Wall clock time and date at job start Tue Mar 31 2020 14:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47103 * 2 1 4 4 C 1.53002 * 109.47227 * 239.99743 * 2 1 3 5 5 O 1.45201 * 109.46987 * 119.99492 * 2 1 3 6 6 C 1.34645 * 116.99654 * 60.00658 * 5 2 1 7 7 O 1.21514 * 119.99983 * 359.97438 * 6 5 2 8 8 N 1.34773 * 119.99804 * 179.97438 * 6 5 2 9 9 C 1.46500 * 119.99955 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.47175 * 325.00036 * 9 8 6 11 11 C 1.52997 * 109.47204 * 85.00142 * 9 8 6 12 12 C 1.53002 * 109.46978 * 59.99799 * 11 9 8 13 13 C 1.52996 * 109.46891 * 60.00410 * 12 11 9 14 14 C 1.53000 * 109.47328 * 299.99597 * 13 12 11 15 15 C 1.52997 * 109.47060 * 60.00126 * 14 13 12 16 16 H 1.08998 * 109.47533 * 59.99948 * 15 14 13 17 17 C 1.52992 * 109.47482 * 180.02562 * 15 14 13 18 18 C 1.50697 * 109.47463 * 295.00146 * 17 15 14 19 19 O 1.21294 * 119.99495 * 0.02562 * 18 17 15 20 20 N 1.34781 * 120.00631 * 179.97438 * 18 17 15 21 21 C 1.37096 * 119.99991 * 179.97438 * 20 18 17 22 22 H 1.07995 * 120.00136 * 0.02562 * 21 20 18 23 23 C 1.38955 * 119.99648 * 180.02562 * 21 20 18 24 24 N 1.31413 * 119.99667 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 120.00000 * 0.02562 * 23 21 20 26 26 H 1.48504 * 109.46906 * 89.99727 * 25 23 21 27 27 H 1.48494 * 109.47218 * 209.99769 * 25 23 21 28 28 H 1.48504 * 109.47120 * 330.00074 * 25 23 21 29 29 H 1.09006 * 109.47457 * 300.00139 * 1 2 3 30 30 H 1.09005 * 109.47292 * 60.00419 * 1 2 3 31 31 H 1.09000 * 109.47609 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47292 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.46811 * 299.99437 * 3 2 1 34 34 H 1.09001 * 109.47209 * 60.00086 * 3 2 1 35 35 H 1.08990 * 109.47204 * 300.00097 * 4 2 1 36 36 H 1.08997 * 109.46587 * 60.00085 * 4 2 1 37 37 H 1.09002 * 109.46857 * 179.97438 * 4 2 1 38 38 H 0.97001 * 120.00163 * 359.97438 * 8 6 5 39 39 H 1.09002 * 109.47045 * 299.99966 * 11 9 8 40 40 H 1.09001 * 109.47375 * 179.97438 * 11 9 8 41 41 H 1.08992 * 109.47056 * 300.00064 * 12 11 9 42 42 H 1.09004 * 109.47006 * 180.02562 * 12 11 9 43 43 H 1.09004 * 109.47368 * 179.97438 * 13 12 11 44 44 H 1.09001 * 109.47372 * 59.99964 * 13 12 11 45 45 H 1.09002 * 109.47398 * 180.02562 * 14 13 12 46 46 H 1.09001 * 109.47194 * 300.00476 * 14 13 12 47 47 H 1.09002 * 109.46906 * 55.00224 * 17 15 14 48 48 H 1.09006 * 109.47717 * 174.99599 * 17 15 14 49 49 H 0.96996 * 119.99210 * 0.02562 * 20 18 17 50 50 H 0.97002 * 119.99499 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0139 -0.6844 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9509 -2.5095 0.5040 8 7 2.0679 -2.6656 2.4167 9 6 1.6739 -4.0668 2.5832 10 1 0.6646 -4.2087 2.1970 11 6 2.6452 -4.9646 1.8142 12 6 4.0620 -4.7653 2.3563 13 6 4.0959 -5.1316 3.8414 14 6 3.1247 -4.2339 4.6105 15 6 1.7079 -4.4331 4.0684 16 1 1.4147 -5.4755 4.1922 17 6 0.7367 -3.5349 4.8370 18 6 0.6780 -3.9750 6.2771 19 8 1.3476 -4.9144 6.6519 20 7 -0.1177 -3.3242 7.1489 21 6 -0.1714 -3.7250 8.4589 22 1 0.4242 -4.5619 8.7924 23 6 -0.9921 -3.0543 9.3574 24 7 -1.0440 -3.4388 10.6130 25 14 -2.0228 -1.6072 8.7803 26 1 -3.3468 -2.0956 8.3181 27 1 -2.2112 -0.6545 9.9037 28 1 -1.3297 -0.9212 7.6603 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6766 1.9564 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6766 -0.2075 -2.1391 37 1 3.1300 -0.7209 -1.2494 38 1 2.6281 -2.2369 3.0826 39 1 2.6210 -4.7036 0.7562 40 1 2.3523 -6.0071 1.9384 41 1 4.3551 -3.7228 2.2324 42 1 4.7541 -5.4046 1.8081 43 1 5.1054 -4.9901 4.2276 44 1 3.8028 -6.1741 3.9653 45 1 3.1492 -4.4945 5.6686 46 1 3.4178 -3.1913 4.4867 47 1 1.0800 -2.5016 4.7866 48 1 -0.2562 -3.6099 4.3934 49 1 -0.6528 -2.5728 6.8492 50 1 -1.6172 -2.9709 11.2402 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495910731.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:35 Heat of formation + Delta-G solvation = -142.131201 kcal Electronic energy + Delta-G solvation = -29501.791468 eV Core-core repulsion = 25528.203557 eV Total energy + Delta-G solvation = -3973.587911 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.01278 -39.61945 -38.07406 -36.77493 -34.41859 -34.07963 -33.44621 -32.21425 -31.63981 -29.83762 -27.63752 -27.57907 -27.25890 -24.41254 -23.31851 -22.13542 -21.58107 -20.21526 -19.31132 -19.06258 -18.35798 -18.17916 -16.62131 -16.28444 -15.91247 -15.33117 -15.17275 -14.99550 -14.67463 -14.57847 -14.43455 -13.94318 -13.84081 -13.64606 -13.16180 -12.80000 -12.73964 -12.51516 -12.44043 -12.37810 -12.17839 -12.10606 -12.04863 -11.84432 -11.73927 -11.59490 -11.47913 -11.40781 -11.14697 -10.80712 -10.60132 -10.52443 -10.40670 -10.28394 -10.10252 -9.99333 -9.92417 -9.54636 -9.10900 -8.45730 -8.18554 -6.33029 -3.84147 2.13020 2.82118 3.02159 3.06533 3.14567 3.72985 4.07484 4.09061 4.44115 4.50170 4.54376 4.68658 4.74980 4.83485 4.96433 5.16399 5.22833 5.23720 5.28413 5.30711 5.34094 5.43023 5.45364 5.52096 5.55452 5.60576 5.64170 5.64455 5.71626 5.75747 5.84526 5.94183 5.96161 6.02798 6.07465 6.10743 6.11669 6.26387 6.28359 6.32144 6.42251 6.50752 6.62060 6.79011 7.42403 7.55425 8.13755 8.36417 8.57346 8.93238 9.41633 9.81403 10.80062 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.011598 B = 0.003559 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.730040 B = 7866.101401 C = 9743.423808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.137 3.863 3 C -0.141 4.141 4 C -0.182 4.182 5 O -0.367 6.367 6 C 0.649 3.351 7 O -0.572 6.572 8 N -0.698 5.698 9 C 0.167 3.833 10 H 0.091 0.909 11 C -0.130 4.130 12 C -0.117 4.117 13 C -0.118 4.118 14 C -0.121 4.121 15 C -0.071 4.071 16 H 0.097 0.903 17 C -0.131 4.131 18 C 0.450 3.550 19 O -0.574 6.574 20 N -0.590 5.590 21 C -0.306 4.306 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.881 5.881 25 Si 0.878 3.122 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.269 1.269 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.405 0.595 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.059 0.941 44 H 0.064 0.936 45 H 0.098 0.902 46 H 0.048 0.952 47 H 0.076 0.924 48 H 0.078 0.922 49 H 0.371 0.629 50 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.766 7.046 -22.811 24.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.198 4.198 4 C -0.240 4.240 5 O -0.282 6.282 6 C 0.402 3.598 7 O -0.462 6.462 8 N -0.358 5.358 9 C 0.063 3.937 10 H 0.109 0.891 11 C -0.168 4.168 12 C -0.155 4.155 13 C -0.155 4.155 14 C -0.158 4.158 15 C -0.090 4.090 16 H 0.115 0.885 17 C -0.172 4.172 18 C 0.237 3.763 19 O -0.458 6.458 20 N -0.228 5.228 21 C -0.435 4.435 22 H 0.138 0.862 23 C -0.161 4.161 24 N -0.521 5.521 25 Si 0.705 3.295 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.195 1.195 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.242 0.758 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.116 0.884 46 H 0.067 0.933 47 H 0.094 0.906 48 H 0.097 0.903 49 H 0.203 0.797 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.763 6.246 -22.783 24.572 hybrid contribution -0.750 1.533 -0.015 1.707 sum 6.013 7.779 -22.797 24.827 Atomic orbital electron populations 1.22522 0.94015 1.05174 1.02413 1.22020 0.94365 0.91444 0.82174 1.21863 1.02185 0.92702 1.03090 1.22506 1.01424 1.03575 0.96446 1.86312 1.71596 1.23944 1.46326 1.18133 0.78827 0.80300 0.82491 1.90877 1.41396 1.70540 1.43349 1.44980 1.55033 1.12548 1.23254 1.21110 0.98933 0.77578 0.96042 0.89126 1.21928 0.95349 0.99888 0.99640 1.21519 0.96311 1.01259 0.96423 1.21536 0.99328 1.00340 0.94314 1.21727 0.92888 0.98393 1.02784 1.21135 0.95990 1.01222 0.90659 0.88453 1.21604 1.00460 1.00301 0.94827 1.19793 0.83788 0.85885 0.86833 1.90516 1.45702 1.30299 1.79287 1.42280 1.40327 1.30200 1.09959 1.19449 1.25422 1.16325 0.82279 0.86246 1.25047 0.97704 0.98150 0.95223 1.69624 1.38866 1.40899 1.02707 0.86691 0.81190 0.82728 0.78922 1.19601 1.20163 1.19489 0.92120 0.91321 0.89256 0.91540 0.90267 0.91420 0.89300 0.91335 0.92308 0.75847 0.91630 0.90641 0.92333 0.92392 0.92250 0.91716 0.88374 0.93307 0.90566 0.90309 0.79675 0.91612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.82 8.37 37.15 0.31 -1.51 16 2 C 0.14 1.35 1.13 -90.62 -0.10 1.25 16 3 C -0.14 -1.04 8.85 37.16 0.33 -0.71 16 4 C -0.18 -1.70 8.37 37.16 0.31 -1.39 16 5 O -0.37 -4.38 9.94 -40.34 -0.40 -4.78 16 6 C 0.65 8.35 8.02 54.05 0.43 8.78 16 7 O -0.57 -8.31 11.54 -19.28 -0.22 -8.53 16 8 N -0.70 -8.09 3.62 -58.72 -0.21 -8.30 16 9 C 0.17 1.98 2.23 -67.93 -0.15 1.82 16 10 H 0.09 1.16 7.58 -51.93 -0.39 0.76 16 11 C -0.13 -1.40 5.60 -26.73 -0.15 -1.55 16 12 C -0.12 -1.21 5.77 -26.73 -0.15 -1.36 16 13 C -0.12 -1.36 5.92 -26.73 -0.16 -1.52 16 14 C -0.12 -1.65 4.77 -26.73 -0.13 -1.77 16 15 C -0.07 -0.97 1.63 -90.62 -0.15 -1.12 16 16 H 0.10 1.45 7.96 -51.93 -0.41 1.04 16 17 C -0.13 -2.04 4.94 -27.89 -0.14 -2.18 16 18 C 0.45 9.69 7.50 -10.98 -0.08 9.61 16 19 O -0.57 -14.25 13.54 5.55 0.08 -14.17 16 20 N -0.59 -13.80 5.09 -10.96 -0.06 -13.85 16 21 C -0.31 -8.54 10.16 -14.93 -0.15 -8.69 16 22 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 23 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 24 N -0.88 -25.61 13.96 55.50 0.77 -24.84 16 25 Si 0.88 19.40 27.74 -169.99 -4.71 14.68 16 26 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 27 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 28 H -0.27 -5.46 6.52 56.52 0.37 -5.09 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.09 1.09 5.88 -51.93 -0.31 0.78 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.09 1.03 5.88 -51.93 -0.31 0.72 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.41 4.38 6.78 -40.82 -0.28 4.10 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.61 7.60 -51.93 -0.39 0.21 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.10 1.72 5.95 -51.93 -0.31 1.41 16 46 H 0.05 0.60 6.51 -51.93 -0.34 0.26 16 47 H 0.08 1.08 7.61 -51.93 -0.39 0.68 16 48 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 49 H 0.37 7.75 5.76 -40.82 -0.24 7.52 16 50 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 383.97 15.07 5.79 5.79 Total: -1.00 -31.51 383.97 -7.46 -38.97 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: -8.42 Total: 14.32 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -0.07 Total: 0.70 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: 0.51 Total: -46.99 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -0.55 Total: -27.49 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -4.71 Total: 14.68 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.51 -7.46 -38.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495910731.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.157 kcal (2) G-P(sol) polarization free energy of solvation -31.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds