Wall clock time and date at job start Tue Mar 31 2020 15:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47060 * 2 1 4 4 C 1.52998 * 109.46970 * 240.00319 * 2 1 3 5 5 O 1.45203 * 109.47301 * 120.00314 * 2 1 3 6 6 C 1.34635 * 117.00009 * 59.99940 * 5 2 1 7 7 O 1.21517 * 119.99999 * 359.97438 * 6 5 2 8 8 N 1.34770 * 119.99919 * 180.02562 * 6 5 2 9 9 C 1.46509 * 120.00092 * 179.97438 * 8 6 5 10 10 H 1.09003 * 109.46564 * 35.00007 * 9 8 6 11 11 C 1.50698 * 109.47002 * 154.99579 * 9 8 6 12 12 O 1.21283 * 120.00472 * 0.02562 * 11 9 8 13 13 N 1.34777 * 119.99538 * 179.97438 * 11 9 8 14 14 C 1.46499 * 119.99665 * 179.72653 * 13 11 9 15 15 C 1.53004 * 109.47198 * 180.27868 * 14 13 11 16 16 C 1.50700 * 109.47208 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99770 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99720 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00513 * 0.02562 * 18 16 15 20 20 Si 1.86809 * 119.99651 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47265 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.46830 * 120.00397 * 20 18 16 23 23 H 1.48503 * 109.47108 * 240.00004 * 20 18 16 24 24 C 1.52995 * 109.47156 * 274.99977 * 9 8 6 25 25 C 1.53775 * 113.61466 * 159.13343 * 24 9 8 26 26 C 1.53953 * 87.02037 * 220.04835 * 25 24 9 27 27 C 1.53778 * 87.11187 * 25.36394 * 26 25 24 28 28 H 1.09000 * 109.46700 * 299.99610 * 1 2 3 29 29 H 1.08993 * 109.47081 * 59.99524 * 1 2 3 30 30 H 1.09001 * 109.46725 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46874 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.47097 * 300.00365 * 3 2 1 33 33 H 1.08998 * 109.46690 * 60.00218 * 3 2 1 34 34 H 1.09001 * 109.47117 * 300.00162 * 4 2 1 35 35 H 1.08996 * 109.47174 * 59.99643 * 4 2 1 36 36 H 1.08997 * 109.47416 * 180.02562 * 4 2 1 37 37 H 0.96996 * 120.00354 * 359.97438 * 8 6 5 38 38 H 0.97001 * 120.00485 * 0.02562 * 13 11 9 39 39 H 1.09009 * 109.47454 * 300.27637 * 14 13 11 40 40 H 1.08998 * 109.47492 * 60.27932 * 14 13 11 41 41 H 1.08995 * 109.46638 * 300.00121 * 15 14 13 42 42 H 1.09006 * 109.47139 * 60.00254 * 15 14 13 43 43 H 0.96999 * 120.00239 * 180.02562 * 19 18 16 44 44 H 1.08995 * 112.84863 * 290.33244 * 24 9 8 45 45 H 1.09004 * 113.61869 * 334.56793 * 25 24 9 46 46 H 1.09000 * 113.61456 * 105.46868 * 25 24 9 47 47 H 1.09005 * 113.53408 * 270.80947 * 26 25 24 48 48 H 1.09000 * 113.74326 * 139.94446 * 26 25 24 49 49 H 1.08994 * 113.61185 * 220.08937 * 27 26 25 50 50 H 1.08996 * 113.61199 * 89.18693 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6846 1.1855 6 6 1.6524 -1.9724 1.3382 7 8 0.9509 -2.5095 0.5039 8 7 2.0674 -2.6655 2.4170 9 6 1.6733 -4.0667 2.5835 10 1 1.6268 -4.5494 1.6073 11 6 2.6863 -4.7743 3.4461 12 8 3.6431 -4.1679 3.8795 13 7 2.5286 -6.0809 3.7367 14 6 3.5166 -6.7703 4.5702 15 6 3.1076 -8.2349 4.7400 16 6 4.1236 -8.9439 5.5980 17 1 4.9760 -8.4040 5.9833 18 6 3.9649 -10.2818 5.8911 19 7 2.9273 -10.9393 5.4215 20 14 5.2247 -11.1608 6.9541 21 1 6.2893 -10.2053 7.3525 22 1 4.5599 -11.6956 8.1694 23 1 5.8260 -12.2803 6.1856 24 6 0.2986 -4.1339 3.2517 25 6 -0.4319 -5.4679 3.0250 26 6 -1.7196 -4.6415 2.8547 27 6 -0.8188 -3.4698 2.4301 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9562 0.8900 34 1 1.6767 -1.7488 -1.2493 35 1 1.6766 -0.2074 -2.1392 36 1 3.1300 -0.7216 -1.2491 37 1 2.6270 -2.2367 3.0832 38 1 1.7633 -6.5659 3.3903 39 1 4.4947 -6.7193 4.0918 40 1 3.5650 -6.2910 5.5480 41 1 2.1296 -8.2858 5.2184 42 1 3.0593 -8.7143 3.7622 43 1 2.8155 -11.8805 5.6280 44 1 0.3194 -3.8192 4.2951 45 1 -0.1227 -5.9865 2.1175 46 1 -0.4404 -6.1156 3.9017 47 1 -2.2516 -4.4668 3.7899 48 1 -2.3707 -5.0025 2.0585 49 1 -1.1393 -2.5066 2.8272 50 1 -0.6155 -3.4410 1.3596 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496158971.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:42 Heat of formation + Delta-G solvation = -115.938753 kcal Electronic energy + Delta-G solvation = -28918.234598 eV Core-core repulsion = 24945.782476 eV Total energy + Delta-G solvation = -3972.452121 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.16932 -39.97397 -38.31804 -37.18949 -35.16211 -34.58005 -33.87320 -32.91166 -30.24545 -28.49045 -27.66611 -27.61138 -25.66121 -24.87304 -23.99719 -22.33449 -21.04820 -20.35701 -20.06638 -19.58451 -18.47530 -16.97882 -16.72563 -16.44618 -16.33699 -15.88612 -15.45164 -15.31555 -14.78098 -14.60227 -14.53914 -14.28865 -14.01884 -13.62951 -13.21283 -13.01575 -12.77658 -12.61544 -12.44849 -12.33528 -12.20017 -12.13531 -12.07836 -11.95377 -11.61428 -11.51519 -11.24448 -11.10122 -11.05636 -10.67099 -10.61520 -10.51044 -10.40178 -10.38750 -10.09451 -9.84075 -9.57848 -9.31432 -9.05639 -8.63381 -8.41879 -6.12449 -4.15431 1.94967 2.67843 2.81167 3.26416 3.34088 3.38355 3.52004 3.95232 4.38327 4.46295 4.49989 4.51148 4.61841 4.63902 4.65804 4.84252 4.99868 5.03906 5.20350 5.24821 5.28251 5.30668 5.38826 5.43067 5.52369 5.61457 5.66975 5.71735 5.71778 5.79188 5.89108 5.95742 6.00194 6.05431 6.13723 6.18682 6.27208 6.27777 6.38196 6.53259 6.66354 6.78247 7.35298 7.46529 7.56620 7.83174 7.86887 8.22082 8.29049 8.45505 8.90545 9.49721 10.99066 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.021484 B = 0.002446 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.976600 B =11446.553801 C =12297.216056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.137 3.863 3 C -0.141 4.141 4 C -0.184 4.184 5 O -0.363 6.363 6 C 0.657 3.343 7 O -0.567 6.567 8 N -0.690 5.690 9 C 0.155 3.845 10 H 0.116 0.884 11 C 0.504 3.496 12 O -0.546 6.546 13 N -0.711 5.711 14 C 0.121 3.879 15 C 0.012 3.988 16 C -0.521 4.521 17 H 0.060 0.940 18 C 0.059 3.941 19 N -0.893 5.893 20 Si 0.896 3.104 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.123 4.123 25 C -0.139 4.139 26 C -0.139 4.139 27 C -0.136 4.136 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.414 0.586 38 H 0.400 0.600 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.023 0.977 42 H 0.023 0.977 43 H 0.262 0.738 44 H 0.095 0.905 45 H 0.088 0.912 46 H 0.078 0.922 47 H 0.077 0.923 48 H 0.068 0.932 49 H 0.057 0.943 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.821 21.331 -11.350 25.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.100 3.900 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.278 6.278 6 C 0.411 3.589 7 O -0.457 6.457 8 N -0.349 5.349 9 C 0.047 3.953 10 H 0.134 0.866 11 C 0.288 3.712 12 O -0.424 6.424 13 N -0.362 5.362 14 C -0.001 4.001 15 C -0.025 4.025 16 C -0.560 4.560 17 H 0.078 0.922 18 C -0.143 4.143 19 N -0.532 5.532 20 Si 0.724 3.276 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.142 4.142 25 C -0.177 4.177 26 C -0.176 4.176 27 C -0.174 4.174 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.109 0.891 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.252 0.748 38 H 0.235 0.765 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.042 0.958 42 H 0.041 0.959 43 H 0.071 0.929 44 H 0.114 0.886 45 H 0.106 0.894 46 H 0.097 0.903 47 H 0.095 0.905 48 H 0.087 0.913 49 H 0.076 0.924 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -8.530 21.383 -11.481 25.725 hybrid contribution 0.546 -0.636 0.745 1.122 sum -7.984 20.746 -10.735 24.686 Atomic orbital electron populations 1.22518 0.93946 1.05193 1.02335 1.22059 0.94369 0.91456 0.82134 1.21863 1.02337 0.92617 1.03026 1.22521 1.01638 1.03595 0.96352 1.86317 1.71544 1.23546 1.46380 1.17871 0.78673 0.80502 0.81887 1.90816 1.41146 1.70247 1.43494 1.44298 1.55199 1.11349 1.24059 1.20868 0.92984 0.80728 1.00711 0.86649 1.20377 0.86291 0.83134 0.81423 1.90685 1.31894 1.66066 1.53796 1.46311 1.28385 1.09361 1.52101 1.21800 0.90410 0.95036 0.92895 1.19335 0.97693 0.87670 0.97825 1.21069 1.08707 0.94796 1.31449 0.92192 1.24995 0.95692 0.97535 0.96058 1.69959 1.28539 1.09616 1.45065 0.86463 0.81405 0.79614 0.80120 1.19597 1.20928 1.20919 1.22988 0.91722 0.99116 1.00422 1.23028 0.96262 0.95501 1.02863 1.22788 0.96251 0.97119 1.01482 1.23199 0.94839 0.97050 1.02271 0.92256 0.91285 0.89144 0.91447 0.90201 0.91494 0.89206 0.91248 0.92180 0.74824 0.76503 0.92355 0.92308 0.95832 0.95871 0.92862 0.88629 0.89395 0.90326 0.90456 0.91295 0.92396 0.87150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.57 8.37 37.16 0.31 -1.26 16 2 C 0.14 1.26 1.13 -90.62 -0.10 1.16 16 3 C -0.14 -0.97 8.85 37.16 0.33 -0.64 16 4 C -0.18 -1.68 8.37 37.16 0.31 -1.37 16 5 O -0.36 -4.25 9.94 -40.31 -0.40 -4.65 16 6 C 0.66 8.29 7.39 54.05 0.40 8.69 16 7 O -0.57 -7.48 8.69 -19.29 -0.17 -7.65 16 8 N -0.69 -8.72 4.93 -59.86 -0.29 -9.01 16 9 C 0.15 1.98 2.37 -69.08 -0.16 1.81 16 10 H 0.12 1.46 7.41 -51.93 -0.38 1.08 16 11 C 0.50 8.07 7.22 -10.99 -0.08 7.99 16 12 O -0.55 -10.45 15.84 5.55 0.09 -10.37 16 13 N -0.71 -11.77 5.43 -60.29 -0.33 -12.10 16 14 C 0.12 2.46 5.61 -4.04 -0.02 2.44 16 15 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 16 C -0.52 -14.18 9.11 -34.44 -0.31 -14.49 16 17 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -25.68 13.29 55.43 0.74 -24.94 16 20 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 21 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 24 C -0.12 -1.38 3.26 -89.81 -0.29 -1.67 16 25 C -0.14 -1.44 5.93 -25.83 -0.15 -1.60 16 26 C -0.14 -1.34 8.09 -25.83 -0.21 -1.55 16 27 C -0.14 -1.44 6.50 -25.92 -0.17 -1.61 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.09 0.95 5.88 -51.93 -0.31 0.65 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.09 1.01 5.88 -51.93 -0.31 0.70 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.41 5.29 7.90 -40.82 -0.32 4.97 16 38 H 0.40 5.84 6.68 -40.82 -0.27 5.56 16 39 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 44 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.09 0.87 7.99 -51.93 -0.41 0.46 16 46 H 0.08 0.85 8.09 -51.93 -0.42 0.43 16 47 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 48 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.11 1.31 5.52 -51.93 -0.29 1.02 16 LS Contribution 395.26 15.07 5.96 5.96 Total: -1.00 -30.46 395.26 -8.42 -38.88 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -8.60 Total: 8.18 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -0.39 Total: -0.40 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: 0.11 Total: -46.05 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.48 Total: -22.67 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.46 -8.42 -38.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496158971.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.062 kcal (2) G-P(sol) polarization free energy of solvation -30.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds