Wall clock time and date at job start Tue Mar 31 2020 14:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47000 * 2 1 4 4 C 1.52992 * 109.46783 * 239.99886 * 2 1 3 5 5 O 1.45199 * 109.47073 * 119.99750 * 2 1 3 6 6 C 1.34638 * 117.00029 * 59.99837 * 5 2 1 7 7 O 1.21520 * 119.99580 * 0.02562 * 6 5 2 8 8 N 1.34773 * 120.00571 * 179.97438 * 6 5 2 9 9 C 1.46493 * 120.00646 * 179.97438 * 8 6 5 10 10 C 1.50695 * 109.47443 * 270.00265 * 9 8 6 11 11 O 1.21287 * 120.00082 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00464 * 179.97438 * 10 9 8 13 13 C 1.46496 * 120.00290 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47067 * 179.97438 * 13 12 10 15 15 C 1.50708 * 109.47199 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99572 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99952 * 179.97438 * 15 14 13 18 18 N 1.31524 * 120.00067 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99999 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47197 * 90.00264 * 19 17 15 21 21 H 1.48504 * 109.47291 * 210.00433 * 19 17 15 22 22 H 1.48500 * 109.47202 * 330.00360 * 19 17 15 23 23 C 1.46505 * 119.99455 * 0.02562 * 8 6 5 24 24 C 1.52997 * 109.47212 * 90.00023 * 23 8 6 25 25 C 1.53000 * 117.50165 * 243.62151 * 24 23 8 26 26 C 1.52994 * 59.99907 * 252.50793 * 25 24 23 27 27 H 1.09003 * 109.47288 * 300.00241 * 1 2 3 28 28 H 1.09002 * 109.47030 * 59.99747 * 1 2 3 29 29 H 1.08995 * 109.47618 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47102 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47435 * 300.00004 * 3 2 1 32 32 H 1.09000 * 109.47763 * 59.99969 * 3 2 1 33 33 H 1.08997 * 109.47536 * 299.99647 * 4 2 1 34 34 H 1.08998 * 109.47737 * 60.00253 * 4 2 1 35 35 H 1.09004 * 109.47022 * 180.02562 * 4 2 1 36 36 H 1.09006 * 109.46911 * 30.00087 * 9 8 6 37 37 H 1.08996 * 109.47170 * 149.99599 * 9 8 6 38 38 H 0.97007 * 119.99577 * 359.97438 * 12 10 9 39 39 H 1.08996 * 109.47076 * 299.99915 * 13 12 10 40 40 H 1.09008 * 109.47146 * 60.00159 * 13 12 10 41 41 H 1.08996 * 109.47342 * 300.00045 * 14 13 12 42 42 H 1.09006 * 109.47211 * 60.00505 * 14 13 12 43 43 H 0.97003 * 119.99739 * 179.97438 * 18 17 15 44 44 H 1.09002 * 109.47068 * 210.00083 * 23 8 6 45 45 H 1.09001 * 109.47372 * 330.00170 * 23 8 6 46 46 H 1.09003 * 115.54795 * 29.32516 * 24 23 8 47 47 H 1.09001 * 117.49810 * 359.97438 * 25 24 23 48 48 H 1.08995 * 117.50134 * 145.01745 * 25 24 23 49 49 H 1.09004 * 117.49933 * 252.50827 * 26 25 24 50 50 H 1.09002 * 117.49788 * 107.49222 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3384 7 8 0.9515 -2.5096 0.5036 8 7 2.0680 -2.6657 2.4167 9 6 1.6739 -4.0667 2.5833 10 6 0.3793 -4.1365 3.3515 11 8 -0.1608 -3.1163 3.7237 12 7 -0.1785 -5.3326 3.6250 13 6 -1.4367 -5.4004 4.3723 14 6 -1.8489 -6.8637 4.5451 15 6 -3.1430 -6.9335 5.3144 16 1 -3.6235 -6.0250 5.6464 17 6 -3.7140 -8.1570 5.5933 18 7 -3.1291 -9.2633 5.1885 19 14 -5.3183 -8.2436 6.5462 20 1 -6.4601 -8.2060 5.5976 21 1 -5.3636 -9.5069 7.3256 22 1 -5.4065 -7.0868 7.4731 23 6 2.9132 -2.0179 3.4229 24 6 2.0297 -1.3765 4.4947 25 6 2.0856 0.1458 4.6383 26 6 2.7277 -0.7471 5.7019 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6767 -1.7489 -1.2492 34 1 1.6767 -0.2075 -2.1392 35 1 3.1300 -0.7217 -1.2490 36 1 1.5401 -4.5255 1.6036 37 1 2.4507 -4.6000 3.1312 38 1 0.2533 -6.1486 3.3270 39 1 -1.3024 -4.9423 5.3522 40 1 -2.2136 -4.8666 3.8249 41 1 -1.9833 -7.3214 3.5651 42 1 -1.0722 -7.3979 5.0923 43 1 -3.5306 -10.1242 5.3851 44 1 3.5629 -2.7613 3.8847 45 1 3.5217 -1.2495 2.9460 46 1 1.0696 -1.8635 4.6658 47 1 2.7522 0.6902 3.9695 48 1 1.1623 0.6605 4.9039 49 1 2.2268 -0.8198 6.6673 50 1 3.8164 -0.7900 5.7326 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495263428.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:25 Heat of formation + Delta-G solvation = -119.929065 kcal Electronic energy + Delta-G solvation = -29034.559264 eV Core-core repulsion = 25061.934109 eV Total energy + Delta-G solvation = -3972.625154 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.99961 -40.65159 -38.83738 -37.97842 -36.59769 -35.98134 -34.84410 -34.80056 -31.89235 -29.67504 -28.36278 -28.26984 -27.78001 -26.50241 -23.54295 -23.17841 -22.70661 -21.81472 -21.52084 -20.28381 -19.07808 -18.67684 -18.23265 -17.82688 -16.99896 -16.96908 -16.54368 -16.46111 -16.16010 -15.87910 -15.45774 -15.24155 -15.08292 -14.84258 -14.50761 -14.36738 -14.30465 -13.65880 -13.37167 -13.23543 -13.22058 -13.06577 -12.93123 -12.84362 -12.82154 -12.67847 -12.55059 -12.41200 -12.34701 -12.27338 -12.21384 -11.68837 -11.48471 -11.36481 -11.28389 -11.10961 -10.99211 -10.74461 -10.61571 -9.98427 -9.83957 -8.25678 -6.36057 1.02647 1.39907 1.40374 1.51746 1.64268 1.76193 2.30095 2.46267 2.74946 3.06143 3.08910 3.76776 3.79819 3.81189 3.88051 3.96595 4.02934 4.08117 4.20614 4.35110 4.38145 4.47325 4.50254 4.54706 4.59486 4.61936 4.72632 4.76983 4.80016 4.82162 4.83941 4.85877 4.89883 5.04815 5.11652 5.25598 5.26163 5.29207 5.31516 5.38542 5.43548 5.48606 5.57748 5.60500 5.78490 6.15272 6.25094 6.63729 6.76992 7.25627 7.33027 7.33178 8.86068 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.015716 B = 0.002634 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.217481 B =10627.265233 C =11352.795081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.125 3.875 3 C -0.132 4.132 4 C -0.177 4.177 5 O -0.356 6.356 6 C 0.654 3.346 7 O -0.594 6.594 8 N -0.575 5.575 9 C 0.116 3.884 10 C 0.485 3.515 11 O -0.574 6.574 12 N -0.715 5.715 13 C 0.146 3.854 14 C 0.024 3.976 15 C -0.548 4.548 16 H 0.055 0.945 17 C 0.008 3.992 18 N -0.925 5.925 19 Si 0.963 3.037 20 H -0.273 1.273 21 H -0.277 1.277 22 H -0.267 1.267 23 C 0.149 3.851 24 C -0.199 4.199 25 C -0.175 4.175 26 C -0.162 4.162 27 H 0.050 0.950 28 H 0.091 0.909 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.122 0.878 37 H 0.161 0.839 38 H 0.412 0.588 39 H 0.046 0.954 40 H 0.035 0.965 41 H 0.007 0.993 42 H 0.013 0.987 43 H 0.266 0.734 44 H 0.114 0.886 45 H 0.099 0.901 46 H 0.096 0.904 47 H 0.107 0.893 48 H 0.073 0.927 49 H 0.085 0.915 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.379 19.192 -8.821 28.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.089 3.911 3 C -0.189 4.189 4 C -0.234 4.234 5 O -0.271 6.271 6 C 0.409 3.591 7 O -0.486 6.486 8 N -0.312 5.312 9 C -0.009 4.009 10 C 0.271 3.729 11 O -0.454 6.454 12 N -0.367 5.367 13 C 0.021 3.979 14 C -0.013 4.013 15 C -0.587 4.587 16 H 0.074 0.926 17 C -0.191 4.191 18 N -0.565 5.565 19 Si 0.788 3.212 20 H -0.199 1.199 21 H -0.202 1.202 22 H -0.192 1.192 23 C 0.027 3.973 24 C -0.218 4.218 25 C -0.212 4.212 26 C -0.199 4.199 27 H 0.069 0.931 28 H 0.110 0.890 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.119 0.881 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.107 0.893 35 H 0.088 0.912 36 H 0.140 0.860 37 H 0.178 0.822 38 H 0.249 0.751 39 H 0.064 0.936 40 H 0.053 0.947 41 H 0.025 0.975 42 H 0.031 0.969 43 H 0.075 0.925 44 H 0.132 0.868 45 H 0.117 0.883 46 H 0.114 0.886 47 H 0.126 0.874 48 H 0.092 0.908 49 H 0.104 0.896 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 18.781 19.647 -8.870 28.590 hybrid contribution -1.456 -0.840 0.461 1.743 sum 17.325 18.807 -8.409 26.918 Atomic orbital electron populations 1.22458 0.95234 1.03053 1.02993 1.22383 0.93693 0.93116 0.81923 1.21854 1.02708 0.90300 1.04068 1.22450 1.01920 1.02029 0.96994 1.86308 1.71188 1.22482 1.47085 1.18160 0.77815 0.81053 0.82027 1.90894 1.41727 1.71027 1.44906 1.46399 1.52411 1.11173 1.21266 1.21527 0.94476 0.81798 1.03110 1.21872 0.88114 0.83099 0.79824 1.90597 1.64899 1.35389 1.54483 1.46080 1.25002 1.08898 1.56739 1.21127 0.84145 0.98488 0.94095 1.19121 0.95798 0.90245 0.96176 1.21463 1.08233 0.92857 1.36115 0.92649 1.25848 1.01212 0.95253 0.96748 1.70054 1.40995 0.98136 1.47271 0.85473 0.79206 0.77847 0.78701 1.19903 1.20246 1.19152 1.21411 0.90525 0.98263 0.87052 1.23113 1.02398 0.96575 0.99754 1.22941 1.02432 0.92664 1.03148 1.22971 1.00841 1.03092 0.93006 0.93089 0.89016 0.92883 0.90432 0.88110 0.91683 0.92217 0.89277 0.91169 0.85972 0.82197 0.75144 0.93588 0.94650 0.97491 0.96852 0.92482 0.86825 0.88327 0.88630 0.87427 0.90827 0.89644 0.86323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.27 8.37 71.98 0.60 -3.67 16 2 C 0.13 2.55 1.13 -10.80 -0.01 2.53 16 3 C -0.13 -1.70 8.85 71.98 0.64 -1.06 16 4 C -0.18 -3.29 8.37 71.98 0.60 -2.69 16 5 O -0.36 -8.76 8.71 -55.48 -0.48 -9.24 16 6 C 0.65 18.77 7.70 129.79 1.00 19.77 16 7 O -0.59 -20.29 11.46 19.78 0.23 -20.06 16 8 N -0.58 -13.89 2.03 -956.55 -1.94 -15.83 16 9 C 0.12 2.62 5.93 85.63 0.51 3.13 16 10 C 0.48 15.98 7.90 87.66 0.69 16.67 16 11 O -0.57 -23.70 13.50 -3.05 -0.04 -23.74 16 12 N -0.72 -24.44 5.56 -463.07 -2.57 -27.01 16 13 C 0.15 6.38 5.61 86.38 0.48 6.86 16 14 C 0.02 1.22 5.09 29.85 0.15 1.38 16 15 C -0.55 -31.10 9.11 25.60 0.23 -30.86 16 16 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 17 C 0.01 0.47 5.46 84.65 0.46 0.93 16 18 N -0.93 -54.47 13.29 21.45 0.28 -54.19 16 19 Si 0.96 44.12 29.54 68.60 2.03 46.14 16 20 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 21 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 23 C 0.15 2.75 5.74 86.38 0.50 3.25 16 24 C -0.20 -4.71 5.92 -10.80 -0.06 -4.78 16 25 C -0.17 -3.65 10.18 30.59 0.31 -3.33 16 26 C -0.16 -2.96 10.25 30.59 0.31 -2.64 16 27 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.05 1.66 5.88 -2.39 -0.01 1.65 16 30 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.06 1.49 5.88 -2.39 -0.01 1.48 16 34 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 36 H 0.12 2.67 7.42 -2.38 -0.02 2.66 16 37 H 0.16 2.06 7.89 -2.39 -0.02 2.04 16 38 H 0.41 11.62 8.47 -92.70 -0.79 10.84 16 39 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 41 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 42 H 0.01 0.69 8.14 -2.38 -0.02 0.67 16 43 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 44 H 0.11 1.39 7.89 -2.39 -0.02 1.37 16 45 H 0.10 1.57 7.11 -2.39 -0.02 1.55 16 46 H 0.10 3.19 5.08 -2.39 -0.01 3.18 16 47 H 0.11 1.87 8.03 -2.39 -0.02 1.85 16 48 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 49 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 50 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -75.78 404.70 4.06 -71.72 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: 0.14 Total: 26.73 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: 6.42 Total: 5.48 kcal Atomic # 7 Polarization: -92.80 SS G_CDS: -4.23 Total: -97.03 kcal Atomic # 8 Polarization: -52.75 SS G_CDS: -0.30 Total: -53.04 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Total: -75.78 4.06 -71.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495263428.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.207 kcal (2) G-P(sol) polarization free energy of solvation -75.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds