Wall clock time and date at job start Tue Mar 31 2020 14:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47000 * 2 1 4 4 C 1.52992 * 109.46783 * 239.99886 * 2 1 3 5 5 O 1.45199 * 109.47073 * 119.99750 * 2 1 3 6 6 C 1.34638 * 117.00029 * 59.99837 * 5 2 1 7 7 O 1.21520 * 119.99580 * 0.02562 * 6 5 2 8 8 N 1.34773 * 120.00571 * 179.97438 * 6 5 2 9 9 C 1.46493 * 120.00646 * 179.97438 * 8 6 5 10 10 C 1.50695 * 109.47443 * 270.00265 * 9 8 6 11 11 O 1.21287 * 120.00082 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00464 * 179.97438 * 10 9 8 13 13 C 1.46496 * 120.00290 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47067 * 179.97438 * 13 12 10 15 15 C 1.50708 * 109.47199 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99572 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99952 * 179.97438 * 15 14 13 18 18 N 1.31524 * 120.00067 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99999 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47197 * 90.00264 * 19 17 15 21 21 H 1.48504 * 109.47291 * 210.00433 * 19 17 15 22 22 H 1.48500 * 109.47202 * 330.00360 * 19 17 15 23 23 C 1.46505 * 119.99455 * 0.02562 * 8 6 5 24 24 C 1.52997 * 109.47212 * 90.00023 * 23 8 6 25 25 C 1.53000 * 117.50165 * 243.62151 * 24 23 8 26 26 C 1.52994 * 59.99907 * 252.50793 * 25 24 23 27 27 H 1.09003 * 109.47288 * 300.00241 * 1 2 3 28 28 H 1.09002 * 109.47030 * 59.99747 * 1 2 3 29 29 H 1.08995 * 109.47618 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47102 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47435 * 300.00004 * 3 2 1 32 32 H 1.09000 * 109.47763 * 59.99969 * 3 2 1 33 33 H 1.08997 * 109.47536 * 299.99647 * 4 2 1 34 34 H 1.08998 * 109.47737 * 60.00253 * 4 2 1 35 35 H 1.09004 * 109.47022 * 180.02562 * 4 2 1 36 36 H 1.09006 * 109.46911 * 30.00087 * 9 8 6 37 37 H 1.08996 * 109.47170 * 149.99599 * 9 8 6 38 38 H 0.97007 * 119.99577 * 359.97438 * 12 10 9 39 39 H 1.08996 * 109.47076 * 299.99915 * 13 12 10 40 40 H 1.09008 * 109.47146 * 60.00159 * 13 12 10 41 41 H 1.08996 * 109.47342 * 300.00045 * 14 13 12 42 42 H 1.09006 * 109.47211 * 60.00505 * 14 13 12 43 43 H 0.97003 * 119.99739 * 179.97438 * 18 17 15 44 44 H 1.09002 * 109.47068 * 210.00083 * 23 8 6 45 45 H 1.09001 * 109.47372 * 330.00170 * 23 8 6 46 46 H 1.09003 * 115.54795 * 29.32516 * 24 23 8 47 47 H 1.09001 * 117.49810 * 359.97438 * 25 24 23 48 48 H 1.08995 * 117.50134 * 145.01745 * 25 24 23 49 49 H 1.09004 * 117.49933 * 252.50827 * 26 25 24 50 50 H 1.09002 * 117.49788 * 107.49222 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3384 7 8 0.9515 -2.5096 0.5036 8 7 2.0680 -2.6657 2.4167 9 6 1.6739 -4.0667 2.5833 10 6 0.3793 -4.1365 3.3515 11 8 -0.1608 -3.1163 3.7237 12 7 -0.1785 -5.3326 3.6250 13 6 -1.4367 -5.4004 4.3723 14 6 -1.8489 -6.8637 4.5451 15 6 -3.1430 -6.9335 5.3144 16 1 -3.6235 -6.0250 5.6464 17 6 -3.7140 -8.1570 5.5933 18 7 -3.1291 -9.2633 5.1885 19 14 -5.3183 -8.2436 6.5462 20 1 -6.4601 -8.2060 5.5976 21 1 -5.3636 -9.5069 7.3256 22 1 -5.4065 -7.0868 7.4731 23 6 2.9132 -2.0179 3.4229 24 6 2.0297 -1.3765 4.4947 25 6 2.0856 0.1458 4.6383 26 6 2.7277 -0.7471 5.7019 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6767 -1.7489 -1.2492 34 1 1.6767 -0.2075 -2.1392 35 1 3.1300 -0.7217 -1.2490 36 1 1.5401 -4.5255 1.6036 37 1 2.4507 -4.6000 3.1312 38 1 0.2533 -6.1486 3.3270 39 1 -1.3024 -4.9423 5.3522 40 1 -2.2136 -4.8666 3.8249 41 1 -1.9833 -7.3214 3.5651 42 1 -1.0722 -7.3979 5.0923 43 1 -3.5306 -10.1242 5.3851 44 1 3.5629 -2.7613 3.8847 45 1 3.5217 -1.2495 2.9460 46 1 1.0696 -1.8635 4.6658 47 1 2.7522 0.6902 3.9695 48 1 1.1623 0.6605 4.9039 49 1 2.2268 -0.8198 6.6673 50 1 3.8164 -0.7900 5.7326 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495263428.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:26 Heat of formation + Delta-G solvation = -99.412953 kcal Electronic energy + Delta-G solvation = -29033.669618 eV Core-core repulsion = 25061.934109 eV Total energy + Delta-G solvation = -3971.735509 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.97861 -39.38164 -37.83857 -37.01233 -35.11251 -34.73412 -33.94387 -32.85264 -30.18138 -28.43128 -27.59113 -27.48675 -26.77753 -24.63166 -22.37473 -22.31989 -20.98120 -20.87477 -20.25529 -19.30833 -18.10067 -17.14397 -16.88546 -16.37197 -15.92727 -15.77111 -15.35003 -15.04570 -14.71582 -14.56647 -14.33286 -14.20658 -14.16098 -13.53282 -13.34124 -13.13829 -12.78814 -12.67769 -12.42129 -12.29568 -12.09207 -12.03761 -11.95197 -11.73867 -11.54178 -11.46380 -11.42037 -11.20887 -11.03242 -10.65031 -10.46895 -10.43036 -10.28128 -10.12921 -9.87471 -9.85268 -9.59489 -9.30291 -8.72997 -8.53953 -8.35144 -6.09693 -4.12448 1.97668 2.81854 2.96303 3.29357 3.35391 3.39238 3.54074 3.74043 3.93456 4.41747 4.56328 4.60181 4.68859 4.75291 4.80012 4.92917 5.03419 5.10926 5.23378 5.25043 5.27432 5.27618 5.35777 5.37953 5.47545 5.50432 5.57594 5.61499 5.63967 5.73130 5.80846 5.88329 6.07893 6.11249 6.18154 6.27029 6.33514 6.35801 6.38477 6.48715 6.74310 6.94381 7.25147 7.51431 7.61647 7.88468 7.98493 8.26927 8.31457 8.64577 8.93492 9.52417 11.01891 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.015716 B = 0.002634 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.217481 B =10627.265233 C =11352.795081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.136 3.864 3 C -0.139 4.139 4 C -0.183 4.183 5 O -0.357 6.357 6 C 0.662 3.338 7 O -0.565 6.565 8 N -0.575 5.575 9 C 0.110 3.890 10 C 0.488 3.512 11 O -0.536 6.536 12 N -0.720 5.720 13 C 0.124 3.876 14 C 0.013 3.987 15 C -0.521 4.521 16 H 0.059 0.941 17 C 0.059 3.941 18 N -0.894 5.894 19 Si 0.896 3.104 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.273 1.273 23 C 0.149 3.851 24 C -0.181 4.181 25 C -0.172 4.172 26 C -0.181 4.181 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.116 0.884 37 H 0.112 0.888 38 H 0.398 0.602 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.023 0.977 42 H 0.022 0.978 43 H 0.262 0.738 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.138 0.862 47 H 0.091 0.909 48 H 0.089 0.911 49 H 0.092 0.908 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.454 18.150 -8.701 26.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.099 3.901 3 C -0.196 4.196 4 C -0.240 4.240 5 O -0.271 6.271 6 C 0.418 3.582 7 O -0.454 6.454 8 N -0.313 5.313 9 C -0.016 4.016 10 C 0.272 3.728 11 O -0.414 6.414 12 N -0.370 5.370 13 C 0.002 3.998 14 C -0.025 4.025 15 C -0.560 4.560 16 H 0.077 0.923 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.724 3.276 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.198 1.198 23 C 0.026 3.974 24 C -0.200 4.200 25 C -0.209 4.209 26 C -0.218 4.218 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.107 0.893 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.107 0.893 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.134 0.866 37 H 0.130 0.870 38 H 0.231 0.769 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.041 0.959 42 H 0.041 0.959 43 H 0.072 0.928 44 H 0.101 0.899 45 H 0.103 0.897 46 H 0.155 0.845 47 H 0.110 0.890 48 H 0.107 0.893 49 H 0.111 0.889 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 16.818 18.597 -8.748 26.556 hybrid contribution -0.830 -0.567 0.441 1.097 sum 15.989 18.030 -8.307 25.490 Atomic orbital electron populations 1.22498 0.93892 1.05312 1.02324 1.22038 0.94523 0.91403 0.82140 1.21839 1.01960 0.92724 1.03088 1.22516 1.01280 1.03650 0.96550 1.86300 1.71346 1.23361 1.46109 1.17842 0.78065 0.80551 0.81784 1.90904 1.40481 1.70335 1.43660 1.46206 1.52779 1.10986 1.21377 1.21386 0.95911 0.81269 1.03041 1.20994 0.87002 0.84291 0.80503 1.90587 1.63571 1.34174 1.53084 1.46286 1.26276 1.07561 1.56905 1.21700 0.82595 1.01276 0.94261 1.19323 0.96958 0.88477 0.97712 1.21050 1.06840 0.92664 1.35452 0.92314 1.24992 0.97722 0.95670 0.95893 1.69959 1.39410 0.97584 1.46354 0.86518 0.83564 0.77519 0.79995 1.20549 1.21149 1.19750 1.21194 0.91018 0.97153 0.88025 1.23263 1.03270 0.95945 0.97510 1.22909 1.02511 0.93252 1.02244 1.22908 0.99517 1.05230 0.94160 0.92073 0.91389 0.89280 0.91659 0.90293 0.91440 0.89337 0.91270 0.92349 0.86632 0.86982 0.76867 0.92641 0.92674 0.95909 0.95925 0.92843 0.89884 0.89695 0.84475 0.89023 0.89287 0.88937 0.89108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.15 8.37 37.16 0.31 -1.84 16 2 C 0.14 1.45 1.13 -90.62 -0.10 1.35 16 3 C -0.14 -1.06 8.85 37.16 0.33 -0.73 16 4 C -0.18 -1.81 8.37 37.15 0.31 -1.50 16 5 O -0.36 -4.52 8.71 -40.32 -0.35 -4.87 16 6 C 0.66 9.57 7.70 54.05 0.42 9.98 16 7 O -0.56 -9.39 11.46 -19.29 -0.22 -9.61 16 8 N -0.58 -7.29 2.03 -180.87 -0.37 -7.65 16 9 C 0.11 1.32 5.93 -5.20 -0.03 1.28 16 10 C 0.49 8.00 7.90 -10.99 -0.09 7.92 16 11 O -0.54 -10.69 13.50 5.55 0.07 -10.61 16 12 N -0.72 -12.17 5.56 -60.30 -0.33 -12.51 16 13 C 0.12 2.63 5.61 -4.05 -0.02 2.60 16 14 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 15 C -0.52 -14.50 9.11 -34.44 -0.31 -14.82 16 16 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 19 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 C 0.15 1.54 5.74 -4.04 -0.02 1.52 16 24 C -0.18 -2.21 5.92 -90.62 -0.54 -2.75 16 25 C -0.17 -1.87 10.18 -26.73 -0.27 -2.14 16 26 C -0.18 -1.81 10.25 -26.74 -0.27 -2.08 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.09 1.33 5.88 -51.93 -0.31 1.02 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.09 1.10 5.88 -51.93 -0.31 0.80 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.12 1.34 7.42 -51.93 -0.39 0.95 16 37 H 0.11 0.92 7.89 -51.93 -0.41 0.51 16 38 H 0.40 5.67 8.47 -40.82 -0.35 5.33 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.05 1.25 8.14 -51.92 -0.42 0.82 16 41 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 44 H 0.08 0.67 7.89 -51.93 -0.41 0.26 16 45 H 0.08 0.80 7.11 -51.93 -0.37 0.43 16 46 H 0.14 2.22 5.08 -51.93 -0.26 1.95 16 47 H 0.09 0.89 8.03 -51.93 -0.42 0.47 16 48 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 49 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 50 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 404.70 15.07 6.10 6.10 Total: -1.00 -33.46 404.70 -8.59 -42.05 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -8.67 Total: 5.52 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -0.53 Total: 0.54 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: 0.04 Total: -45.55 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -0.50 Total: -25.10 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.46 -8.59 -42.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495263428.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.363 kcal (2) G-P(sol) polarization free energy of solvation -33.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds