Wall clock time and date at job start Tue Mar 31 2020 14:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47055 * 2 1 4 4 C 1.53002 * 109.47315 * 239.99511 * 2 1 3 5 5 O 1.45199 * 109.46888 * 119.99838 * 2 1 3 6 6 C 1.34641 * 117.00045 * 60.00162 * 5 2 1 7 7 O 1.21509 * 120.00232 * 0.02562 * 6 5 2 8 8 N 1.34778 * 119.99780 * 179.97438 * 6 5 2 9 9 C 1.46504 * 119.99766 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47054 * 180.02562 * 9 8 6 11 11 C 1.50700 * 109.47382 * 179.97438 * 10 9 8 12 12 O 1.21283 * 119.99658 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00452 * 179.97438 * 11 10 9 14 14 C 1.46926 * 120.63302 * 180.02562 * 13 11 10 15 15 C 1.53191 * 108.89109 * 233.67613 * 14 13 11 16 16 C 1.53035 * 109.31327 * 305.29292 * 15 14 13 17 17 C 1.50709 * 109.45964 * 181.37529 * 16 15 14 18 18 H 1.07997 * 119.99916 * 359.97438 * 17 16 15 19 19 C 1.37872 * 119.99864 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99852 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 120.00061 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47126 * 90.00041 * 21 19 17 23 23 H 1.48500 * 109.47187 * 209.99810 * 21 19 17 24 24 H 1.48499 * 109.47129 * 329.99807 * 21 19 17 25 25 C 1.53038 * 109.54175 * 61.36680 * 16 15 14 26 26 C 1.47207 * 120.81153 * 0.14103 * 13 11 10 27 27 H 1.08992 * 109.47096 * 300.00027 * 1 2 3 28 28 H 1.08998 * 109.47023 * 60.00241 * 1 2 3 29 29 H 1.09009 * 109.46661 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46853 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47009 * 299.99767 * 3 2 1 32 32 H 1.08998 * 109.47230 * 59.99582 * 3 2 1 33 33 H 1.08993 * 109.47520 * 300.00170 * 4 2 1 34 34 H 1.08998 * 109.46874 * 60.00156 * 4 2 1 35 35 H 1.09002 * 109.47191 * 179.97438 * 4 2 1 36 36 H 0.97001 * 120.00234 * 359.97438 * 8 6 5 37 37 H 1.08998 * 109.47360 * 59.99768 * 9 8 6 38 38 H 1.09004 * 109.46849 * 299.99484 * 9 8 6 39 39 H 1.08998 * 109.47350 * 59.99610 * 10 9 8 40 40 H 1.09003 * 109.47457 * 299.99621 * 10 9 8 41 41 H 1.09002 * 109.58861 * 113.81616 * 14 13 11 42 42 H 1.08996 * 109.58519 * 353.53507 * 14 13 11 43 43 H 1.09003 * 109.49975 * 65.24379 * 15 14 13 44 44 H 1.09000 * 109.49553 * 185.30642 * 15 14 13 45 45 H 1.09004 * 109.45942 * 301.34050 * 16 15 14 46 46 H 0.97003 * 119.99843 * 180.02562 * 20 19 17 47 47 H 1.09002 * 109.49557 * 58.58503 * 25 16 15 48 48 H 1.08996 * 109.50003 * 178.68400 * 25 16 15 49 49 H 1.08996 * 109.53610 * 6.53712 * 26 13 11 50 50 H 1.09002 * 109.68003 * 246.23180 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9516 -2.5098 0.5036 8 7 2.0680 -2.6657 2.4168 9 6 1.6748 -4.0672 2.5827 10 6 2.2748 -4.6150 3.8791 11 6 1.8698 -6.0565 4.0503 12 8 1.1706 -6.5929 3.2170 13 7 2.2855 -6.7498 5.1286 14 6 1.8994 -8.1560 5.3090 15 6 1.2569 -8.3207 6.6899 16 6 2.2149 -7.7927 7.7601 17 6 1.6002 -7.9841 9.1227 18 1 0.6239 -8.4365 9.2160 19 6 2.2840 -7.5817 10.2502 20 7 1.7474 -7.7483 11.4393 21 14 3.9729 -6.7999 10.0889 22 1 3.8264 -5.3282 9.9552 23 1 4.7790 -7.1092 11.2971 24 1 4.6559 -7.3407 8.8863 25 6 2.4762 -6.3035 7.5236 26 6 3.1329 -6.1160 6.1519 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6768 -1.7490 -1.2492 34 1 1.6768 -0.2076 -2.1392 35 1 3.1301 -0.7209 -1.2494 36 1 2.6282 -2.2370 3.0826 37 1 2.0413 -4.6499 1.7376 38 1 0.5879 -4.1366 2.6280 39 1 1.9079 -4.0322 4.7240 40 1 3.3616 -4.5455 3.8344 41 1 2.7837 -8.7895 5.2395 42 1 1.1845 -8.4405 4.5370 43 1 0.3243 -7.7576 6.7267 44 1 1.0524 -9.3756 6.8724 45 1 3.1563 -8.3396 7.7065 46 1 2.2284 -7.4648 12.2325 47 1 1.5321 -5.7594 7.5526 48 1 3.1400 -5.9228 8.2997 49 1 3.2311 -5.0522 5.9360 50 1 4.1187 -6.5812 6.1518 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495218088.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:46 Heat of formation + Delta-G solvation = -125.779455 kcal Electronic energy + Delta-G solvation = -28232.061419 eV Core-core repulsion = 24259.182573 eV Total energy + Delta-G solvation = -3972.878846 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.99109 -40.02719 -37.84441 -37.15882 -35.33197 -34.27697 -33.63489 -31.89354 -31.12938 -30.22290 -27.74485 -27.68270 -26.68698 -24.75698 -22.78568 -22.71387 -22.01123 -20.53530 -19.90429 -18.72272 -18.16136 -17.34081 -16.81362 -16.62620 -16.57915 -15.76486 -15.59586 -15.13297 -14.82804 -14.71810 -14.60243 -14.07760 -13.75630 -13.56192 -13.47446 -13.08515 -12.83222 -12.77935 -12.64487 -12.47958 -12.28406 -12.21897 -12.18100 -12.12680 -11.93213 -11.76769 -11.61639 -11.54242 -11.09253 -10.80081 -10.64793 -10.30994 -10.25441 -10.23646 -9.83186 -9.66331 -9.42232 -9.38189 -9.15479 -8.63039 -8.29361 -6.14899 -4.14589 1.88011 2.63981 2.70011 3.13426 3.17112 3.25768 3.31412 3.88908 4.30923 4.38694 4.43090 4.48451 4.57431 4.61890 4.83018 5.06640 5.13018 5.17472 5.20802 5.25292 5.30955 5.35617 5.44081 5.53112 5.53847 5.55688 5.63870 5.65039 5.72752 5.75976 5.77823 5.91140 5.93891 5.98402 6.11324 6.13164 6.22677 6.27991 6.52877 6.57406 6.68434 6.80968 7.11233 7.16541 7.40820 7.59479 7.67476 8.16047 8.26779 8.44415 8.89668 9.46519 10.98468 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.021594 B = 0.002213 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.331097 B =12650.984848 C =13376.934914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.141 4.141 4 C -0.184 4.184 5 O -0.366 6.366 6 C 0.650 3.350 7 O -0.564 6.564 8 N -0.712 5.712 9 C 0.154 3.846 10 C -0.155 4.155 11 C 0.519 3.481 12 O -0.548 6.548 13 N -0.600 5.600 14 C 0.108 3.892 15 C -0.113 4.113 16 C 0.014 3.986 17 C -0.514 4.514 18 H 0.074 0.926 19 C 0.067 3.933 20 N -0.900 5.900 21 Si 0.887 3.113 22 H -0.278 1.278 23 H -0.297 1.297 24 H -0.265 1.265 25 C -0.136 4.136 26 C 0.101 3.899 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.405 0.595 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.062 0.938 42 H 0.084 0.916 43 H 0.059 0.941 44 H 0.069 0.931 45 H 0.028 0.972 46 H 0.264 0.736 47 H 0.066 0.934 48 H 0.059 0.941 49 H 0.074 0.926 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.361 16.076 -20.651 26.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.099 3.901 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.281 6.281 6 C 0.403 3.597 7 O -0.453 6.453 8 N -0.372 5.372 9 C 0.031 3.969 10 C -0.196 4.196 11 C 0.306 3.694 12 O -0.427 6.427 13 N -0.333 5.333 14 C -0.014 4.014 15 C -0.151 4.151 16 C -0.005 4.005 17 C -0.552 4.552 18 H 0.092 0.908 19 C -0.134 4.134 20 N -0.538 5.538 21 Si 0.717 3.283 22 H -0.206 1.206 23 H -0.224 1.224 24 H -0.190 1.190 25 C -0.174 4.174 26 C -0.022 4.022 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.107 0.893 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.240 0.760 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.122 0.878 40 H 0.119 0.881 41 H 0.081 0.919 42 H 0.103 0.897 43 H 0.077 0.923 44 H 0.088 0.912 45 H 0.046 0.954 46 H 0.074 0.926 47 H 0.085 0.915 48 H 0.077 0.923 49 H 0.092 0.908 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.652 15.589 -21.361 26.695 hybrid contribution 1.239 0.765 0.644 1.592 sum 4.891 16.354 -20.717 26.844 Atomic orbital electron populations 1.22525 0.93923 1.05206 1.02505 1.22072 0.94442 0.91473 0.82066 1.21862 1.02232 0.92534 1.03155 1.22521 1.01525 1.03615 0.96453 1.86294 1.71628 1.23662 1.46548 1.18025 0.78972 0.80479 0.82257 1.90925 1.40848 1.70374 1.43138 1.44725 1.55760 1.12859 1.23843 1.21034 1.00989 0.77848 0.97034 1.21837 1.03309 0.94993 0.99421 1.20103 0.80129 0.87764 0.81372 1.90707 1.38394 1.71015 1.42586 1.48195 1.50515 1.12960 1.21608 1.21788 0.99957 0.80248 0.99391 1.21828 0.99342 1.01539 0.92438 1.19133 0.95678 0.90515 0.95135 1.21045 1.05253 1.40563 0.88298 0.90827 1.25066 0.97613 0.95479 0.95284 1.69901 1.38381 1.47622 0.97859 0.86858 0.84898 0.79372 0.77167 1.20556 1.22449 1.18989 1.22395 1.00347 1.01758 0.92937 1.22014 0.93812 0.97103 0.89264 0.92118 0.91134 0.89284 0.91480 0.90127 0.91436 0.89295 0.91137 0.92190 0.75992 0.90172 0.90071 0.87827 0.88120 0.91924 0.89727 0.92256 0.91248 0.95362 0.92624 0.91529 0.92306 0.90753 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.61 8.37 37.16 0.31 -1.30 16 2 C 0.14 1.19 1.13 -90.62 -0.10 1.08 16 3 C -0.14 -0.85 8.85 37.16 0.33 -0.52 16 4 C -0.18 -1.57 8.37 37.16 0.31 -1.26 16 5 O -0.37 -3.84 9.94 -40.33 -0.40 -4.24 16 6 C 0.65 7.71 8.06 54.06 0.44 8.15 16 7 O -0.56 -8.13 11.88 -19.28 -0.23 -8.36 16 8 N -0.71 -6.90 5.56 -65.28 -0.36 -7.26 16 9 C 0.15 1.70 4.96 -4.04 -0.02 1.68 16 10 C -0.16 -1.55 4.17 -27.88 -0.12 -1.67 16 11 C 0.52 7.53 7.70 -10.99 -0.08 7.45 16 12 O -0.55 -9.74 15.39 5.55 0.09 -9.65 16 13 N -0.60 -9.09 2.98 -172.52 -0.51 -9.61 16 14 C 0.11 1.74 6.42 -3.71 -0.02 1.71 16 15 C -0.11 -2.11 5.30 -26.61 -0.14 -2.25 16 16 C 0.01 0.31 1.66 -91.73 -0.15 0.15 16 17 C -0.51 -13.65 9.14 -34.44 -0.31 -13.96 16 18 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 19 C 0.07 1.84 5.45 -17.82 -0.10 1.75 16 20 N -0.90 -26.64 13.96 55.43 0.77 -25.87 16 21 Si 0.89 20.38 24.38 -169.99 -4.14 16.24 16 22 H -0.28 -6.12 6.86 56.52 0.39 -5.73 16 23 H -0.30 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.26 -5.68 6.53 56.52 0.37 -5.31 16 25 C -0.14 -2.56 4.85 -26.59 -0.13 -2.69 16 26 C 0.10 1.44 6.35 -3.54 -0.02 1.42 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.09 1.01 5.88 -51.92 -0.31 0.70 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.99 5.88 -51.93 -0.31 0.68 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.41 2.84 8.58 -40.82 -0.35 2.49 16 37 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 38 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 39 H 0.10 0.90 7.70 -51.93 -0.40 0.50 16 40 H 0.10 0.77 7.95 -51.93 -0.41 0.36 16 41 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.08 1.38 7.00 -51.93 -0.36 1.01 16 43 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.03 0.62 7.20 -51.93 -0.37 0.24 16 46 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 47 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 48 H 0.06 1.17 3.24 -51.93 -0.17 1.00 16 49 H 0.07 0.82 5.97 -51.93 -0.31 0.51 16 50 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 384.99 15.07 5.80 5.80 Total: -1.00 -32.55 384.99 -7.31 -39.87 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -8.50 Total: 3.34 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 0.18 Total: -0.26 kcal Atomic # 7 Polarization: -42.63 SS G_CDS: -0.10 Total: -42.74 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -0.54 Total: -22.25 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.14 Total: 16.24 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.55 -7.31 -39.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495218088.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.913 kcal (2) G-P(sol) polarization free energy of solvation -32.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds