Wall clock time and date at job start Tue Mar 31 2020 14:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.52997 * 109.47232 * 239.99603 * 2 1 3 5 5 O 1.45206 * 109.46989 * 119.99587 * 2 1 3 6 6 C 1.34639 * 116.99892 * 59.99951 * 5 2 1 7 7 O 1.21513 * 119.99857 * 359.97438 * 6 5 2 8 8 N 1.34773 * 119.99616 * 179.97438 * 6 5 2 9 9 C 1.46507 * 119.99575 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.47046 * 35.00111 * 9 8 6 11 11 C 1.53006 * 109.47117 * 274.99911 * 9 8 6 12 12 C 1.52993 * 109.47073 * 179.97438 * 11 9 8 13 13 C 1.53007 * 109.47137 * 60.00415 * 12 11 9 14 14 C 1.53009 * 109.46797 * 300.00125 * 13 12 11 15 15 C 1.52998 * 109.47348 * 59.99673 * 14 13 12 16 16 H 1.09000 * 109.46906 * 60.00115 * 15 14 13 17 17 C 1.52996 * 109.46994 * 179.97438 * 15 14 13 18 18 C 1.50703 * 109.47447 * 295.00116 * 17 15 14 19 19 O 1.21296 * 119.99471 * 359.97438 * 18 17 15 20 20 N 1.34769 * 119.99884 * 179.97438 * 18 17 15 21 21 C 1.37104 * 119.99561 * 180.02562 * 20 18 17 22 22 H 1.07997 * 120.00266 * 359.97438 * 21 20 18 23 23 C 1.38952 * 119.99922 * 180.02562 * 21 20 18 24 24 N 1.31416 * 120.00183 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00228 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.46950 * 359.97438 * 25 23 21 27 27 H 1.48493 * 109.47337 * 119.99731 * 25 23 21 28 28 H 1.48498 * 109.46971 * 240.00015 * 25 23 21 29 29 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 30 30 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 31 31 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 34 34 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 35 35 H 1.09001 * 109.46832 * 300.00199 * 4 2 1 36 36 H 1.09002 * 109.47153 * 60.00008 * 4 2 1 37 37 H 1.08996 * 109.46952 * 180.02562 * 4 2 1 38 38 H 0.96996 * 120.00663 * 0.02562 * 8 6 5 39 39 H 1.08994 * 109.47380 * 300.00499 * 11 9 8 40 40 H 1.08998 * 109.46558 * 60.00245 * 11 9 8 41 41 H 1.09001 * 109.47291 * 180.02562 * 12 11 9 42 42 H 1.09000 * 109.47435 * 300.00992 * 12 11 9 43 43 H 1.09001 * 109.46747 * 59.99260 * 13 12 11 44 44 H 1.08994 * 109.47433 * 179.97438 * 13 12 11 45 45 H 1.08998 * 109.46555 * 179.97438 * 14 13 12 46 46 H 1.09006 * 109.46711 * 299.99594 * 14 13 12 47 47 H 1.09004 * 109.47111 * 55.00504 * 17 15 14 48 48 H 1.09005 * 109.47195 * 175.00181 * 17 15 14 49 49 H 0.97000 * 120.00470 * 0.02562 * 20 18 17 50 50 H 0.96994 * 120.00626 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1857 6 6 1.6521 -1.9723 1.3385 7 8 0.9508 -2.5094 0.5042 8 7 2.0680 -2.6655 2.4169 9 6 1.6738 -4.0667 2.5835 10 1 1.6265 -4.5493 1.6073 11 6 0.2995 -4.1338 3.2528 12 6 -0.1123 -5.5970 3.4262 13 6 0.9166 -6.3163 4.3009 14 6 2.2909 -6.2491 3.6316 15 6 2.7027 -4.7858 3.4581 16 1 2.7502 -4.3036 4.4345 17 6 4.0772 -4.7188 2.7894 18 6 5.1119 -5.3182 3.7066 19 8 4.7824 -5.7555 4.7889 20 7 6.4032 -5.3682 3.3242 21 6 7.3445 -5.9140 4.1584 22 1 7.0512 -6.3034 5.1221 23 6 8.6760 -5.9651 3.7645 24 7 9.0331 -5.4908 2.5921 25 14 9.9583 -6.7094 4.9007 26 1 9.3039 -7.1686 6.1522 27 1 10.6057 -7.8639 4.2277 28 1 10.9847 -5.6867 5.2259 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9562 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.6766 -1.7490 -1.2491 36 1 1.6767 -0.2075 -2.1392 37 1 3.1300 -0.7217 -1.2489 38 1 2.6275 -2.2367 3.0830 39 1 0.3468 -3.6511 4.2289 40 1 -0.4335 -3.6218 2.6295 41 1 -1.0915 -5.6448 3.9026 42 1 -0.1597 -6.0793 2.4499 43 1 0.9640 -5.8339 5.2772 44 1 0.6229 -7.3586 4.4248 45 1 3.0239 -6.7611 4.2549 46 1 2.2434 -6.7314 2.6552 47 1 4.0537 -5.2775 1.8537 48 1 4.3315 -3.6787 2.5852 49 1 6.6668 -5.0181 2.4588 50 1 9.9624 -5.5268 2.3168 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495910730.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:29 Heat of formation + Delta-G solvation = -170.974375 kcal Electronic energy + Delta-G solvation = -29199.080668 eV Core-core repulsion = 25224.242023 eV Total energy + Delta-G solvation = -3974.838645 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.90446 -40.74054 -39.40122 -37.83166 -35.98476 -35.52442 -34.64313 -33.47120 -33.10194 -30.49000 -28.53756 -28.31721 -28.25890 -26.36435 -24.39735 -23.04784 -22.25059 -21.34786 -20.84711 -20.57140 -19.81227 -19.05745 -17.88368 -17.51506 -17.09946 -16.66812 -16.51762 -16.09913 -15.86767 -15.63473 -15.37376 -15.17242 -15.00703 -14.79267 -14.46018 -14.14626 -13.88152 -13.60899 -13.50692 -13.29720 -13.10400 -12.97489 -12.95608 -12.86437 -12.82299 -12.62076 -12.47294 -12.39336 -12.27430 -12.14318 -12.07435 -11.85607 -11.52774 -11.44638 -11.39202 -11.32933 -11.16981 -10.97747 -10.25209 -10.06508 -9.95986 -8.46055 -5.94608 1.21770 1.36325 1.41490 1.55553 1.81743 2.07235 2.29829 3.13553 3.19100 3.21539 3.71213 3.77832 3.79993 3.84545 3.96820 3.99175 4.18170 4.23800 4.33751 4.42612 4.46002 4.52425 4.60246 4.64421 4.65588 4.73627 4.77613 4.80566 4.81409 4.88227 4.91528 4.96386 5.05123 5.11848 5.17758 5.24298 5.28990 5.31580 5.32744 5.36580 5.41720 5.44601 5.58965 5.59930 5.63280 6.01503 6.44777 6.59773 7.13340 7.38929 7.57992 8.12556 8.71682 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.011471 B = 0.003244 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.397580 B = 8628.820807 C =10653.256525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.124 3.876 3 C -0.137 4.137 4 C -0.181 4.181 5 O -0.373 6.373 6 C 0.649 3.351 7 O -0.589 6.589 8 N -0.700 5.700 9 C 0.177 3.823 10 H 0.082 0.918 11 C -0.122 4.122 12 C -0.109 4.109 13 C -0.114 4.114 14 C -0.114 4.114 15 C -0.059 4.059 16 H 0.074 0.926 17 C -0.118 4.118 18 C 0.443 3.557 19 O -0.620 6.620 20 N -0.577 5.577 21 C -0.331 4.331 22 H 0.081 0.919 23 C -0.015 4.015 24 N -0.923 5.923 25 Si 0.992 3.008 26 H -0.272 1.272 27 H -0.272 1.272 28 H -0.272 1.272 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.103 0.897 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.091 0.909 37 H 0.056 0.944 38 H 0.411 0.589 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.081 0.919 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.070 0.930 45 H 0.060 0.940 46 H 0.061 0.939 47 H 0.088 0.912 48 H 0.091 0.909 49 H 0.394 0.606 50 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.650 10.798 -5.866 21.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.088 3.912 3 C -0.194 4.194 4 C -0.238 4.238 5 O -0.288 6.288 6 C 0.402 3.598 7 O -0.480 6.480 8 N -0.358 5.358 9 C 0.074 3.926 10 H 0.100 0.900 11 C -0.160 4.160 12 C -0.147 4.147 13 C -0.151 4.151 14 C -0.152 4.152 15 C -0.079 4.079 16 H 0.092 0.908 17 C -0.158 4.158 18 C 0.231 3.769 19 O -0.507 6.507 20 N -0.213 5.213 21 C -0.460 4.460 22 H 0.099 0.901 23 C -0.215 4.215 24 N -0.564 5.564 25 Si 0.816 3.184 26 H -0.196 1.196 27 H -0.198 1.198 28 H -0.197 1.197 29 H 0.081 0.919 30 H 0.109 0.891 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.121 0.879 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.110 0.890 37 H 0.075 0.925 38 H 0.247 0.753 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.099 0.901 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.089 0.911 45 H 0.078 0.922 46 H 0.079 0.921 47 H 0.107 0.893 48 H 0.109 0.891 49 H 0.227 0.773 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.022 10.337 -5.713 21.547 hybrid contribution 1.443 -0.100 0.227 1.464 sum -16.578 10.237 -5.486 20.242 Atomic orbital electron populations 1.22450 0.93610 1.03793 1.03549 1.22405 0.94825 0.92567 0.81440 1.21890 1.02248 0.90905 1.04336 1.22483 1.01420 1.02378 0.97526 1.86330 1.71737 1.23294 1.47411 1.18199 0.78673 0.80746 0.82157 1.90873 1.42173 1.70809 1.44107 1.44919 1.54981 1.12575 1.23371 1.20976 0.94040 0.78049 0.99561 0.89982 1.21873 0.95201 0.98083 1.00875 1.21473 0.98920 0.93884 1.00389 1.21513 0.93739 1.01006 0.98847 1.21598 0.97850 0.94675 1.01078 1.20983 0.91208 0.97306 0.98365 0.90781 1.21539 0.93734 1.02061 0.98477 1.20820 0.83584 0.83811 0.88673 1.90461 1.80877 1.53713 1.25638 1.42037 1.06403 1.54108 1.18753 1.19728 0.88342 1.37288 1.00675 0.90063 1.26048 0.99552 0.97645 0.98218 1.69688 1.19394 1.46630 1.20670 0.84883 0.77543 0.78060 0.77941 1.19607 1.19771 1.19714 0.91945 0.89099 0.91744 0.91668 0.87862 0.91149 0.91793 0.89007 0.92493 0.75287 0.91135 0.91835 0.90076 0.91604 0.92213 0.91107 0.92181 0.92075 0.89336 0.89110 0.77291 0.91414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.21 8.37 71.98 0.60 -2.61 16 2 C 0.12 2.44 1.13 -10.80 -0.01 2.43 16 3 C -0.14 -1.89 8.85 71.98 0.64 -1.25 16 4 C -0.18 -3.64 8.37 71.98 0.60 -3.04 16 5 O -0.37 -9.22 9.94 -55.49 -0.55 -9.77 16 6 C 0.65 17.45 8.02 129.79 1.04 18.49 16 7 O -0.59 -17.85 11.54 19.80 0.23 -17.62 16 8 N -0.70 -17.05 4.31 -570.11 -2.46 -19.51 16 9 C 0.18 4.38 1.90 44.99 0.09 4.47 16 10 H 0.08 2.23 7.58 -2.39 -0.02 2.21 16 11 C -0.12 -2.62 5.49 30.59 0.17 -2.46 16 12 C -0.11 -2.14 5.92 30.59 0.18 -1.96 16 13 C -0.11 -2.65 5.92 30.60 0.18 -2.47 16 14 C -0.11 -3.38 4.95 30.60 0.15 -3.23 16 15 C -0.06 -1.72 1.41 -10.80 -0.02 -1.73 16 16 H 0.07 2.31 7.95 -2.39 -0.02 2.30 16 17 C -0.12 -3.98 5.09 29.85 0.15 -3.82 16 18 C 0.44 20.43 7.50 87.66 0.66 21.08 16 19 O -0.62 -32.25 13.54 -3.08 -0.04 -32.29 16 20 N -0.58 -29.55 5.29 -306.98 -1.62 -31.18 16 21 C -0.33 -18.68 9.68 84.04 0.81 -17.87 16 22 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 23 C -0.02 -0.82 5.50 84.93 0.47 -0.35 16 24 N -0.92 -50.27 13.05 21.66 0.28 -49.99 16 25 Si 0.99 42.98 29.55 68.60 2.03 45.01 16 26 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 27 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 28 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 29 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.06 1.52 5.88 -2.39 -0.01 1.50 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.06 1.63 5.88 -2.39 -0.01 1.62 16 36 H 0.09 1.36 8.14 -2.39 -0.02 1.35 16 37 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.41 9.16 8.51 -92.71 -0.79 8.38 16 39 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.06 2.27 5.95 -2.39 -0.01 2.26 16 46 H 0.06 1.70 8.14 -2.38 -0.02 1.69 16 47 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 48 H 0.09 2.81 7.31 -2.38 -0.02 2.79 16 49 H 0.39 19.57 7.90 -92.71 -0.73 18.84 16 50 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 Total: -1.00 -66.67 391.21 3.00 -63.67 By element: Atomic # 1 Polarization: 46.59 SS G_CDS: -0.58 Total: 46.01 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: 5.71 Total: 5.67 kcal Atomic # 7 Polarization: -96.87 SS G_CDS: -3.80 Total: -100.67 kcal Atomic # 8 Polarization: -59.32 SS G_CDS: -0.36 Total: -59.69 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -66.67 3.00 -63.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495910730.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.306 kcal (2) G-P(sol) polarization free energy of solvation -66.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds