Wall clock time and date at job start Tue Mar 31 2020 14:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46957 * 2 1 4 4 C 1.53000 * 109.46890 * 240.00268 * 2 1 3 5 5 O 1.45203 * 109.47334 * 120.00193 * 2 1 3 6 6 C 1.34633 * 117.00141 * 59.99886 * 5 2 1 7 7 O 1.21512 * 119.99708 * 0.02562 * 6 5 2 8 8 N 1.34771 * 119.99982 * 179.97438 * 6 5 2 9 9 C 1.46500 * 119.99947 * 180.27688 * 8 6 5 10 10 C 1.53001 * 109.47510 * 179.72454 * 9 8 6 11 11 C 1.53001 * 109.47340 * 180.02562 * 10 9 8 12 12 H 1.09002 * 109.49388 * 305.06006 * 11 10 9 13 13 C 1.53041 * 109.49535 * 185.00232 * 11 10 9 14 14 C 1.53045 * 109.53712 * 178.68432 * 13 11 10 15 15 C 1.53187 * 109.31226 * 61.36011 * 14 13 11 16 16 N 1.46922 * 108.77699 * 305.36768 * 15 14 13 17 17 C 1.34778 * 120.62917 * 233.58829 * 16 15 14 18 18 O 1.21683 * 120.00303 * 174.75171 * 17 16 15 19 19 C 1.46383 * 119.99939 * 354.74597 * 17 16 15 20 20 H 1.08002 * 119.99834 * 5.02494 * 19 17 16 21 21 C 1.40049 * 119.99964 * 185.01890 * 19 17 16 22 22 N 1.30679 * 119.99894 * 5.06593 * 21 19 17 23 23 Si 1.86792 * 120.00110 * 185.05702 * 21 19 17 24 24 H 1.48502 * 109.47257 * 85.00254 * 23 21 19 25 25 H 1.48501 * 109.47251 * 205.00225 * 23 21 19 26 26 H 1.48503 * 109.47220 * 325.00375 * 23 21 19 27 27 C 1.46925 * 118.74245 * 53.60905 * 16 15 14 28 28 H 1.09002 * 109.47212 * 299.99566 * 1 2 3 29 29 H 1.08996 * 109.47408 * 59.99579 * 1 2 3 30 30 H 1.09000 * 109.46923 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47055 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47412 * 299.99865 * 3 2 1 33 33 H 1.08994 * 109.46964 * 60.00462 * 3 2 1 34 34 H 1.09000 * 109.47111 * 299.99608 * 4 2 1 35 35 H 1.08996 * 109.47422 * 60.00170 * 4 2 1 36 36 H 1.09009 * 109.46984 * 179.97438 * 4 2 1 37 37 H 0.97000 * 120.00262 * 0.02562 * 8 6 5 38 38 H 1.09001 * 109.47256 * 299.72774 * 9 8 6 39 39 H 1.09009 * 109.47487 * 59.72416 * 9 8 6 40 40 H 1.09001 * 109.47122 * 300.00402 * 10 9 8 41 41 H 1.08995 * 109.46666 * 59.99605 * 10 9 8 42 42 H 1.09005 * 109.45595 * 298.70125 * 13 11 10 43 43 H 1.09001 * 109.46219 * 58.67227 * 13 11 10 44 44 H 1.09004 * 109.49453 * 181.31445 * 14 13 11 45 45 H 1.08999 * 109.49386 * 301.37846 * 14 13 11 46 46 H 1.08997 * 109.58577 * 65.15754 * 15 14 13 47 47 H 1.09000 * 109.58550 * 185.57880 * 15 14 13 48 48 H 0.96998 * 119.99494 * 179.97438 * 22 21 19 49 49 H 1.08997 * 109.58862 * 186.60548 * 27 16 15 50 50 H 1.09006 * 109.58369 * 66.17795 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9517 -2.5097 0.5035 8 7 2.0682 -2.6657 2.4166 9 6 1.6796 -4.0687 2.5797 10 6 2.2848 -4.6186 3.8729 11 6 1.8795 -6.0841 4.0430 12 1 0.7936 -6.1685 4.0004 13 6 2.3791 -6.5986 5.3949 14 6 1.9459 -8.0548 5.5802 15 6 2.5696 -8.9134 4.4755 16 7 2.2123 -8.3388 3.1714 17 6 1.6297 -9.0984 2.2226 18 8 1.2518 -8.5905 1.1835 19 6 1.4518 -10.5347 2.4422 20 1 1.7124 -10.9717 3.3949 21 6 0.9434 -11.3422 1.4171 22 7 0.7212 -10.8334 0.2340 23 14 0.5834 -13.1463 1.7406 24 1 -0.7740 -13.2827 2.3272 25 1 0.6487 -13.9009 0.4633 26 1 1.5892 -13.6896 2.6885 27 6 2.5024 -6.9204 2.9208 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6766 -0.2074 -2.1392 36 1 3.1300 -0.7208 -1.2495 37 1 2.6278 -2.2368 3.0827 38 1 0.5931 -4.1417 2.6273 39 1 2.0458 -4.6482 1.7321 40 1 3.3713 -4.5457 3.8253 41 1 1.9187 -4.0392 4.7204 42 1 3.4669 -6.5365 5.4276 43 1 1.9564 -5.9897 6.1940 44 1 2.2819 -8.4133 6.5532 45 1 0.8594 -8.1210 5.5234 46 1 3.6538 -8.9209 4.5868 47 1 2.1862 -9.9314 4.5436 48 1 0.3694 -11.3928 -0.4761 49 1 2.0747 -6.6235 1.9633 50 1 3.5813 -6.7654 2.9053 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495913711.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:41 Heat of formation + Delta-G solvation = -136.914022 kcal Electronic energy + Delta-G solvation = -28489.509991 eV Core-core repulsion = 24516.148314 eV Total energy + Delta-G solvation = -3973.361677 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.78304 -38.91811 -37.58661 -36.21692 -35.05021 -34.16009 -32.65639 -32.54122 -31.03780 -28.34881 -27.61173 -27.52324 -26.42233 -24.15164 -23.98905 -22.13858 -21.11033 -20.41442 -19.85124 -18.89640 -18.16049 -16.72030 -16.43523 -16.32432 -15.73425 -15.28052 -15.20904 -14.65534 -14.51640 -14.41686 -13.97254 -13.71808 -13.59850 -13.57229 -13.18387 -12.81424 -12.70553 -12.43924 -12.31599 -12.09049 -12.06486 -12.00922 -11.74843 -11.64558 -11.45570 -11.42322 -11.31294 -10.97799 -10.96157 -10.64211 -10.58830 -10.47955 -10.39014 -10.22313 -10.06964 -9.91392 -9.75643 -9.14110 -8.82938 -7.54996 -7.18315 -6.19132 -4.62305 2.12228 2.85602 3.15065 3.21496 3.23855 4.06451 4.10311 4.53629 4.55266 4.57390 4.58941 4.72330 4.76706 4.97769 5.13185 5.25504 5.30508 5.34235 5.36024 5.45711 5.49461 5.56184 5.57599 5.63647 5.69446 5.76510 5.78079 5.82099 5.89932 6.00363 6.02874 6.06957 6.14162 6.16137 6.18486 6.24380 6.35847 6.44169 6.47719 6.55173 6.56482 6.63395 6.83246 7.39903 7.47394 7.66010 8.16181 8.37942 8.38665 9.03929 9.46317 10.59806 10.78410 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.016085 B = 0.002523 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.382856 B =11097.299817 C =12518.441498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.140 4.140 4 C -0.185 4.185 5 O -0.369 6.369 6 C 0.645 3.355 7 O -0.561 6.561 8 N -0.710 5.710 9 C 0.132 3.868 10 C -0.120 4.120 11 C -0.099 4.099 12 H 0.075 0.925 13 C -0.106 4.106 14 C -0.136 4.136 15 C 0.121 3.879 16 N -0.642 5.642 17 C 0.560 3.440 18 O -0.577 6.577 19 C -0.546 4.546 20 H 0.073 0.927 21 C 0.088 3.912 22 N -0.768 5.768 23 Si 0.906 3.094 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.265 1.265 27 C 0.123 3.877 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.403 0.597 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.058 0.942 43 H 0.054 0.946 44 H 0.061 0.939 45 H 0.063 0.937 46 H 0.040 0.960 47 H 0.091 0.909 48 H 0.269 0.731 49 H 0.085 0.915 50 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.179 19.521 7.091 21.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.242 4.242 5 O -0.284 6.284 6 C 0.398 3.602 7 O -0.450 6.450 8 N -0.369 5.369 9 C 0.010 3.990 10 C -0.159 4.159 11 C -0.119 4.119 12 H 0.094 0.906 13 C -0.144 4.144 14 C -0.174 4.174 15 C -0.003 4.003 16 N -0.380 5.380 17 C 0.365 3.635 18 O -0.460 6.460 19 C -0.582 4.582 20 H 0.091 0.909 21 C -0.132 4.132 22 N -0.396 5.396 23 Si 0.730 3.270 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.190 1.190 27 C -0.001 4.001 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.109 0.891 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.237 0.763 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.058 0.942 47 H 0.110 0.890 48 H 0.079 0.921 49 H 0.104 0.896 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 3.537 19.542 5.808 20.691 hybrid contribution 0.091 -0.662 0.541 0.859 sum 3.628 18.880 6.349 20.247 Atomic orbital electron populations 1.22521 0.94019 1.05273 1.02308 1.22044 0.94372 0.91394 0.82246 1.21851 1.02183 0.92647 1.02993 1.22529 1.01532 1.03804 0.96347 1.86273 1.71760 1.23908 1.46470 1.18126 0.79208 0.80412 0.82467 1.90951 1.40788 1.70249 1.42997 1.44817 1.55682 1.12924 1.23508 1.21549 1.00556 0.77820 0.99102 1.21796 1.01208 0.96635 0.96221 1.21499 1.01450 0.92436 0.96517 0.90622 1.21487 1.00452 0.96422 0.96039 1.21960 1.01475 0.95323 0.98676 1.21410 0.97477 0.98215 0.83227 1.48168 1.66353 1.08393 1.15109 1.18248 0.76595 0.87097 0.81521 1.90597 1.53732 1.74166 1.27492 1.20971 1.45908 0.91240 1.00107 0.90935 1.25726 0.93306 0.99795 0.94360 1.70005 1.31887 1.36193 1.01532 0.86423 0.79454 0.82719 0.78375 1.19643 1.20532 1.18972 1.21232 0.97512 0.83252 0.98091 0.92297 0.91187 0.89202 0.91529 0.90197 0.91589 0.89120 0.91193 0.92195 0.76287 0.90966 0.90215 0.91125 0.91322 0.92278 0.92679 0.91991 0.91780 0.94154 0.89039 0.92057 0.89646 0.94136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.93 8.37 37.16 0.31 -1.62 16 2 C 0.14 1.43 1.13 -90.62 -0.10 1.33 16 3 C -0.14 -1.03 8.85 37.16 0.33 -0.70 16 4 C -0.18 -2.02 8.37 37.16 0.31 -1.70 16 5 O -0.37 -4.53 9.94 -40.30 -0.40 -4.93 16 6 C 0.65 9.12 8.06 54.05 0.44 9.56 16 7 O -0.56 -9.71 11.88 -19.28 -0.23 -9.94 16 8 N -0.71 -8.39 5.56 -65.28 -0.36 -8.75 16 9 C 0.13 1.74 5.44 -4.04 -0.02 1.72 16 10 C -0.12 -1.33 4.80 -26.73 -0.13 -1.46 16 11 C -0.10 -1.44 2.34 -90.50 -0.21 -1.65 16 12 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 13 C -0.11 -1.36 5.17 -26.69 -0.14 -1.50 16 14 C -0.14 -1.98 6.08 -26.61 -0.16 -2.14 16 15 C 0.12 2.21 6.31 -3.72 -0.02 2.18 16 16 N -0.64 -14.46 2.97 -174.44 -0.52 -14.98 16 17 C 0.56 15.95 7.61 -12.98 -0.10 15.85 16 18 O -0.58 -18.80 14.49 5.20 0.08 -18.72 16 19 C -0.55 -15.28 8.85 -35.63 -0.32 -15.59 16 20 H 0.07 1.84 5.69 -52.49 -0.30 1.54 16 21 C 0.09 2.46 5.49 -17.36 -0.10 2.36 16 22 N -0.77 -23.17 11.87 55.55 0.66 -22.51 16 23 Si 0.91 20.12 29.56 -169.99 -5.03 15.09 16 24 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 25 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 27 C 0.12 2.35 5.34 -3.71 -0.02 2.33 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.09 1.21 5.88 -51.93 -0.31 0.90 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.09 1.27 5.88 -51.93 -0.31 0.96 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.62 8.14 -51.92 -0.42 0.19 16 37 H 0.40 3.56 8.58 -40.82 -0.35 3.21 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.08 1.26 6.70 -51.92 -0.35 0.91 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 47 H 0.09 1.77 5.37 -51.93 -0.28 1.49 16 48 H 0.27 7.38 8.29 -40.82 -0.34 7.04 16 49 H 0.09 1.88 5.72 -51.93 -0.30 1.58 16 50 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 390.33 15.07 5.88 5.88 Total: -1.00 -35.69 390.33 -8.35 -44.04 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -8.50 Total: 5.84 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: 0.07 Total: 8.97 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: -0.22 Total: -46.24 kcal Atomic # 8 Polarization: -33.04 SS G_CDS: -0.55 Total: -33.59 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.03 Total: 15.09 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.69 -8.35 -44.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495913711.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.874 kcal (2) G-P(sol) polarization free energy of solvation -35.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds