Wall clock time and date at job start Tue Mar 31 2020 14:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47103 * 2 1 4 4 C 1.53002 * 109.47227 * 239.99743 * 2 1 3 5 5 O 1.45201 * 109.46987 * 119.99492 * 2 1 3 6 6 C 1.34645 * 116.99654 * 60.00658 * 5 2 1 7 7 O 1.21514 * 119.99983 * 359.97438 * 6 5 2 8 8 N 1.34773 * 119.99804 * 179.97438 * 6 5 2 9 9 C 1.46500 * 119.99955 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.47175 * 325.00036 * 9 8 6 11 11 C 1.52997 * 109.47204 * 85.00142 * 9 8 6 12 12 C 1.53002 * 109.46978 * 59.99799 * 11 9 8 13 13 C 1.52996 * 109.46891 * 60.00410 * 12 11 9 14 14 C 1.53000 * 109.47328 * 299.99597 * 13 12 11 15 15 C 1.52997 * 109.47060 * 60.00126 * 14 13 12 16 16 H 1.08998 * 109.47533 * 59.99948 * 15 14 13 17 17 C 1.52992 * 109.47482 * 180.02562 * 15 14 13 18 18 C 1.50697 * 109.47463 * 295.00146 * 17 15 14 19 19 O 1.21294 * 119.99495 * 0.02562 * 18 17 15 20 20 N 1.34781 * 120.00631 * 179.97438 * 18 17 15 21 21 C 1.37096 * 119.99991 * 179.97438 * 20 18 17 22 22 H 1.07995 * 120.00136 * 0.02562 * 21 20 18 23 23 C 1.38955 * 119.99648 * 180.02562 * 21 20 18 24 24 N 1.31413 * 119.99667 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 120.00000 * 0.02562 * 23 21 20 26 26 H 1.48504 * 109.46906 * 89.99727 * 25 23 21 27 27 H 1.48494 * 109.47218 * 209.99769 * 25 23 21 28 28 H 1.48504 * 109.47120 * 330.00074 * 25 23 21 29 29 H 1.09006 * 109.47457 * 300.00139 * 1 2 3 30 30 H 1.09005 * 109.47292 * 60.00419 * 1 2 3 31 31 H 1.09000 * 109.47609 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47292 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.46811 * 299.99437 * 3 2 1 34 34 H 1.09001 * 109.47209 * 60.00086 * 3 2 1 35 35 H 1.08990 * 109.47204 * 300.00097 * 4 2 1 36 36 H 1.08997 * 109.46587 * 60.00085 * 4 2 1 37 37 H 1.09002 * 109.46857 * 179.97438 * 4 2 1 38 38 H 0.97001 * 120.00163 * 359.97438 * 8 6 5 39 39 H 1.09002 * 109.47045 * 299.99966 * 11 9 8 40 40 H 1.09001 * 109.47375 * 179.97438 * 11 9 8 41 41 H 1.08992 * 109.47056 * 300.00064 * 12 11 9 42 42 H 1.09004 * 109.47006 * 180.02562 * 12 11 9 43 43 H 1.09004 * 109.47368 * 179.97438 * 13 12 11 44 44 H 1.09001 * 109.47372 * 59.99964 * 13 12 11 45 45 H 1.09002 * 109.47398 * 180.02562 * 14 13 12 46 46 H 1.09001 * 109.47194 * 300.00476 * 14 13 12 47 47 H 1.09002 * 109.46906 * 55.00224 * 17 15 14 48 48 H 1.09006 * 109.47717 * 174.99599 * 17 15 14 49 49 H 0.96996 * 119.99210 * 0.02562 * 20 18 17 50 50 H 0.97002 * 119.99499 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0139 -0.6844 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9509 -2.5095 0.5040 8 7 2.0679 -2.6656 2.4167 9 6 1.6739 -4.0668 2.5832 10 1 0.6646 -4.2087 2.1970 11 6 2.6452 -4.9646 1.8142 12 6 4.0620 -4.7653 2.3563 13 6 4.0959 -5.1316 3.8414 14 6 3.1247 -4.2339 4.6105 15 6 1.7079 -4.4331 4.0684 16 1 1.4147 -5.4755 4.1922 17 6 0.7367 -3.5349 4.8370 18 6 0.6780 -3.9750 6.2771 19 8 1.3476 -4.9144 6.6519 20 7 -0.1177 -3.3242 7.1489 21 6 -0.1714 -3.7250 8.4589 22 1 0.4242 -4.5619 8.7924 23 6 -0.9921 -3.0543 9.3574 24 7 -1.0440 -3.4388 10.6130 25 14 -2.0228 -1.6072 8.7803 26 1 -3.3468 -2.0956 8.3181 27 1 -2.2112 -0.6545 9.9037 28 1 -1.3297 -0.9212 7.6603 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6766 1.9564 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6766 -0.2075 -2.1391 37 1 3.1300 -0.7209 -1.2494 38 1 2.6281 -2.2369 3.0826 39 1 2.6210 -4.7036 0.7562 40 1 2.3523 -6.0071 1.9384 41 1 4.3551 -3.7228 2.2324 42 1 4.7541 -5.4046 1.8081 43 1 5.1054 -4.9901 4.2276 44 1 3.8028 -6.1741 3.9653 45 1 3.1492 -4.4945 5.6686 46 1 3.4178 -3.1913 4.4867 47 1 1.0800 -2.5016 4.7866 48 1 -0.2562 -3.6099 4.3934 49 1 -0.6528 -2.5728 6.8492 50 1 -1.6172 -2.9709 11.2402 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495910731.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:34 Heat of formation + Delta-G solvation = -162.607605 kcal Electronic energy + Delta-G solvation = -29502.679392 eV Core-core repulsion = 25528.203557 eV Total energy + Delta-G solvation = -3974.475835 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.96577 -40.84344 -39.58888 -37.73189 -36.03455 -35.27833 -34.34010 -33.77340 -33.36166 -30.81910 -28.68156 -28.30247 -28.24544 -26.20592 -24.24374 -23.14573 -22.72162 -21.21689 -21.03868 -20.15193 -19.96942 -19.26020 -17.71490 -17.40780 -17.14960 -16.79042 -16.31441 -16.22909 -15.94163 -15.65217 -15.39157 -15.29087 -14.92461 -14.79158 -14.44701 -14.32266 -14.17880 -13.66228 -13.34876 -13.28845 -13.07906 -12.98052 -12.94462 -12.88698 -12.81059 -12.79880 -12.55177 -12.42054 -12.36175 -12.21698 -11.99928 -11.87772 -11.54378 -11.39077 -11.33473 -11.29712 -11.01840 -10.96191 -10.30205 -10.21365 -10.03685 -8.41584 -6.01282 1.25571 1.28928 1.33615 1.42126 1.86137 1.97608 2.21605 2.90568 3.15608 3.23275 3.69217 3.76083 3.81327 3.84357 3.86218 4.00644 4.12868 4.20112 4.31955 4.41903 4.49233 4.55190 4.61534 4.65006 4.66764 4.68359 4.79500 4.81177 4.82020 4.88330 4.90924 4.93011 5.03301 5.15708 5.17673 5.24631 5.29059 5.31131 5.34109 5.38275 5.46936 5.55544 5.57479 5.60690 5.66710 5.97541 6.48972 6.58490 6.89095 7.41164 7.43019 7.97502 8.76061 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.011598 B = 0.003559 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.730040 B = 7866.101401 C = 9743.423808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.125 3.875 3 C -0.137 4.137 4 C -0.178 4.178 5 O -0.372 6.372 6 C 0.648 3.352 7 O -0.590 6.590 8 N -0.693 5.693 9 C 0.178 3.822 10 H 0.086 0.914 11 C -0.126 4.126 12 C -0.109 4.109 13 C -0.113 4.113 14 C -0.118 4.118 15 C -0.064 4.064 16 H 0.082 0.918 17 C -0.120 4.120 18 C 0.453 3.547 19 O -0.610 6.610 20 N -0.595 5.595 21 C -0.326 4.326 22 H 0.059 0.941 23 C -0.014 4.014 24 N -0.935 5.935 25 Si 0.960 3.040 26 H -0.259 1.259 27 H -0.274 1.274 28 H -0.234 1.234 29 H 0.058 0.942 30 H 0.089 0.911 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.088 0.912 37 H 0.061 0.939 38 H 0.410 0.590 39 H 0.064 0.936 40 H 0.081 0.919 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.057 0.943 45 H 0.055 0.945 46 H 0.065 0.935 47 H 0.101 0.899 48 H 0.101 0.899 49 H 0.387 0.613 50 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.523 9.791 -25.952 28.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.089 3.911 3 C -0.194 4.194 4 C -0.235 4.235 5 O -0.287 6.287 6 C 0.402 3.598 7 O -0.481 6.481 8 N -0.353 5.353 9 C 0.075 3.925 10 H 0.104 0.896 11 C -0.164 4.164 12 C -0.146 4.146 13 C -0.151 4.151 14 C -0.156 4.156 15 C -0.084 4.084 16 H 0.100 0.900 17 C -0.160 4.160 18 C 0.242 3.758 19 O -0.496 6.496 20 N -0.236 5.236 21 C -0.455 4.455 22 H 0.077 0.923 23 C -0.213 4.213 24 N -0.575 5.575 25 Si 0.780 3.220 26 H -0.184 1.184 27 H -0.200 1.200 28 H -0.158 1.158 29 H 0.077 0.923 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.119 0.881 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.107 0.893 37 H 0.080 0.920 38 H 0.248 0.752 39 H 0.082 0.918 40 H 0.099 0.901 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.083 0.917 47 H 0.119 0.881 48 H 0.119 0.881 49 H 0.222 0.778 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.542 8.994 -25.949 28.232 hybrid contribution -0.583 0.569 0.954 1.255 sum 5.959 9.564 -24.994 27.417 Atomic orbital electron populations 1.22483 0.94152 1.03778 1.03386 1.22367 0.94453 0.92614 0.81661 1.21887 1.02407 0.90943 1.04153 1.22453 1.01559 1.02303 0.97170 1.86323 1.71617 1.23340 1.47375 1.18213 0.78604 0.80621 0.82379 1.90881 1.42200 1.71020 1.44019 1.44897 1.54897 1.12294 1.23209 1.20913 0.99219 0.78106 0.94284 0.89564 1.21896 0.95349 0.99932 0.99235 1.21451 0.96258 1.01807 0.95129 1.21488 0.99006 0.99393 0.95193 1.21636 0.93669 0.99835 1.00437 1.21043 0.95454 1.00046 0.91809 0.89955 1.21620 1.02459 1.01741 0.90222 1.20949 0.81605 0.84442 0.88840 1.90517 1.46621 1.31837 1.80588 1.42148 1.41614 1.31311 1.08515 1.19037 1.25848 1.15711 0.84896 0.92282 1.26055 0.98743 1.01631 0.94846 1.69801 1.40235 1.42993 1.04515 0.85432 0.79192 0.77887 0.79468 1.18353 1.19954 1.15788 0.92270 0.89254 0.91722 0.91215 0.88063 0.91506 0.91722 0.89309 0.91998 0.75246 0.91762 0.90088 0.91927 0.90920 0.91549 0.92464 0.92625 0.91673 0.88122 0.88112 0.77779 0.91214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.19 8.37 71.98 0.60 -2.58 16 2 C 0.13 2.17 1.13 -10.79 -0.01 2.16 16 3 C -0.14 -1.59 8.85 71.98 0.64 -0.96 16 4 C -0.18 -2.92 8.37 71.98 0.60 -2.32 16 5 O -0.37 -8.05 9.94 -55.54 -0.55 -8.60 16 6 C 0.65 15.37 8.02 129.79 1.04 16.41 16 7 O -0.59 -16.29 11.54 19.80 0.23 -16.07 16 8 N -0.69 -14.44 3.62 -570.11 -2.06 -16.50 16 9 C 0.18 3.89 2.23 44.99 0.10 3.99 16 10 H 0.09 2.03 7.58 -2.39 -0.02 2.01 16 11 C -0.13 -2.47 5.60 30.59 0.17 -2.30 16 12 C -0.11 -1.99 5.77 30.59 0.18 -1.82 16 13 C -0.11 -2.50 5.92 30.59 0.18 -2.32 16 14 C -0.12 -3.17 4.77 30.59 0.15 -3.02 16 15 C -0.06 -1.69 1.63 -10.79 -0.02 -1.71 16 16 H 0.08 2.45 7.96 -2.39 -0.02 2.43 16 17 C -0.12 -3.54 4.94 29.84 0.15 -3.39 16 18 C 0.45 19.64 7.50 87.66 0.66 20.30 16 19 O -0.61 -31.66 13.54 -3.07 -0.04 -31.70 16 20 N -0.60 -27.85 5.09 -306.98 -1.56 -29.42 16 21 C -0.33 -18.92 10.16 84.04 0.85 -18.07 16 22 H 0.06 4.06 7.39 -2.91 -0.02 4.04 16 23 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 24 N -0.93 -56.35 13.96 21.66 0.30 -56.05 16 25 Si 0.96 39.23 27.74 68.60 1.90 41.13 16 26 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 27 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 28 H -0.23 -8.18 6.52 99.48 0.65 -7.53 16 29 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 30 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.06 1.49 5.88 -2.39 -0.01 1.47 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.06 1.41 5.88 -2.39 -0.01 1.40 16 36 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.41 7.75 6.78 -92.71 -0.63 7.13 16 39 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.06 1.12 7.60 -2.39 -0.02 1.10 16 42 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 43 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.06 2.00 5.95 -2.39 -0.01 1.99 16 46 H 0.06 1.50 6.51 -2.39 -0.02 1.49 16 47 H 0.10 2.54 7.61 -2.39 -0.02 2.52 16 48 H 0.10 2.61 8.14 -2.38 -0.02 2.59 16 49 H 0.39 15.35 5.76 -92.71 -0.53 14.82 16 50 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -73.56 383.97 3.69 -69.87 By element: Atomic # 1 Polarization: 43.55 SS G_CDS: -0.28 Total: 43.27 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: 5.76 Total: 4.07 kcal Atomic # 7 Polarization: -98.65 SS G_CDS: -3.32 Total: -101.97 kcal Atomic # 8 Polarization: -56.00 SS G_CDS: -0.36 Total: -56.37 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 1.90 Total: 41.13 kcal Total: -73.56 3.69 -69.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495910731.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.740 kcal (2) G-P(sol) polarization free energy of solvation -73.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds