Wall clock time and date at job start Tue Mar 31 2020 14:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 119.99943 * 2 1 4 4 C 1.52998 * 109.47160 * 90.00270 * 3 2 1 5 5 H 1.09000 * 109.49311 * 305.05955 * 4 3 2 6 6 C 1.53042 * 109.49616 * 185.00143 * 4 3 2 7 7 C 1.53041 * 109.53546 * 178.68058 * 6 4 3 8 8 C 1.53199 * 109.31434 * 61.36172 * 7 6 4 9 9 N 1.46926 * 108.77455 * 305.36323 * 8 7 6 10 10 C 1.34773 * 120.63151 * 233.63115 * 9 8 7 11 11 O 1.21689 * 119.99989 * 174.83537 * 10 9 8 12 12 C 1.46370 * 119.99980 * 354.82461 * 10 9 8 13 13 H 1.08001 * 120.00063 * 342.42487 * 12 10 9 14 14 C 1.40054 * 120.00044 * 162.41689 * 12 10 9 15 15 N 1.30673 * 120.00027 * 170.18402 * 14 12 10 16 16 Si 1.86794 * 119.99998 * 350.19145 * 14 12 10 17 17 H 1.48506 * 109.47426 * 84.75960 * 16 14 12 18 18 H 1.48499 * 109.47167 * 204.75900 * 16 14 12 19 19 H 1.48501 * 109.47280 * 324.76093 * 16 14 12 20 20 C 1.46924 * 118.73786 * 53.61041 * 9 8 7 21 21 C 1.34774 * 119.99978 * 179.97438 * 2 1 3 22 22 O 1.21511 * 120.00231 * 179.97438 * 21 2 1 23 23 O 1.34638 * 120.00229 * 0.02562 * 21 2 1 24 24 C 1.45199 * 117.00412 * 180.02562 * 23 21 2 25 25 C 1.52993 * 109.47321 * 59.99523 * 24 23 21 26 26 C 1.53002 * 109.47290 * 179.97438 * 24 23 21 27 27 C 1.52999 * 109.46917 * 299.99531 * 24 23 21 28 28 H 1.09003 * 109.46611 * 90.00123 * 1 2 3 29 29 H 1.09002 * 109.47010 * 209.99738 * 1 2 3 30 30 H 1.08998 * 109.47114 * 330.00273 * 1 2 3 31 31 H 1.09000 * 109.47039 * 329.99501 * 3 2 1 32 32 H 1.09005 * 109.46727 * 209.99920 * 3 2 1 33 33 H 1.08993 * 109.46221 * 58.66167 * 6 4 3 34 34 H 1.09003 * 109.44688 * 298.68853 * 6 4 3 35 35 H 1.09002 * 109.49645 * 301.41104 * 7 6 4 36 36 H 1.08997 * 109.52724 * 181.32963 * 7 6 4 37 37 H 1.08996 * 109.58521 * 65.15436 * 8 7 6 38 38 H 1.08997 * 109.58592 * 185.57443 * 8 7 6 39 39 H 0.96998 * 120.00062 * 179.97438 * 15 14 12 40 40 H 1.08999 * 109.58807 * 186.60017 * 20 9 8 41 41 H 1.09001 * 109.70979 * 66.24251 * 20 9 8 42 42 H 1.09000 * 109.47471 * 59.99970 * 25 24 23 43 43 H 1.09002 * 109.47628 * 180.02562 * 25 24 23 44 44 H 1.09000 * 109.47478 * 300.00504 * 25 24 23 45 45 H 1.09000 * 109.47538 * 59.99616 * 26 24 23 46 46 H 1.09002 * 109.47094 * 180.02562 * 26 24 23 47 47 H 1.09002 * 109.47039 * 299.99602 * 26 24 23 48 48 H 1.09002 * 109.47147 * 60.00143 * 27 24 23 49 49 H 1.09004 * 109.47303 * 179.97438 * 27 24 23 50 50 H 1.09000 * 109.46989 * 299.99819 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4425 5 1 1.5065 1.7540 1.9822 6 6 3.1062 3.0942 1.4450 7 6 3.3317 3.5510 2.8881 8 6 4.2759 2.5689 3.5888 9 7 3.7247 1.2126 3.4644 10 6 3.5325 0.4467 4.5565 11 8 2.9890 -0.6370 4.4517 12 6 3.9776 0.9182 5.8687 13 1 4.6966 1.7211 5.9387 14 6 3.4711 0.3284 7.0337 15 7 4.0031 0.6106 8.1934 16 14 2.0353 -0.8619 6.9296 17 1 2.5425 -2.2240 6.6249 18 1 1.3134 -0.8813 8.2271 19 1 1.1085 -0.4267 5.8539 20 6 3.3867 0.7074 2.1268 21 6 2.1389 -1.1672 0.0005 22 8 3.3540 -1.1672 0.0001 23 8 1.4657 -2.3332 0.0005 24 6 2.2565 -3.5510 0.0017 25 6 3.1382 -3.5853 1.2515 26 6 1.3245 -4.7643 0.0021 27 6 3.1400 -3.5865 -1.2469 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6084 2.0283 -0.5139 32 1 3.1499 1.1383 -0.5139 33 1 2.4543 3.8047 0.9369 34 1 4.0635 3.0442 0.9261 35 1 2.3777 3.5771 3.4147 36 1 3.7756 4.5465 2.8899 37 1 5.2586 2.6085 3.1190 38 1 4.3616 2.8333 4.6428 39 1 3.6521 0.2024 9.0002 40 1 2.8856 -0.2565 2.2161 41 1 4.2958 0.5933 1.5364 42 1 2.5089 -3.5600 2.1411 43 1 3.7322 -4.4993 1.2522 44 1 3.8022 -2.7209 1.2516 45 1 0.6959 -4.7401 -0.8880 46 1 1.9181 -5.6785 0.0035 47 1 0.6953 -4.7389 0.8919 48 1 3.8040 -2.7221 -1.2469 49 1 3.7340 -4.5004 -1.2459 50 1 2.5118 -3.5620 -2.1373 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495362973.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:30 Heat of formation + Delta-G solvation = -153.646506 kcal Electronic energy + Delta-G solvation = -30639.657092 eV Core-core repulsion = 26665.569840 eV Total energy + Delta-G solvation = -3974.087252 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.94724 -40.63868 -39.02380 -37.83871 -36.56488 -35.06636 -35.00728 -33.72618 -32.28070 -29.28570 -28.41409 -28.33869 -27.97616 -26.97952 -25.88710 -23.75879 -22.37179 -21.79734 -20.55368 -20.36907 -18.90027 -18.58229 -18.06600 -17.76178 -17.34590 -16.76234 -16.36348 -16.10110 -15.79284 -15.49031 -15.36388 -15.22668 -14.85766 -14.53740 -14.50871 -14.29849 -14.00612 -13.86632 -13.76498 -13.49409 -13.40361 -13.26599 -13.13088 -13.12901 -12.87042 -12.85773 -12.66686 -12.56667 -12.41503 -12.28272 -12.02808 -11.94379 -11.70375 -11.43478 -11.39547 -11.34263 -11.24281 -11.02574 -10.07506 -9.71970 -9.27319 -8.83862 -7.03076 1.18095 1.24640 1.27552 1.50071 1.80935 2.04058 2.28156 2.67411 2.89238 3.25407 3.72485 3.76387 3.80592 3.82742 3.91697 3.95857 4.19476 4.24470 4.36146 4.40955 4.44501 4.54020 4.58229 4.59664 4.66056 4.71964 4.73082 4.75973 4.80122 4.81758 4.84917 4.89932 4.91328 5.01661 5.05723 5.07962 5.17840 5.23565 5.25319 5.27324 5.30925 5.46013 5.52231 5.56184 5.66732 5.98952 6.21545 6.30236 6.59642 7.14017 7.31139 7.96426 8.22585 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.011127 B = 0.005057 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.787993 B = 5535.640288 C = 7124.338241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.602 5.602 3 C 0.143 3.857 4 C -0.114 4.114 5 H 0.059 0.941 6 C -0.099 4.099 7 C -0.125 4.125 8 C 0.110 3.890 9 N -0.633 5.633 10 C 0.548 3.452 11 O -0.650 6.650 12 C -0.551 4.551 13 H 0.084 0.916 14 C 0.075 3.925 15 N -0.848 5.848 16 Si 1.006 2.994 17 H -0.297 1.297 18 H -0.290 1.290 19 H -0.292 1.292 20 C 0.140 3.860 21 C 0.641 3.359 22 O -0.586 6.586 23 O -0.370 6.370 24 C 0.128 3.872 25 C -0.178 4.178 26 C -0.133 4.133 27 C -0.172 4.172 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.088 0.912 31 H 0.130 0.870 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.074 0.926 35 H 0.051 0.949 36 H 0.102 0.898 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.292 0.708 40 H 0.040 0.960 41 H 0.047 0.953 42 H 0.035 0.965 43 H 0.089 0.911 44 H 0.054 0.946 45 H 0.081 0.919 46 H 0.101 0.899 47 H 0.057 0.943 48 H 0.062 0.938 49 H 0.088 0.912 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.369 0.996 -21.221 22.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.342 5.342 3 C 0.022 3.978 4 C -0.135 4.135 5 H 0.078 0.922 6 C -0.137 4.137 7 C -0.163 4.163 8 C -0.013 4.013 9 N -0.365 5.365 10 C 0.355 3.645 11 O -0.544 6.544 12 C -0.587 4.587 13 H 0.102 0.898 14 C -0.141 4.141 15 N -0.479 5.479 16 Si 0.838 3.162 17 H -0.224 1.224 18 H -0.219 1.219 19 H -0.219 1.219 20 C 0.017 3.983 21 C 0.396 3.604 22 O -0.477 6.477 23 O -0.284 6.284 24 C 0.092 3.908 25 C -0.235 4.235 26 C -0.190 4.190 27 C -0.229 4.229 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.148 0.852 32 H 0.101 0.899 33 H 0.119 0.881 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.120 0.880 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.108 0.892 44 H 0.073 0.927 45 H 0.100 0.900 46 H 0.120 0.880 47 H 0.076 0.924 48 H 0.081 0.919 49 H 0.107 0.893 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.206 0.417 -21.088 22.289 hybrid contribution -0.071 -0.772 0.857 1.156 sum -7.276 -0.355 -20.231 21.503 Atomic orbital electron populations 1.21916 0.76998 1.03749 1.03342 1.46892 1.08444 1.03192 1.75691 1.21676 0.98246 0.82736 0.95173 1.21977 0.98432 0.96534 0.96522 0.92248 1.21465 1.01723 0.94068 0.96437 1.21878 0.99347 0.98976 0.96121 1.21738 0.96488 0.81142 1.01922 1.47782 1.66893 1.16178 1.05670 1.18368 0.77476 0.83128 0.85527 1.90184 1.52737 1.25758 1.85739 1.20942 1.27545 1.21461 0.88763 0.89788 1.26136 0.98252 0.95444 0.94282 1.69554 1.38855 1.39759 0.99713 0.84733 0.78776 0.78619 0.74068 1.22418 1.21873 1.21886 1.21249 0.97603 0.96862 0.82578 1.18317 0.84072 0.81967 0.76075 1.90884 1.13303 1.87126 1.56337 1.86271 1.41434 1.14200 1.86534 1.22332 0.91510 0.81119 0.95856 1.22435 1.00472 1.03839 0.96798 1.21865 0.99366 0.94261 1.03538 1.22406 1.00232 1.04286 0.95944 0.89927 0.92149 0.89301 0.85199 0.89929 0.88054 0.90750 0.93036 0.87972 0.92104 0.90748 0.89758 0.94127 0.93487 0.94539 0.89221 0.92696 0.89981 0.88015 0.92374 0.91948 0.89299 0.90937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.60 10.44 127.77 1.33 2.94 16 2 N -0.60 -15.98 2.78 -977.26 -2.71 -18.69 16 3 C 0.14 3.20 5.00 86.38 0.43 3.64 16 4 C -0.11 -3.28 2.54 -10.72 -0.03 -3.31 16 5 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 6 C -0.10 -2.17 5.17 30.62 0.16 -2.01 16 7 C -0.12 -3.35 6.08 30.67 0.19 -3.16 16 8 C 0.11 4.07 6.28 86.36 0.54 4.62 16 9 N -0.63 -29.56 2.97 -824.00 -2.45 -32.01 16 10 C 0.55 31.65 7.21 86.36 0.62 32.28 16 11 O -0.65 -41.19 12.12 -4.31 -0.05 -41.24 16 12 C -0.55 -32.86 9.08 24.83 0.23 -32.63 16 13 H 0.08 4.98 6.42 -2.91 -0.02 4.97 16 14 C 0.07 4.43 5.52 85.31 0.47 4.90 16 15 N -0.85 -49.43 13.92 21.84 0.30 -49.13 16 16 Si 1.01 55.04 25.83 68.60 1.77 56.82 16 17 H -0.30 -17.06 7.11 99.48 0.71 -16.35 16 18 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 19 H -0.29 -16.94 6.82 99.48 0.68 -16.27 16 20 C 0.14 5.78 4.34 86.36 0.37 6.15 16 21 C 0.64 21.21 6.36 129.79 0.83 22.03 16 22 O -0.59 -22.09 9.58 19.81 0.19 -21.90 16 23 O -0.37 -11.51 8.71 -55.47 -0.48 -11.99 16 24 C 0.13 3.50 1.13 -10.80 -0.01 3.49 16 25 C -0.18 -6.00 8.37 71.98 0.60 -5.40 16 26 C -0.13 -2.63 8.85 71.98 0.64 -1.99 16 27 C -0.17 -4.03 8.37 71.98 0.60 -3.43 16 28 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.06 1.38 7.37 -2.39 -0.02 1.36 16 30 H 0.09 1.44 8.07 -2.39 -0.02 1.42 16 31 H 0.13 1.73 8.07 -2.39 -0.02 1.71 16 32 H 0.08 1.99 7.42 -2.38 -0.02 1.97 16 33 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.07 3.09 5.60 -2.39 -0.01 3.08 16 39 H 0.29 15.51 8.29 -92.71 -0.77 14.74 16 40 H 0.04 2.01 5.41 -2.39 -0.01 1.99 16 41 H 0.05 1.97 7.73 -2.39 -0.02 1.95 16 42 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.09 2.47 8.14 -2.39 -0.02 2.46 16 44 H 0.05 2.25 5.88 -2.39 -0.01 2.23 16 45 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.06 1.83 5.88 -2.39 -0.01 1.81 16 49 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 50 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -80.77 381.84 4.43 -76.34 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: 0.89 Total: 13.69 kcal Atomic # 6 Polarization: 21.13 SS G_CDS: 6.98 Total: 28.11 kcal Atomic # 7 Polarization: -94.97 SS G_CDS: -4.86 Total: -99.83 kcal Atomic # 8 Polarization: -74.78 SS G_CDS: -0.35 Total: -75.13 kcal Atomic # 14 Polarization: 55.04 SS G_CDS: 1.77 Total: 56.82 kcal Total: -80.77 4.43 -76.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495362973.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.305 kcal (2) G-P(sol) polarization free energy of solvation -80.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds