Wall clock time and date at job start Tue Mar 31 2020 14:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46957 * 2 1 4 4 C 1.53000 * 109.46890 * 240.00268 * 2 1 3 5 5 O 1.45203 * 109.47334 * 120.00193 * 2 1 3 6 6 C 1.34633 * 117.00141 * 59.99886 * 5 2 1 7 7 O 1.21512 * 119.99708 * 0.02562 * 6 5 2 8 8 N 1.34771 * 119.99982 * 179.97438 * 6 5 2 9 9 C 1.46500 * 119.99947 * 180.27688 * 8 6 5 10 10 C 1.53001 * 109.47510 * 179.72454 * 9 8 6 11 11 C 1.53001 * 109.47340 * 180.02562 * 10 9 8 12 12 H 1.09002 * 109.49388 * 305.06006 * 11 10 9 13 13 C 1.53041 * 109.49535 * 185.00232 * 11 10 9 14 14 C 1.53045 * 109.53712 * 178.68432 * 13 11 10 15 15 C 1.53187 * 109.31226 * 61.36011 * 14 13 11 16 16 N 1.46922 * 108.77699 * 305.36768 * 15 14 13 17 17 C 1.34778 * 120.62917 * 233.58829 * 16 15 14 18 18 O 1.21683 * 120.00303 * 174.75171 * 17 16 15 19 19 C 1.46383 * 119.99939 * 354.74597 * 17 16 15 20 20 H 1.08002 * 119.99834 * 5.02494 * 19 17 16 21 21 C 1.40049 * 119.99964 * 185.01890 * 19 17 16 22 22 N 1.30679 * 119.99894 * 5.06593 * 21 19 17 23 23 Si 1.86792 * 120.00110 * 185.05702 * 21 19 17 24 24 H 1.48502 * 109.47257 * 85.00254 * 23 21 19 25 25 H 1.48501 * 109.47251 * 205.00225 * 23 21 19 26 26 H 1.48503 * 109.47220 * 325.00375 * 23 21 19 27 27 C 1.46925 * 118.74245 * 53.60905 * 16 15 14 28 28 H 1.09002 * 109.47212 * 299.99566 * 1 2 3 29 29 H 1.08996 * 109.47408 * 59.99579 * 1 2 3 30 30 H 1.09000 * 109.46923 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47055 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47412 * 299.99865 * 3 2 1 33 33 H 1.08994 * 109.46964 * 60.00462 * 3 2 1 34 34 H 1.09000 * 109.47111 * 299.99608 * 4 2 1 35 35 H 1.08996 * 109.47422 * 60.00170 * 4 2 1 36 36 H 1.09009 * 109.46984 * 179.97438 * 4 2 1 37 37 H 0.97000 * 120.00262 * 0.02562 * 8 6 5 38 38 H 1.09001 * 109.47256 * 299.72774 * 9 8 6 39 39 H 1.09009 * 109.47487 * 59.72416 * 9 8 6 40 40 H 1.09001 * 109.47122 * 300.00402 * 10 9 8 41 41 H 1.08995 * 109.46666 * 59.99605 * 10 9 8 42 42 H 1.09005 * 109.45595 * 298.70125 * 13 11 10 43 43 H 1.09001 * 109.46219 * 58.67227 * 13 11 10 44 44 H 1.09004 * 109.49453 * 181.31445 * 14 13 11 45 45 H 1.08999 * 109.49386 * 301.37846 * 14 13 11 46 46 H 1.08997 * 109.58577 * 65.15754 * 15 14 13 47 47 H 1.09000 * 109.58550 * 185.57880 * 15 14 13 48 48 H 0.96998 * 119.99494 * 179.97438 * 22 21 19 49 49 H 1.08997 * 109.58862 * 186.60548 * 27 16 15 50 50 H 1.09006 * 109.58369 * 66.17795 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9517 -2.5097 0.5035 8 7 2.0682 -2.6657 2.4166 9 6 1.6796 -4.0687 2.5797 10 6 2.2848 -4.6186 3.8729 11 6 1.8795 -6.0841 4.0430 12 1 0.7936 -6.1685 4.0004 13 6 2.3791 -6.5986 5.3949 14 6 1.9459 -8.0548 5.5802 15 6 2.5696 -8.9134 4.4755 16 7 2.2123 -8.3388 3.1714 17 6 1.6297 -9.0984 2.2226 18 8 1.2518 -8.5905 1.1835 19 6 1.4518 -10.5347 2.4422 20 1 1.7124 -10.9717 3.3949 21 6 0.9434 -11.3422 1.4171 22 7 0.7212 -10.8334 0.2340 23 14 0.5834 -13.1463 1.7406 24 1 -0.7740 -13.2827 2.3272 25 1 0.6487 -13.9009 0.4633 26 1 1.5892 -13.6896 2.6885 27 6 2.5024 -6.9204 2.9208 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6766 -0.2074 -2.1392 36 1 3.1300 -0.7208 -1.2495 37 1 2.6278 -2.2368 3.0827 38 1 0.5931 -4.1417 2.6273 39 1 2.0458 -4.6482 1.7321 40 1 3.3713 -4.5457 3.8253 41 1 1.9187 -4.0392 4.7204 42 1 3.4669 -6.5365 5.4276 43 1 1.9564 -5.9897 6.1940 44 1 2.2819 -8.4133 6.5532 45 1 0.8594 -8.1210 5.5234 46 1 3.6538 -8.9209 4.5868 47 1 2.1862 -9.9314 4.5436 48 1 0.3694 -11.3928 -0.4761 49 1 2.0747 -6.6235 1.9633 50 1 3.5813 -6.7654 2.9053 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495913711.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:40 Heat of formation + Delta-G solvation = -162.716873 kcal Electronic energy + Delta-G solvation = -28490.628887 eV Core-core repulsion = 24516.148314 eV Total energy + Delta-G solvation = -3974.480573 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.83172 -40.45518 -38.73539 -37.90389 -36.36461 -35.12826 -34.68578 -34.00479 -32.49920 -29.74608 -28.39214 -28.32281 -28.27995 -25.80150 -25.19079 -23.24618 -22.29189 -21.90410 -20.99210 -20.45580 -19.20456 -18.34394 -17.80603 -17.62538 -17.41053 -16.49599 -16.41884 -16.09087 -15.66216 -15.64704 -15.41098 -15.15869 -14.83395 -14.67582 -14.44644 -14.19905 -14.03979 -13.48852 -13.41670 -13.33008 -13.20745 -13.06835 -12.93649 -12.87668 -12.78247 -12.74855 -12.53923 -12.44999 -12.35617 -12.18863 -11.98345 -11.84505 -11.59673 -11.41588 -11.36449 -11.22202 -11.10554 -10.92422 -10.25997 -9.75995 -9.02400 -8.30215 -6.83017 1.12811 1.38201 1.40849 1.54887 1.72970 2.23372 2.46431 2.89782 3.14237 3.58739 3.69611 3.74258 3.78121 3.90673 3.93424 3.99737 4.20865 4.23925 4.34660 4.42530 4.48903 4.51881 4.58997 4.62878 4.74312 4.75975 4.76552 4.82156 4.87476 4.91882 4.96810 4.99832 5.04588 5.09096 5.13053 5.19410 5.23089 5.26384 5.30411 5.33299 5.35399 5.42385 5.56657 5.59620 5.81932 6.17069 6.40299 6.45877 6.87993 7.34015 7.45841 8.48723 8.68196 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.016085 B = 0.002523 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.382856 B =11097.299817 C =12518.441498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.124 3.876 3 C -0.132 4.132 4 C -0.183 4.183 5 O -0.364 6.364 6 C 0.639 3.361 7 O -0.600 6.600 8 N -0.694 5.694 9 C 0.138 3.862 10 C -0.103 4.103 11 C -0.090 4.090 12 H 0.050 0.950 13 C -0.099 4.099 14 C -0.129 4.129 15 C 0.113 3.887 16 N -0.647 5.647 17 C 0.539 3.461 18 O -0.637 6.637 19 C -0.570 4.570 20 H 0.095 0.905 21 C 0.026 3.974 22 N -0.826 5.826 23 Si 0.996 3.004 24 H -0.262 1.262 25 H -0.275 1.275 26 H -0.244 1.244 27 C 0.120 3.880 28 H 0.066 0.934 29 H 0.091 0.909 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.102 0.898 33 H 0.073 0.927 34 H 0.052 0.948 35 H 0.091 0.909 36 H 0.063 0.937 37 H 0.421 0.579 38 H 0.052 0.948 39 H 0.043 0.957 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.099 0.901 45 H 0.045 0.955 46 H 0.061 0.939 47 H 0.075 0.925 48 H 0.273 0.727 49 H 0.040 0.960 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.621 20.571 10.490 23.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.088 3.912 3 C -0.189 4.189 4 C -0.240 4.240 5 O -0.278 6.278 6 C 0.393 3.607 7 O -0.491 6.491 8 N -0.354 5.354 9 C 0.015 3.985 10 C -0.141 4.141 11 C -0.110 4.110 12 H 0.068 0.932 13 C -0.137 4.137 14 C -0.168 4.168 15 C -0.010 4.010 16 N -0.383 5.383 17 C 0.345 3.655 18 O -0.524 6.524 19 C -0.606 4.606 20 H 0.113 0.887 21 C -0.188 4.188 22 N -0.456 5.456 23 Si 0.815 3.185 24 H -0.187 1.187 25 H -0.200 1.200 26 H -0.167 1.167 27 C -0.003 4.003 28 H 0.085 0.915 29 H 0.109 0.891 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.120 0.880 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.110 0.890 36 H 0.082 0.918 37 H 0.259 0.741 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.112 0.888 41 H 0.124 0.876 42 H 0.098 0.902 43 H 0.108 0.892 44 H 0.117 0.883 45 H 0.063 0.937 46 H 0.080 0.920 47 H 0.093 0.907 48 H 0.083 0.917 49 H 0.059 0.941 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.037 20.643 9.303 23.196 hybrid contribution -0.322 -0.909 -0.551 1.110 sum 4.715 19.734 8.752 22.097 Atomic orbital electron populations 1.22478 0.94210 1.03327 1.03788 1.22431 0.94497 0.92967 0.81332 1.21868 1.02518 0.90020 1.04506 1.22495 1.01733 1.01937 0.97842 1.86292 1.71538 1.22668 1.47351 1.18396 0.78874 0.81016 0.82461 1.90951 1.42513 1.71184 1.44481 1.44620 1.55344 1.12157 1.23324 1.21349 0.99462 0.78346 0.99364 1.21699 1.02420 0.94227 0.95750 1.21388 0.99602 0.93908 0.96145 0.93184 1.21494 1.01805 0.95303 0.95070 1.21918 1.00081 0.96112 0.98655 1.21674 0.98978 0.98150 0.82192 1.48062 1.64936 1.09546 1.15735 1.18696 0.76771 0.88254 0.81807 1.90545 1.56306 1.75384 1.30209 1.21522 1.46203 0.91575 1.01339 0.88683 1.27045 0.92241 1.05957 0.93598 1.70202 1.33367 1.38878 1.03139 0.85059 0.79874 0.74826 0.78711 1.18667 1.20006 1.16749 1.21390 0.98550 0.82196 0.98195 0.91454 0.89057 0.92771 0.90997 0.87991 0.90760 0.92898 0.89008 0.91767 0.74090 0.92987 0.93868 0.88847 0.87645 0.90234 0.89205 0.88258 0.93656 0.92032 0.90673 0.91726 0.94113 0.92345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.79 8.37 71.98 0.60 -3.18 16 2 C 0.12 2.54 1.13 -10.79 -0.01 2.52 16 3 C -0.13 -1.63 8.85 71.98 0.64 -0.99 16 4 C -0.18 -4.05 8.37 71.98 0.60 -3.45 16 5 O -0.36 -8.82 9.94 -55.42 -0.55 -9.38 16 6 C 0.64 18.74 8.06 129.79 1.05 19.79 16 7 O -0.60 -22.51 11.88 19.80 0.24 -22.28 16 8 N -0.69 -16.29 5.56 -590.85 -3.29 -19.58 16 9 C 0.14 3.79 5.44 86.38 0.47 4.26 16 10 C -0.10 -2.06 4.80 30.60 0.15 -1.92 16 11 C -0.09 -2.54 2.34 -10.72 -0.03 -2.56 16 12 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 13 C -0.10 -2.14 5.17 30.62 0.16 -1.98 16 14 C -0.13 -3.39 6.08 30.67 0.19 -3.21 16 15 C 0.11 3.99 6.31 86.36 0.55 4.54 16 16 N -0.65 -30.05 2.97 -824.02 -2.45 -32.50 16 17 C 0.54 32.48 7.61 86.36 0.66 33.14 16 18 O -0.64 -44.80 14.49 -4.30 -0.06 -44.86 16 19 C -0.57 -32.94 8.85 24.83 0.22 -32.72 16 20 H 0.10 4.86 5.69 -2.91 -0.02 4.85 16 21 C 0.03 1.50 5.49 85.30 0.47 1.97 16 22 N -0.83 -52.49 11.87 21.84 0.26 -52.23 16 23 Si 1.00 41.83 29.56 68.60 2.03 43.86 16 24 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 25 H -0.28 -11.21 7.11 99.48 0.71 -10.51 16 26 H -0.24 -9.34 7.11 99.48 0.71 -8.64 16 27 C 0.12 4.74 5.34 86.36 0.46 5.20 16 28 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.05 1.55 5.88 -2.39 -0.01 1.54 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.05 1.60 5.88 -2.39 -0.01 1.59 16 35 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 37 H 0.42 6.61 8.58 -92.71 -0.80 5.81 16 38 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.04 1.51 6.70 -2.38 -0.02 1.50 16 40 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 43 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.10 1.93 8.14 -2.38 -0.02 1.91 16 45 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 47 H 0.07 2.87 5.37 -2.39 -0.01 2.86 16 48 H 0.27 15.76 8.29 -92.71 -0.77 14.99 16 49 H 0.04 1.96 5.72 -2.39 -0.01 1.95 16 50 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 Total: -1.00 -87.70 390.33 2.48 -85.22 By element: Atomic # 1 Polarization: 30.19 SS G_CDS: 0.14 Total: 30.33 kcal Atomic # 6 Polarization: 15.24 SS G_CDS: 6.16 Total: 21.41 kcal Atomic # 7 Polarization: -98.83 SS G_CDS: -5.47 Total: -104.31 kcal Atomic # 8 Polarization: -76.13 SS G_CDS: -0.38 Total: -76.51 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -87.70 2.48 -85.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495913711.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.494 kcal (2) G-P(sol) polarization free energy of solvation -87.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds