Wall clock time and date at job start Tue Mar 31 2020 14:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.52997 * 109.47232 * 239.99603 * 2 1 3 5 5 O 1.45206 * 109.46989 * 119.99587 * 2 1 3 6 6 C 1.34639 * 116.99892 * 59.99951 * 5 2 1 7 7 O 1.21513 * 119.99857 * 359.97438 * 6 5 2 8 8 N 1.34773 * 119.99616 * 179.97438 * 6 5 2 9 9 C 1.46507 * 119.99575 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.47046 * 35.00111 * 9 8 6 11 11 C 1.53006 * 109.47117 * 274.99911 * 9 8 6 12 12 C 1.52993 * 109.47073 * 179.97438 * 11 9 8 13 13 C 1.53007 * 109.47137 * 60.00415 * 12 11 9 14 14 C 1.53009 * 109.46797 * 300.00125 * 13 12 11 15 15 C 1.52998 * 109.47348 * 59.99673 * 14 13 12 16 16 H 1.09000 * 109.46906 * 60.00115 * 15 14 13 17 17 C 1.52996 * 109.46994 * 179.97438 * 15 14 13 18 18 C 1.50703 * 109.47447 * 295.00116 * 17 15 14 19 19 O 1.21296 * 119.99471 * 359.97438 * 18 17 15 20 20 N 1.34769 * 119.99884 * 179.97438 * 18 17 15 21 21 C 1.37104 * 119.99561 * 180.02562 * 20 18 17 22 22 H 1.07997 * 120.00266 * 359.97438 * 21 20 18 23 23 C 1.38952 * 119.99922 * 180.02562 * 21 20 18 24 24 N 1.31416 * 120.00183 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00228 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.46950 * 359.97438 * 25 23 21 27 27 H 1.48493 * 109.47337 * 119.99731 * 25 23 21 28 28 H 1.48498 * 109.46971 * 240.00015 * 25 23 21 29 29 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 30 30 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 31 31 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 34 34 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 35 35 H 1.09001 * 109.46832 * 300.00199 * 4 2 1 36 36 H 1.09002 * 109.47153 * 60.00008 * 4 2 1 37 37 H 1.08996 * 109.46952 * 180.02562 * 4 2 1 38 38 H 0.96996 * 120.00663 * 0.02562 * 8 6 5 39 39 H 1.08994 * 109.47380 * 300.00499 * 11 9 8 40 40 H 1.08998 * 109.46558 * 60.00245 * 11 9 8 41 41 H 1.09001 * 109.47291 * 180.02562 * 12 11 9 42 42 H 1.09000 * 109.47435 * 300.00992 * 12 11 9 43 43 H 1.09001 * 109.46747 * 59.99260 * 13 12 11 44 44 H 1.08994 * 109.47433 * 179.97438 * 13 12 11 45 45 H 1.08998 * 109.46555 * 179.97438 * 14 13 12 46 46 H 1.09006 * 109.46711 * 299.99594 * 14 13 12 47 47 H 1.09004 * 109.47111 * 55.00504 * 17 15 14 48 48 H 1.09005 * 109.47195 * 175.00181 * 17 15 14 49 49 H 0.97000 * 120.00470 * 0.02562 * 20 18 17 50 50 H 0.96994 * 120.00626 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1857 6 6 1.6521 -1.9723 1.3385 7 8 0.9508 -2.5094 0.5042 8 7 2.0680 -2.6655 2.4169 9 6 1.6738 -4.0667 2.5835 10 1 1.6265 -4.5493 1.6073 11 6 0.2995 -4.1338 3.2528 12 6 -0.1123 -5.5970 3.4262 13 6 0.9166 -6.3163 4.3009 14 6 2.2909 -6.2491 3.6316 15 6 2.7027 -4.7858 3.4581 16 1 2.7502 -4.3036 4.4345 17 6 4.0772 -4.7188 2.7894 18 6 5.1119 -5.3182 3.7066 19 8 4.7824 -5.7555 4.7889 20 7 6.4032 -5.3682 3.3242 21 6 7.3445 -5.9140 4.1584 22 1 7.0512 -6.3034 5.1221 23 6 8.6760 -5.9651 3.7645 24 7 9.0331 -5.4908 2.5921 25 14 9.9583 -6.7094 4.9007 26 1 9.3039 -7.1686 6.1522 27 1 10.6057 -7.8639 4.2277 28 1 10.9847 -5.6867 5.2259 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9562 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.6766 -1.7490 -1.2491 36 1 1.6767 -0.2075 -2.1392 37 1 3.1300 -0.7217 -1.2489 38 1 2.6275 -2.2367 3.0830 39 1 0.3468 -3.6511 4.2289 40 1 -0.4335 -3.6218 2.6295 41 1 -1.0915 -5.6448 3.9026 42 1 -0.1597 -6.0793 2.4499 43 1 0.9640 -5.8339 5.2772 44 1 0.6229 -7.3586 4.4248 45 1 3.0239 -6.7611 4.2549 46 1 2.2434 -6.7314 2.6552 47 1 4.0537 -5.2775 1.8537 48 1 4.3315 -3.6787 2.5852 49 1 6.6668 -5.0181 2.4588 50 1 9.9624 -5.5268 2.3168 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495910730.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:30 Heat of formation + Delta-G solvation = -152.148247 kcal Electronic energy + Delta-G solvation = -29198.264306 eV Core-core repulsion = 25224.242023 eV Total energy + Delta-G solvation = -3974.022283 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.87597 -39.40829 -37.84888 -36.78080 -34.51392 -34.01506 -33.72688 -32.05748 -31.19535 -29.42409 -27.57554 -27.51410 -27.06043 -24.52863 -23.37964 -21.84058 -21.18118 -20.33484 -19.59644 -19.02480 -18.04494 -17.80714 -16.78180 -16.16240 -15.94903 -15.48508 -14.84120 -14.67773 -14.52249 -14.49010 -14.23376 -13.89755 -13.69206 -13.62751 -13.49407 -12.78381 -12.70198 -12.58009 -12.37080 -12.07759 -12.03938 -12.02123 -11.93123 -11.59244 -11.50804 -11.42964 -11.40122 -11.12172 -11.01797 -10.71364 -10.46486 -10.35528 -10.34464 -10.29318 -10.19980 -10.09949 -9.94016 -9.48411 -9.05465 -8.30991 -7.96545 -6.42557 -3.83473 2.18013 2.87671 3.15236 3.26015 3.32867 3.90691 4.11034 4.16068 4.56434 4.60703 4.62412 4.75008 4.83649 4.98538 5.14519 5.22667 5.28878 5.32340 5.36519 5.37231 5.44538 5.51146 5.51993 5.57484 5.60359 5.64414 5.70688 5.70801 5.81509 5.85401 5.99033 6.03640 6.10605 6.13998 6.16994 6.20226 6.23906 6.32056 6.38341 6.46215 6.48251 6.58097 6.72554 6.87192 7.48082 7.54437 8.05376 8.42178 8.59849 9.16795 9.54508 10.05277 10.75081 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.011471 B = 0.003244 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.397580 B = 8628.820807 C =10653.256525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.137 3.863 3 C -0.141 4.141 4 C -0.184 4.184 5 O -0.366 6.366 6 C 0.651 3.349 7 O -0.571 6.571 8 N -0.703 5.703 9 C 0.166 3.834 10 H 0.090 0.910 11 C -0.128 4.128 12 C -0.115 4.115 13 C -0.119 4.119 14 C -0.115 4.115 15 C -0.069 4.069 16 H 0.083 0.917 17 C -0.129 4.129 18 C 0.441 3.559 19 O -0.593 6.593 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.104 0.896 23 C 0.022 3.978 24 N -0.900 5.900 25 Si 0.928 3.072 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.406 0.594 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.098 0.902 46 H 0.054 0.946 47 H 0.077 0.923 48 H 0.075 0.925 49 H 0.392 0.608 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.726 9.746 -5.367 20.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.100 3.900 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.281 6.281 6 C 0.404 3.596 7 O -0.461 6.461 8 N -0.361 5.361 9 C 0.063 3.937 10 H 0.108 0.892 11 C -0.166 4.166 12 C -0.153 4.153 13 C -0.157 4.157 14 C -0.152 4.152 15 C -0.088 4.088 16 H 0.101 0.899 17 C -0.170 4.170 18 C 0.228 3.772 19 O -0.479 6.479 20 N -0.198 5.198 21 C -0.430 4.430 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.542 5.542 25 Si 0.755 3.245 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.107 0.893 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.241 0.759 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.116 0.884 46 H 0.073 0.927 47 H 0.095 0.905 48 H 0.094 0.906 49 H 0.225 0.775 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.090 9.268 -5.207 20.126 hybrid contribution 1.202 0.205 0.097 1.223 sum -15.888 9.472 -5.110 19.190 Atomic orbital electron populations 1.22509 0.94167 1.05038 1.02240 1.22025 0.94197 0.91504 0.82303 1.21861 1.02437 0.92623 1.02918 1.22520 1.01788 1.03527 0.96296 1.86318 1.71646 1.23876 1.46263 1.18108 0.78828 0.80389 0.82292 1.90875 1.41396 1.70342 1.43501 1.44955 1.54999 1.12746 1.23404 1.21156 0.93956 0.78147 1.00448 0.89154 1.21920 0.96440 0.97406 1.00862 1.21506 0.98584 0.94826 1.00393 1.21564 0.95028 1.00036 0.99040 1.21675 0.97170 0.95107 1.01278 1.21080 0.92006 0.97012 0.98698 0.89862 1.21565 0.94405 1.01660 0.99323 1.19882 0.83480 0.85355 0.88524 1.90474 1.80399 1.52983 1.24037 1.41942 1.05776 1.53261 1.18802 1.19763 0.86974 1.35558 1.00681 0.87858 1.25273 0.98239 0.97654 0.96796 1.69621 1.18683 1.46229 1.19636 0.85818 0.80107 0.78520 0.80009 1.19226 1.20759 1.20770 0.92331 0.91329 0.89324 0.91347 0.90287 0.91559 0.89283 0.91334 0.92011 0.75892 0.91711 0.91720 0.92111 0.91898 0.91901 0.92131 0.88351 0.92687 0.90497 0.90640 0.77455 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.80 8.37 37.16 0.31 -1.49 16 2 C 0.14 1.45 1.13 -90.62 -0.10 1.34 16 3 C -0.14 -1.14 8.85 37.16 0.33 -0.81 16 4 C -0.18 -1.96 8.37 37.16 0.31 -1.65 16 5 O -0.37 -4.69 9.94 -40.32 -0.40 -5.09 16 6 C 0.65 8.97 8.02 54.05 0.43 9.40 16 7 O -0.57 -8.78 11.54 -19.28 -0.22 -9.00 16 8 N -0.70 -8.86 4.31 -58.72 -0.25 -9.12 16 9 C 0.17 2.14 1.90 -67.92 -0.13 2.01 16 10 H 0.09 1.27 7.58 -51.93 -0.39 0.88 16 11 C -0.13 -1.48 5.49 -26.73 -0.15 -1.63 16 12 C -0.11 -1.25 5.92 -26.73 -0.16 -1.41 16 13 C -0.12 -1.46 5.92 -26.72 -0.16 -1.62 16 14 C -0.11 -1.70 4.95 -26.73 -0.13 -1.83 16 15 C -0.07 -1.01 1.41 -90.62 -0.13 -1.13 16 16 H 0.08 1.31 7.95 -51.93 -0.41 0.89 16 17 C -0.13 -2.18 5.09 -27.88 -0.14 -2.32 16 18 C 0.44 9.95 7.50 -10.99 -0.08 9.87 16 19 O -0.59 -14.96 13.54 5.54 0.08 -14.88 16 20 N -0.56 -14.06 5.29 -10.96 -0.06 -14.12 16 21 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 22 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.48 13.05 55.50 0.72 -23.76 16 25 Si 0.93 20.92 29.55 -169.99 -5.02 15.89 16 26 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.09 1.07 5.88 -51.93 -0.31 0.77 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.09 1.15 5.88 -51.93 -0.31 0.84 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.41 4.70 8.51 -40.82 -0.35 4.36 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.10 1.81 5.95 -51.93 -0.31 1.50 16 46 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 47 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 48 H 0.08 1.19 7.31 -51.93 -0.38 0.81 16 49 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 50 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 391.21 15.07 5.90 5.90 Total: -1.00 -30.46 391.21 -7.93 -38.39 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: -8.63 Total: 14.99 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -0.04 Total: 0.81 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: 0.41 Total: -46.99 kcal Atomic # 8 Polarization: -28.43 SS G_CDS: -0.55 Total: -28.98 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.46 -7.93 -38.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495910730.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.761 kcal (2) G-P(sol) polarization free energy of solvation -30.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds