Wall clock time and date at job start Tue Mar 31 2020 14:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47055 * 2 1 4 4 C 1.53002 * 109.47315 * 239.99511 * 2 1 3 5 5 O 1.45199 * 109.46888 * 119.99838 * 2 1 3 6 6 C 1.34641 * 117.00045 * 60.00162 * 5 2 1 7 7 O 1.21509 * 120.00232 * 0.02562 * 6 5 2 8 8 N 1.34778 * 119.99780 * 179.97438 * 6 5 2 9 9 C 1.46504 * 119.99766 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47054 * 180.02562 * 9 8 6 11 11 C 1.50700 * 109.47382 * 179.97438 * 10 9 8 12 12 O 1.21283 * 119.99658 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00452 * 179.97438 * 11 10 9 14 14 C 1.46926 * 120.63302 * 180.02562 * 13 11 10 15 15 C 1.53191 * 108.89109 * 233.67613 * 14 13 11 16 16 C 1.53035 * 109.31327 * 305.29292 * 15 14 13 17 17 C 1.50709 * 109.45964 * 181.37529 * 16 15 14 18 18 H 1.07997 * 119.99916 * 359.97438 * 17 16 15 19 19 C 1.37872 * 119.99864 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99852 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 120.00061 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47126 * 90.00041 * 21 19 17 23 23 H 1.48500 * 109.47187 * 209.99810 * 21 19 17 24 24 H 1.48499 * 109.47129 * 329.99807 * 21 19 17 25 25 C 1.53038 * 109.54175 * 61.36680 * 16 15 14 26 26 C 1.47207 * 120.81153 * 0.14103 * 13 11 10 27 27 H 1.08992 * 109.47096 * 300.00027 * 1 2 3 28 28 H 1.08998 * 109.47023 * 60.00241 * 1 2 3 29 29 H 1.09009 * 109.46661 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46853 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47009 * 299.99767 * 3 2 1 32 32 H 1.08998 * 109.47230 * 59.99582 * 3 2 1 33 33 H 1.08993 * 109.47520 * 300.00170 * 4 2 1 34 34 H 1.08998 * 109.46874 * 60.00156 * 4 2 1 35 35 H 1.09002 * 109.47191 * 179.97438 * 4 2 1 36 36 H 0.97001 * 120.00234 * 359.97438 * 8 6 5 37 37 H 1.08998 * 109.47360 * 59.99768 * 9 8 6 38 38 H 1.09004 * 109.46849 * 299.99484 * 9 8 6 39 39 H 1.08998 * 109.47350 * 59.99610 * 10 9 8 40 40 H 1.09003 * 109.47457 * 299.99621 * 10 9 8 41 41 H 1.09002 * 109.58861 * 113.81616 * 14 13 11 42 42 H 1.08996 * 109.58519 * 353.53507 * 14 13 11 43 43 H 1.09003 * 109.49975 * 65.24379 * 15 14 13 44 44 H 1.09000 * 109.49553 * 185.30642 * 15 14 13 45 45 H 1.09004 * 109.45942 * 301.34050 * 16 15 14 46 46 H 0.97003 * 119.99843 * 180.02562 * 20 19 17 47 47 H 1.09002 * 109.49557 * 58.58503 * 25 16 15 48 48 H 1.08996 * 109.50003 * 178.68400 * 25 16 15 49 49 H 1.08996 * 109.53610 * 6.53712 * 26 13 11 50 50 H 1.09002 * 109.68003 * 246.23180 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9516 -2.5098 0.5036 8 7 2.0680 -2.6657 2.4168 9 6 1.6748 -4.0672 2.5827 10 6 2.2748 -4.6150 3.8791 11 6 1.8698 -6.0565 4.0503 12 8 1.1706 -6.5929 3.2170 13 7 2.2855 -6.7498 5.1286 14 6 1.8994 -8.1560 5.3090 15 6 1.2569 -8.3207 6.6899 16 6 2.2149 -7.7927 7.7601 17 6 1.6002 -7.9841 9.1227 18 1 0.6239 -8.4365 9.2160 19 6 2.2840 -7.5817 10.2502 20 7 1.7474 -7.7483 11.4393 21 14 3.9729 -6.7999 10.0889 22 1 3.8264 -5.3282 9.9552 23 1 4.7790 -7.1092 11.2971 24 1 4.6559 -7.3407 8.8863 25 6 2.4762 -6.3035 7.5236 26 6 3.1329 -6.1160 6.1519 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6768 -1.7490 -1.2492 34 1 1.6768 -0.2076 -2.1392 35 1 3.1301 -0.7209 -1.2494 36 1 2.6282 -2.2370 3.0826 37 1 2.0413 -4.6499 1.7376 38 1 0.5879 -4.1366 2.6280 39 1 1.9079 -4.0322 4.7240 40 1 3.3616 -4.5455 3.8344 41 1 2.7837 -8.7895 5.2395 42 1 1.1845 -8.4405 4.5370 43 1 0.3243 -7.7576 6.7267 44 1 1.0524 -9.3756 6.8724 45 1 3.1563 -8.3396 7.7065 46 1 2.2284 -7.4648 12.2325 47 1 1.5321 -5.7594 7.5526 48 1 3.1400 -5.9228 8.2997 49 1 3.2311 -5.0522 5.9360 50 1 4.1187 -6.5812 6.1518 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495218088.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:45 Heat of formation + Delta-G solvation = -149.179023 kcal Electronic energy + Delta-G solvation = -28233.076100 eV Core-core repulsion = 24259.182573 eV Total energy + Delta-G solvation = -3973.893528 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.82635 -41.20003 -38.83713 -38.34685 -36.27074 -35.31111 -34.98193 -33.51618 -32.45690 -31.34161 -28.34949 -28.30771 -28.26711 -25.89057 -24.18830 -24.05823 -22.92083 -21.60526 -21.05934 -19.85321 -19.11633 -18.85403 -18.30991 -17.50169 -17.46109 -16.80926 -16.69899 -16.53061 -15.90802 -15.58816 -15.51348 -15.23661 -14.97856 -14.88474 -14.65855 -14.40206 -14.09133 -14.03610 -13.65689 -13.53965 -13.32953 -13.16707 -12.93534 -12.85368 -12.84526 -12.71617 -12.66764 -12.34231 -12.31881 -12.24107 -12.07731 -11.78116 -11.47519 -11.38018 -11.20455 -11.13996 -11.00006 -10.79690 -10.61446 -10.27603 -9.58272 -8.25763 -6.31479 1.08293 1.34057 1.42838 1.53321 1.60769 1.75152 2.06852 2.37714 3.09012 3.12413 3.58406 3.69413 3.77142 3.81655 3.96712 4.03073 4.06373 4.15113 4.25581 4.30766 4.44512 4.48388 4.53665 4.63097 4.63927 4.70606 4.78524 4.78946 4.80273 4.84925 4.85304 4.90242 4.93231 4.98137 5.07198 5.09028 5.15102 5.23450 5.29830 5.36917 5.41323 5.58649 5.58932 5.69643 5.77770 6.33569 6.38325 6.47235 6.76006 7.13957 7.34142 7.34609 8.91430 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.021594 B = 0.002213 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.331097 B =12650.984848 C =13376.934914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.124 3.876 3 C -0.135 4.135 4 C -0.180 4.180 5 O -0.366 6.366 6 C 0.644 3.356 7 O -0.596 6.596 8 N -0.697 5.697 9 C 0.162 3.838 10 C -0.142 4.142 11 C 0.516 3.484 12 O -0.588 6.588 13 N -0.604 5.604 14 C 0.116 3.884 15 C -0.107 4.107 16 C 0.013 3.987 17 C -0.522 4.522 18 H 0.022 0.978 19 C 0.001 3.999 20 N -0.956 5.956 21 Si 0.956 3.044 22 H -0.255 1.255 23 H -0.308 1.308 24 H -0.232 1.232 25 C -0.135 4.135 26 C 0.106 3.894 27 H 0.062 0.938 28 H 0.090 0.910 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.090 0.910 35 H 0.064 0.936 36 H 0.422 0.578 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.128 0.872 40 H 0.139 0.861 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.040 0.960 44 H 0.061 0.939 45 H 0.033 0.967 46 H 0.264 0.736 47 H 0.055 0.945 48 H 0.055 0.945 49 H 0.121 0.879 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.532 19.014 -22.412 30.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.088 3.912 3 C -0.192 4.192 4 C -0.237 4.237 5 O -0.280 6.280 6 C 0.397 3.603 7 O -0.486 6.486 8 N -0.358 5.358 9 C 0.039 3.961 10 C -0.182 4.182 11 C 0.305 3.695 12 O -0.469 6.469 13 N -0.336 5.336 14 C -0.007 4.007 15 C -0.146 4.146 16 C -0.006 4.006 17 C -0.560 4.560 18 H 0.040 0.960 19 C -0.195 4.195 20 N -0.597 5.597 21 Si 0.781 3.219 22 H -0.181 1.181 23 H -0.236 1.236 24 H -0.155 1.155 25 C -0.173 4.173 26 C -0.016 4.016 27 H 0.081 0.919 28 H 0.109 0.891 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.119 0.881 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.108 0.892 35 H 0.083 0.917 36 H 0.260 0.740 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.146 0.854 40 H 0.157 0.843 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.058 0.942 44 H 0.080 0.920 45 H 0.051 0.949 46 H 0.073 0.927 47 H 0.074 0.926 48 H 0.073 0.927 49 H 0.139 0.861 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.838 18.555 -23.134 30.434 hybrid contribution 0.079 -0.228 1.195 1.219 sum 6.917 18.327 -21.939 29.412 Atomic orbital electron populations 1.22487 0.94250 1.03515 1.03619 1.22417 0.94420 0.92822 0.81515 1.21881 1.02543 0.90446 1.04332 1.22476 1.01759 1.02099 0.97413 1.86308 1.71501 1.22801 1.47407 1.18265 0.78744 0.80930 0.82353 1.90923 1.42230 1.71100 1.44388 1.44529 1.55437 1.12209 1.23629 1.20786 0.99585 0.78402 0.97356 1.21816 1.05543 0.91593 0.99248 1.20843 0.79005 0.89233 0.80406 1.90703 1.40019 1.72199 1.43944 1.48266 1.50753 1.12452 1.22164 1.21591 1.00359 0.81873 0.96838 1.21701 0.98317 1.00683 0.93855 1.19105 0.95696 0.93230 0.92564 1.21398 1.03503 1.39560 0.91565 0.95970 1.26096 1.02700 0.96217 0.94492 1.70095 1.40765 1.49810 0.99023 0.85747 0.78707 0.79562 0.77853 1.18072 1.23598 1.15499 1.22240 1.00391 0.98686 0.96032 1.22106 0.93466 1.00162 0.85873 0.91914 0.89126 0.92277 0.90977 0.88060 0.91165 0.92235 0.89165 0.91696 0.74032 0.91820 0.92562 0.85400 0.84267 0.90135 0.90267 0.94161 0.92022 0.94881 0.92721 0.92638 0.92684 0.86117 0.89618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.00 8.37 71.98 0.60 -2.40 16 2 C 0.12 1.96 1.13 -10.79 -0.01 1.95 16 3 C -0.14 -1.24 8.85 71.98 0.64 -0.60 16 4 C -0.18 -2.86 8.37 71.98 0.60 -2.26 16 5 O -0.37 -7.07 9.94 -55.50 -0.55 -7.62 16 6 C 0.64 14.65 8.06 129.79 1.05 15.70 16 7 O -0.60 -17.42 11.88 19.81 0.24 -17.18 16 8 N -0.70 -11.91 5.56 -590.84 -3.29 -15.19 16 9 C 0.16 3.30 4.96 86.38 0.43 3.73 16 10 C -0.14 -2.24 4.17 29.85 0.12 -2.11 16 11 C 0.52 13.53 7.70 87.66 0.68 14.21 16 12 O -0.59 -20.35 15.39 -3.04 -0.05 -20.40 16 13 N -0.60 -16.30 2.98 -818.12 -2.44 -18.75 16 14 C 0.12 3.54 6.42 86.36 0.55 4.10 16 15 C -0.11 -4.02 5.30 30.67 0.16 -3.86 16 16 C 0.01 0.54 1.66 -11.51 -0.02 0.52 16 17 C -0.52 -28.68 9.14 25.60 0.23 -28.45 16 18 H 0.02 1.38 7.99 -2.91 -0.02 1.36 16 19 C 0.00 0.05 5.45 84.65 0.46 0.52 16 20 N -0.96 -58.87 13.96 21.45 0.30 -58.57 16 21 Si 0.96 40.87 24.38 68.60 1.67 42.54 16 22 H -0.26 -9.92 6.86 99.48 0.68 -9.24 16 23 H -0.31 -13.63 7.11 99.48 0.71 -12.92 16 24 H -0.23 -8.61 6.53 99.48 0.65 -7.96 16 25 C -0.14 -4.67 4.85 30.68 0.15 -4.52 16 26 C 0.11 2.48 6.35 86.32 0.55 3.03 16 27 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.06 1.36 5.88 -2.38 -0.01 1.35 16 30 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.06 1.33 5.88 -2.39 -0.01 1.31 16 34 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.42 4.32 8.58 -92.71 -0.80 3.53 16 37 H 0.06 1.53 8.10 -2.39 -0.02 1.51 16 38 H 0.06 1.44 8.10 -2.39 -0.02 1.42 16 39 H 0.13 1.51 7.70 -2.39 -0.02 1.49 16 40 H 0.14 1.23 7.95 -2.39 -0.02 1.21 16 41 H 0.08 2.19 8.14 -2.39 -0.02 2.18 16 42 H 0.08 2.53 7.00 -2.39 -0.02 2.51 16 43 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 45 H 0.03 1.36 7.20 -2.39 -0.02 1.35 16 46 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 47 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 48 H 0.06 1.95 3.24 -2.39 -0.01 1.95 16 49 H 0.12 1.77 5.97 -2.39 -0.01 1.76 16 50 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -77.21 384.99 2.13 -75.08 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 0.06 Total: 20.56 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: 6.20 Total: -0.46 kcal Atomic # 7 Polarization: -87.09 SS G_CDS: -5.43 Total: -92.51 kcal Atomic # 8 Polarization: -44.84 SS G_CDS: -0.36 Total: -45.20 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 1.67 Total: 42.54 kcal Total: -77.21 2.13 -75.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495218088.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.103 kcal (2) G-P(sol) polarization free energy of solvation -77.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds