Wall clock time and date at job start Tue Mar 31 2020 14:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 119.99943 * 2 1 4 4 C 1.52998 * 109.47160 * 90.00270 * 3 2 1 5 5 H 1.09000 * 109.49311 * 305.05955 * 4 3 2 6 6 C 1.53042 * 109.49616 * 185.00143 * 4 3 2 7 7 C 1.53041 * 109.53546 * 178.68058 * 6 4 3 8 8 C 1.53199 * 109.31434 * 61.36172 * 7 6 4 9 9 N 1.46926 * 108.77455 * 305.36323 * 8 7 6 10 10 C 1.34773 * 120.63151 * 233.63115 * 9 8 7 11 11 O 1.21689 * 119.99989 * 174.83537 * 10 9 8 12 12 C 1.46370 * 119.99980 * 354.82461 * 10 9 8 13 13 H 1.08001 * 120.00063 * 342.42487 * 12 10 9 14 14 C 1.40054 * 120.00044 * 162.41689 * 12 10 9 15 15 N 1.30673 * 120.00027 * 170.18402 * 14 12 10 16 16 Si 1.86794 * 119.99998 * 350.19145 * 14 12 10 17 17 H 1.48506 * 109.47426 * 84.75960 * 16 14 12 18 18 H 1.48499 * 109.47167 * 204.75900 * 16 14 12 19 19 H 1.48501 * 109.47280 * 324.76093 * 16 14 12 20 20 C 1.46924 * 118.73786 * 53.61041 * 9 8 7 21 21 C 1.34774 * 119.99978 * 179.97438 * 2 1 3 22 22 O 1.21511 * 120.00231 * 179.97438 * 21 2 1 23 23 O 1.34638 * 120.00229 * 0.02562 * 21 2 1 24 24 C 1.45199 * 117.00412 * 180.02562 * 23 21 2 25 25 C 1.52993 * 109.47321 * 59.99523 * 24 23 21 26 26 C 1.53002 * 109.47290 * 179.97438 * 24 23 21 27 27 C 1.52999 * 109.46917 * 299.99531 * 24 23 21 28 28 H 1.09003 * 109.46611 * 90.00123 * 1 2 3 29 29 H 1.09002 * 109.47010 * 209.99738 * 1 2 3 30 30 H 1.08998 * 109.47114 * 330.00273 * 1 2 3 31 31 H 1.09000 * 109.47039 * 329.99501 * 3 2 1 32 32 H 1.09005 * 109.46727 * 209.99920 * 3 2 1 33 33 H 1.08993 * 109.46221 * 58.66167 * 6 4 3 34 34 H 1.09003 * 109.44688 * 298.68853 * 6 4 3 35 35 H 1.09002 * 109.49645 * 301.41104 * 7 6 4 36 36 H 1.08997 * 109.52724 * 181.32963 * 7 6 4 37 37 H 1.08996 * 109.58521 * 65.15436 * 8 7 6 38 38 H 1.08997 * 109.58592 * 185.57443 * 8 7 6 39 39 H 0.96998 * 120.00062 * 179.97438 * 15 14 12 40 40 H 1.08999 * 109.58807 * 186.60017 * 20 9 8 41 41 H 1.09001 * 109.70979 * 66.24251 * 20 9 8 42 42 H 1.09000 * 109.47471 * 59.99970 * 25 24 23 43 43 H 1.09002 * 109.47628 * 180.02562 * 25 24 23 44 44 H 1.09000 * 109.47478 * 300.00504 * 25 24 23 45 45 H 1.09000 * 109.47538 * 59.99616 * 26 24 23 46 46 H 1.09002 * 109.47094 * 180.02562 * 26 24 23 47 47 H 1.09002 * 109.47039 * 299.99602 * 26 24 23 48 48 H 1.09002 * 109.47147 * 60.00143 * 27 24 23 49 49 H 1.09004 * 109.47303 * 179.97438 * 27 24 23 50 50 H 1.09000 * 109.46989 * 299.99819 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4425 5 1 1.5065 1.7540 1.9822 6 6 3.1062 3.0942 1.4450 7 6 3.3317 3.5510 2.8881 8 6 4.2759 2.5689 3.5888 9 7 3.7247 1.2126 3.4644 10 6 3.5325 0.4467 4.5565 11 8 2.9890 -0.6370 4.4517 12 6 3.9776 0.9182 5.8687 13 1 4.6966 1.7211 5.9387 14 6 3.4711 0.3284 7.0337 15 7 4.0031 0.6106 8.1934 16 14 2.0353 -0.8619 6.9296 17 1 2.5425 -2.2240 6.6249 18 1 1.3134 -0.8813 8.2271 19 1 1.1085 -0.4267 5.8539 20 6 3.3867 0.7074 2.1268 21 6 2.1389 -1.1672 0.0005 22 8 3.3540 -1.1672 0.0001 23 8 1.4657 -2.3332 0.0005 24 6 2.2565 -3.5510 0.0017 25 6 3.1382 -3.5853 1.2515 26 6 1.3245 -4.7643 0.0021 27 6 3.1400 -3.5865 -1.2469 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6084 2.0283 -0.5139 32 1 3.1499 1.1383 -0.5139 33 1 2.4543 3.8047 0.9369 34 1 4.0635 3.0442 0.9261 35 1 2.3777 3.5771 3.4147 36 1 3.7756 4.5465 2.8899 37 1 5.2586 2.6085 3.1190 38 1 4.3616 2.8333 4.6428 39 1 3.6521 0.2024 9.0002 40 1 2.8856 -0.2565 2.2161 41 1 4.2958 0.5933 1.5364 42 1 2.5089 -3.5600 2.1411 43 1 3.7322 -4.4993 1.2522 44 1 3.8022 -2.7209 1.2516 45 1 0.6959 -4.7401 -0.8880 46 1 1.9181 -5.6785 0.0035 47 1 0.6953 -4.7389 0.8919 48 1 3.8040 -2.7221 -1.2469 49 1 3.7340 -4.5004 -1.2459 50 1 2.5118 -3.5620 -2.1373 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495362973.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:31 Heat of formation + Delta-G solvation = -130.617110 kcal Electronic energy + Delta-G solvation = -30638.658463 eV Core-core repulsion = 26665.569840 eV Total energy + Delta-G solvation = -3973.088623 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.77791 -39.02161 -37.62019 -36.23855 -35.31734 -33.88334 -32.78798 -32.21885 -30.88427 -27.55296 -27.40196 -27.20799 -26.74457 -25.68284 -24.21887 -22.46923 -21.11763 -20.23880 -19.23956 -18.89741 -17.67655 -16.70192 -16.63410 -16.21705 -15.81750 -15.28010 -14.88509 -14.64691 -14.46176 -14.14528 -13.94978 -13.85046 -13.41853 -13.38534 -13.02398 -12.80756 -12.54281 -12.50131 -12.28405 -12.23599 -12.05328 -11.96897 -11.93379 -11.80807 -11.69111 -11.42891 -11.26942 -11.18398 -10.85387 -10.71588 -10.62476 -10.44370 -10.24409 -10.22388 -10.00678 -9.81234 -9.42276 -8.97062 -8.67790 -7.84359 -7.41644 -6.57801 -4.76607 2.23559 3.00734 3.46872 3.50107 3.72272 3.89166 4.23125 4.32146 4.58369 4.76767 4.80836 4.92237 4.97143 4.98103 5.10085 5.19133 5.28619 5.38297 5.45123 5.52632 5.53314 5.59882 5.63373 5.66686 5.68564 5.73585 5.80047 5.84992 5.94301 5.95722 5.98096 6.06259 6.09162 6.18272 6.29385 6.35799 6.42002 6.51074 6.54250 6.58766 6.64546 6.67245 6.82149 7.18523 7.42236 7.74512 7.95859 8.38793 8.48512 8.79071 9.22955 10.12941 10.43941 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.011127 B = 0.005057 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.787993 B = 5535.640288 C = 7124.338241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.600 5.600 3 C 0.140 3.860 4 C -0.123 4.123 5 H 0.073 0.927 6 C -0.106 4.106 7 C -0.133 4.133 8 C 0.119 3.881 9 N -0.632 5.632 10 C 0.557 3.443 11 O -0.616 6.616 12 C -0.534 4.534 13 H 0.090 0.910 14 C 0.104 3.896 15 N -0.831 5.831 16 Si 0.962 3.038 17 H -0.277 1.277 18 H -0.321 1.321 19 H -0.269 1.269 20 C 0.135 3.865 21 C 0.653 3.347 22 O -0.559 6.559 23 O -0.364 6.364 24 C 0.137 3.863 25 C -0.183 4.183 26 C -0.139 4.139 27 C -0.180 4.180 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.045 0.955 38 H 0.097 0.903 39 H 0.281 0.719 40 H 0.081 0.919 41 H 0.052 0.948 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.090 0.910 45 H 0.063 0.937 46 H 0.078 0.922 47 H 0.067 0.933 48 H 0.088 0.912 49 H 0.068 0.932 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.114 -0.307 -18.791 19.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.340 5.340 3 C 0.018 3.982 4 C -0.143 4.143 5 H 0.091 0.909 6 C -0.145 4.145 7 C -0.171 4.171 8 C -0.005 4.005 9 N -0.366 5.366 10 C 0.365 3.635 11 O -0.508 6.508 12 C -0.570 4.570 13 H 0.108 0.892 14 C -0.113 4.113 15 N -0.461 5.461 16 Si 0.795 3.205 17 H -0.203 1.203 18 H -0.252 1.252 19 H -0.195 1.195 20 C 0.011 3.989 21 C 0.409 3.591 22 O -0.447 6.447 23 O -0.279 6.279 24 C 0.100 3.900 25 C -0.241 4.241 26 C -0.197 4.197 27 C -0.238 4.238 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.106 0.894 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.063 0.937 38 H 0.115 0.885 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.109 0.891 45 H 0.082 0.918 46 H 0.097 0.903 47 H 0.086 0.914 48 H 0.107 0.893 49 H 0.087 0.913 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.939 -0.939 -18.659 19.604 hybrid contribution -0.548 -0.367 0.106 0.668 sum -6.488 -1.306 -18.553 19.698 Atomic orbital electron populations 1.21726 0.78849 1.03690 1.01490 1.46629 1.07122 1.03584 1.76704 1.21544 0.97367 0.82255 0.97036 1.22034 1.00459 0.96366 0.95485 0.90880 1.21451 1.00373 0.95203 0.97439 1.21916 1.01042 0.98634 0.95528 1.21480 0.94473 0.82306 1.02254 1.47738 1.67910 1.15131 1.05795 1.18339 0.77590 0.83202 0.84336 1.90209 1.51437 1.24281 1.84850 1.20760 1.27179 1.21254 0.87826 0.89237 1.25702 0.97008 0.94509 0.94131 1.69568 1.38195 1.39085 0.99284 0.85314 0.80520 0.80977 0.73695 1.20307 1.25191 1.19453 1.21225 0.97034 0.96905 0.83746 1.17941 0.84059 0.81138 0.76011 1.90905 1.12084 1.86659 1.55081 1.86266 1.41085 1.13859 1.86641 1.22051 0.90812 0.80521 0.96614 1.22501 1.00829 1.04363 0.96367 1.21846 0.99579 0.95107 1.03124 1.22498 1.00558 1.04473 0.96238 0.92791 0.90535 0.90953 0.90035 0.89433 0.92389 0.91926 0.91721 0.91558 0.93704 0.88485 0.90936 0.90104 0.92942 0.91665 0.91521 0.89096 0.91809 0.90283 0.91411 0.89336 0.91330 0.92583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.92 10.44 59.85 0.63 1.54 16 2 N -0.60 -8.27 2.78 -187.41 -0.52 -8.79 16 3 C 0.14 1.75 5.00 -4.04 -0.02 1.73 16 4 C -0.12 -1.87 2.54 -90.50 -0.23 -2.10 16 5 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 6 C -0.11 -1.37 5.17 -26.69 -0.14 -1.51 16 7 C -0.13 -1.96 6.08 -26.61 -0.16 -2.12 16 8 C 0.12 2.23 6.28 -3.71 -0.02 2.20 16 9 N -0.63 -14.39 2.97 -174.43 -0.52 -14.91 16 10 C 0.56 15.45 7.21 -12.99 -0.09 15.35 16 11 O -0.62 -18.59 12.12 5.20 0.06 -18.53 16 12 C -0.53 -15.43 9.08 -35.63 -0.32 -15.75 16 13 H 0.09 2.56 6.42 -52.49 -0.34 2.23 16 14 C 0.10 3.03 5.52 -17.36 -0.10 2.93 16 15 N -0.83 -24.05 13.92 55.55 0.77 -23.28 16 16 Si 0.96 26.09 25.83 -169.99 -4.39 21.70 16 17 H -0.28 -7.77 7.11 56.52 0.40 -7.37 16 18 H -0.32 -8.17 7.11 56.52 0.40 -7.77 16 19 H -0.27 -7.61 6.82 56.52 0.39 -7.22 16 20 C 0.13 2.71 4.34 -3.71 -0.02 2.70 16 21 C 0.65 10.61 6.36 54.05 0.34 10.95 16 22 O -0.56 -10.09 9.58 -19.28 -0.18 -10.27 16 23 O -0.36 -5.56 8.71 -40.32 -0.35 -5.91 16 24 C 0.14 1.86 1.13 -90.62 -0.10 1.76 16 25 C -0.18 -2.91 8.37 37.15 0.31 -2.60 16 26 C -0.14 -1.46 8.85 37.16 0.33 -1.13 16 27 C -0.18 -2.19 8.37 37.16 0.31 -1.88 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.89 7.37 -51.93 -0.38 0.51 16 30 H 0.07 0.68 8.07 -51.93 -0.42 0.26 16 31 H 0.08 0.76 8.07 -51.93 -0.42 0.34 16 32 H 0.09 1.14 7.42 -51.93 -0.39 0.76 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.10 1.98 5.60 -51.93 -0.29 1.69 16 39 H 0.28 7.48 8.29 -40.82 -0.34 7.15 16 40 H 0.08 1.90 5.41 -51.93 -0.28 1.62 16 41 H 0.05 1.06 7.73 -51.93 -0.40 0.66 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.09 1.72 5.88 -51.93 -0.31 1.41 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 47 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.09 1.27 5.88 -51.93 -0.31 0.97 16 49 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 381.84 15.07 5.75 5.75 Total: -1.00 -34.56 381.84 -7.26 -41.82 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -8.60 Total: 0.35 kcal Atomic # 6 Polarization: 11.35 SS G_CDS: 0.72 Total: 12.07 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: -0.27 Total: -46.98 kcal Atomic # 8 Polarization: -34.24 SS G_CDS: -0.47 Total: -34.72 kcal Atomic # 14 Polarization: 26.09 SS G_CDS: -4.39 Total: 21.70 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.56 -7.26 -41.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495362973.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.798 kcal (2) G-P(sol) polarization free energy of solvation -34.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds