 20 6 -0.0671 -7.3688 2.2111 21 8 -0.8403 -6.7569 2.9212 22 8 -0.0992 -8.7145 2.1839 23 6 -1.0829 -9.3676 3.0290 24 6 -2.4864 -8.9147 2.6215 25 6 -0.9695 -10.8846 2.8649 26 6 -0.8299 -8.9919 4.4903 27 6 0.9659 -5.2348 1.3838 28 1 -0.3633 -0.0742 1.0250 29 1 -0.3634 0.9248 -0.4483 30 1 -0.3633 -0.8506 -0.5767 31 1 0.0143 3.0517 1.5349 32 1 0.7584 -2.5298 -0.8902 33 1 0.7591 -2.5302 0.8898 34 1 3.0064 -3.5774 0.8894 35 1 3.0064 -3.5773 -0.8906 36 1 3.5185 -5.9633 0.4011 37 1 2.7805 -6.3939 -1.1749 38 1 1.3020 -7.9119 -0.2052 39 1 2.4967 -7.9368 1.1217 40 1 -2.6667 -9.1824 1.5804 41 1 -3.2249 -9.4053 3.2556 42 1 -2.5675 -7.8339 2.7381 43 1 0.0304 -11.2076 3.1549 44 1 -1.7083 -11.3749 3.4989 45 1 -1.1500 -11.1520 1.8238 46 1 -0.9110 -7.9111 4.6069 47 1 -1.5681 -9.4825 5.1247 48 1 0.1699 -9.3145 4.7807 49 1 -0.0108 -4.7549 1.4466 50 1 1.6142 -4.8800 2.1851 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000494160152.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:36 Heat of formation + Delta-G solvation = -138.370749 kcal Electronic energy + Delta-G solvation = -28391.241749 eV Core-core repulsion = 24417.816904 eV Total energy + Delta-G solvation = -3973.424846 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.87220 -40.48694 -39.68852 -37.68151 -36.69120 -35.35801 -34.52533 -33.59526 -31.60013 -29.65027 -28.36250 -28.27933 -28.14952 -26.80238 -25.60343 -23.67888 -22.58010 -21.23563 -20.52187 -20.27692 -18.98005 -18.81574 -17.85070 -17.63696 -17.41298 -16.81776 -16.44457 -16.14101 -16.05098 -15.88331 -15.40756 -14.93441 -14.68785 -14.51025 -14.26799 -13.99407 -13.86180 -13.53334 -13.47619 -13.33038 -13.19602 -13.10405 -13.05334 -12.90291 -12.85797 -12.81800 -12.62693 -12.47171 -12.40800 -12.25901 -12.16825 -12.09529 -11.79988 -11.56612 -11.47249 -11.38833 -11.11508 -10.98488 -10.28970 -9.78928 -9.64215 -8.32680 -5.97808 1.05833 1.39323 1.40364 1.51234 1.72439 2.08146 2.29100 2.88516 3.10036 3.13270 3.53424 3.62310 3.76607 3.80359 3.86548 3.95687 4.09049 4.27744 4.30881 4.39097 4.44453 4.52868 4.58978 4.61934 4.62196 4.73937 4.76851 4.77508 4.81765 4.84692 4.88989 4.91893 4.96648 5.02253 5.06841 5.10859 5.15973 5.27024 5.28719 5.33840 5.36245 5.38552 5.45251 5.46121 5.50280 6.13011 6.41626 6.51022 7.19258 7.24128 7.51832 8.08016 8.70294 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.023268 B = 0.002199 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.098383 B =12728.165536 C =13526.187938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.470 5.470 3 C -0.344 4.344 4 H 0.071 0.929 5 C -0.007 4.007 6 N -0.899 5.899 7 Si 0.989 3.011 8 H -0.266 1.266 9 H -0.272 1.272 10 H -0.277 1.277 11 C 0.435 3.565 12 O -0.634 6.634 13 C -0.121 4.121 14 C -0.076 4.076 15 C -0.086 4.086 16 H 0.103 0.897 17 C -0.120 4.120 18 C 0.105 3.895 19 N -0.607 5.607 20 C 0.659 3.341 21 O -0.596 6.596 22 O -0.363 6.363 23 C 0.123 3.877 24 C -0.179 4.179 25 C -0.133 4.133 26 C -0.180 4.180 27 C 0.124 3.876 28 H 0.039 0.961 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.272 0.728 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.053 0.947 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.109 0.891 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.063 0.937 41 H 0.091 0.909 42 H 0.057 0.943 43 H 0.069 0.931 44 H 0.102 0.898 45 H 0.071 0.929 46 H 0.056 0.944 47 H 0.092 0.908 48 H 0.061 0.939 49 H 0.072 0.928 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.192 -26.345 -0.518 26.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.189 5.189 3 C -0.472 4.472 4 H 0.088 0.912 5 C -0.208 4.208 6 N -0.538 5.538 7 Si 0.813 3.187 8 H -0.191 1.191 9 H -0.196 1.196 10 H -0.203 1.203 11 C 0.226 3.774 12 O -0.522 6.522 13 C -0.160 4.160 14 C -0.114 4.114 15 C -0.105 4.105 16 H 0.121 0.879 17 C -0.158 4.158 18 C -0.016 4.016 19 N -0.348 5.348 20 C 0.415 3.585 21 O -0.488 6.488 22 O -0.278 6.278 23 C 0.087 3.913 24 C -0.237 4.237 25 C -0.190 4.190 26 C -0.237 4.237 27 C 0.003 3.997 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.123 0.877 33 H 0.105 0.895 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.128 0.872 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.110 0.890 42 H 0.076 0.924 43 H 0.088 0.912 44 H 0.121 0.879 45 H 0.090 0.910 46 H 0.075 0.925 47 H 0.110 0.890 48 H 0.080 0.920 49 H 0.090 0.910 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.111 -26.142 -0.122 26.637 hybrid contribution 0.196 1.442 0.380 1.504 sum -4.915 -24.700 0.257 25.186 Atomic orbital electron populations 1.21406 0.79541 1.00776 1.00383 1.43920 1.06718 1.04936 1.63303 1.19566 1.00356 0.86365 1.40924 0.91156 1.26117 0.97127 1.03081 0.94476 1.70066 1.19833 1.30735 1.33181 0.85064 0.77940 0.76841 0.78898 1.19061 1.19608 1.20257 1.21293 0.88055 0.86628 0.81438 1.90461 1.16243 1.88233 1.57283 1.21579 0.99112 0.90974 1.04382 1.21096 0.96581 0.90883 1.02874 1.22409 0.98129 0.94205 0.95727 0.87882 1.22735 0.97826 0.92215 1.03034 1.22214 0.90291 0.96498 0.92611 1.47311 1.35412 1.07708 1.44337 1.17722 0.80075 0.81370 0.79374 1.90905 1.43645 1.69518 1.44724 1.86311 1.58569 1.17800 1.65082 1.22449 0.86344 0.93598 0.88951 1.22469 0.95613 1.03076 1.02493 1.21868 1.04155 0.88910 1.04062 1.22472 1.02996 1.03209 0.95052 1.22462 1.01418 0.77357 0.98503 0.94257 0.92645 0.91196 0.91812 0.87749 0.89460 0.92794 0.90997 0.90122 0.87234 0.89846 0.90498 0.91805 0.89023 0.92389 0.91176 0.87925 0.91022 0.92467 0.88968 0.92014 0.90962 0.91788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.44 8.44 127.77 1.08 6.52 16 2 N -0.47 -24.63 3.01 -658.90 -1.98 -26.62 16 3 C -0.34 -19.94 9.24 84.04 0.78 -19.17 16 4 H 0.07 4.33 7.45 -2.91 -0.02 4.31 16 5 C -0.01 -0.36 5.04 84.92 0.43 0.06 16 6 N -0.90 -49.00 10.83 21.66 0.23 -48.76 16 7 Si 0.99 43.30 29.57 68.60 2.03 45.33 16 8 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 9 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 10 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 11 C 0.44 21.15 7.63 87.66 0.67 21.82 16 12 O -0.63 -35.65 15.69 -3.07 -0.05 -35.70 16 13 C -0.12 -4.03 4.21 29.85 0.13 -3.90 16 14 C -0.08 -2.13 4.02 30.59 0.12 -2.01 16 15 C -0.09 -1.74 3.02 -9.23 -0.03 -1.76 16 16 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 17 C -0.12 -1.86 6.40 31.78 0.20 -1.66 16 18 C 0.11 1.74 6.89 86.73 0.60 2.34 16 19 N -0.61 -14.35 3.33 -941.16 -3.13 -17.48 16 20 C 0.66 17.97 7.93 129.79 1.03 19.00 16 21 O -0.60 -19.57 12.14 19.80 0.24 -19.33 16 22 O -0.36 -8.29 9.49 -55.44 -0.53 -8.82 16 23 C 0.12 2.22 1.13 -10.79 -0.01 2.20 16 24 C -0.18 -3.25 8.37 71.98 0.60 -2.65 16 25 C -0.13 -1.43 8.85 71.98 0.64 -0.79 16 26 C -0.18 -3.35 8.37 71.98 0.60 -2.75 16 27 C 0.12 3.02 5.90 87.03 0.51 3.53 16 28 H 0.04 1.82 7.83 -2.38 -0.02 1.80 16 29 H 0.05 2.63 6.80 -2.39 -0.02 2.62 16 30 H 0.07 2.44 6.61 -2.39 -0.02 2.42 16 31 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 32 H 0.10 2.92 7.41 -2.39 -0.02 2.90 16 33 H 0.09 2.79 7.73 -2.38 -0.02 2.77 16 34 H 0.05 1.71 7.94 -2.39 -0.02 1.69 16 35 H 0.07 2.09 8.10 -2.38 -0.02 2.07 16 36 H 0.08 1.30 8.04 -2.38 -0.02 1.28 16 37 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 39 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.06 1.45 5.88 -2.39 -0.01 1.43 16 43 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 44 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.06 1.46 5.88 -2.39 -0.01 1.45 16 47 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.07 1.92 8.04 -2.39 -0.02 1.90 16 50 H 0.06 1.69 7.93 -2.38 -0.02 1.67 16 Total: -1.00 -74.85 394.34 5.07 -69.78 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: 0.90 Total: 20.81 kcal Atomic # 6 Polarization: 13.44 SS G_CDS: 7.35 Total: 20.79 kcal Atomic # 7 Polarization: -87.98 SS G_CDS: -4.88 Total: -92.86 kcal Atomic # 8 Polarization: -63.52 SS G_CDS: -0.33 Total: -63.85 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -74.85 5.07 -69.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494160152.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.586 kcal (2) G-P(sol) polarization free energy of solvation -74.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds