Wall clock time and date at job start Tue Mar 31 2020 15:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47060 * 2 1 4 4 C 1.52998 * 109.46970 * 240.00319 * 2 1 3 5 5 O 1.45203 * 109.47301 * 120.00314 * 2 1 3 6 6 C 1.34635 * 117.00009 * 59.99940 * 5 2 1 7 7 O 1.21517 * 119.99999 * 359.97438 * 6 5 2 8 8 N 1.34770 * 119.99919 * 180.02562 * 6 5 2 9 9 C 1.46509 * 120.00092 * 179.97438 * 8 6 5 10 10 H 1.09003 * 109.46564 * 35.00007 * 9 8 6 11 11 C 1.50698 * 109.47002 * 154.99579 * 9 8 6 12 12 O 1.21283 * 120.00472 * 0.02562 * 11 9 8 13 13 N 1.34777 * 119.99538 * 179.97438 * 11 9 8 14 14 C 1.46499 * 119.99665 * 179.72653 * 13 11 9 15 15 C 1.53004 * 109.47198 * 180.27868 * 14 13 11 16 16 C 1.50700 * 109.47208 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99770 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99720 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00513 * 0.02562 * 18 16 15 20 20 Si 1.86809 * 119.99651 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47265 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.46830 * 120.00397 * 20 18 16 23 23 H 1.48503 * 109.47108 * 240.00004 * 20 18 16 24 24 C 1.52995 * 109.47156 * 274.99977 * 9 8 6 25 25 C 1.53775 * 113.61466 * 159.13343 * 24 9 8 26 26 C 1.53953 * 87.02037 * 220.04835 * 25 24 9 27 27 C 1.53778 * 87.11187 * 25.36394 * 26 25 24 28 28 H 1.09000 * 109.46700 * 299.99610 * 1 2 3 29 29 H 1.08993 * 109.47081 * 59.99524 * 1 2 3 30 30 H 1.09001 * 109.46725 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46874 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.47097 * 300.00365 * 3 2 1 33 33 H 1.08998 * 109.46690 * 60.00218 * 3 2 1 34 34 H 1.09001 * 109.47117 * 300.00162 * 4 2 1 35 35 H 1.08996 * 109.47174 * 59.99643 * 4 2 1 36 36 H 1.08997 * 109.47416 * 180.02562 * 4 2 1 37 37 H 0.96996 * 120.00354 * 359.97438 * 8 6 5 38 38 H 0.97001 * 120.00485 * 0.02562 * 13 11 9 39 39 H 1.09009 * 109.47454 * 300.27637 * 14 13 11 40 40 H 1.08998 * 109.47492 * 60.27932 * 14 13 11 41 41 H 1.08995 * 109.46638 * 300.00121 * 15 14 13 42 42 H 1.09006 * 109.47139 * 60.00254 * 15 14 13 43 43 H 0.96999 * 120.00239 * 180.02562 * 19 18 16 44 44 H 1.08995 * 112.84863 * 290.33244 * 24 9 8 45 45 H 1.09004 * 113.61869 * 334.56793 * 25 24 9 46 46 H 1.09000 * 113.61456 * 105.46868 * 25 24 9 47 47 H 1.09005 * 113.53408 * 270.80947 * 26 25 24 48 48 H 1.09000 * 113.74326 * 139.94446 * 26 25 24 49 49 H 1.08994 * 113.61185 * 220.08937 * 27 26 25 50 50 H 1.08996 * 113.61199 * 89.18693 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6846 1.1855 6 6 1.6524 -1.9724 1.3382 7 8 0.9509 -2.5095 0.5039 8 7 2.0674 -2.6655 2.4170 9 6 1.6733 -4.0667 2.5835 10 1 1.6268 -4.5494 1.6073 11 6 2.6863 -4.7743 3.4461 12 8 3.6431 -4.1679 3.8795 13 7 2.5286 -6.0809 3.7367 14 6 3.5166 -6.7703 4.5702 15 6 3.1076 -8.2349 4.7400 16 6 4.1236 -8.9439 5.5980 17 1 4.9760 -8.4040 5.9833 18 6 3.9649 -10.2818 5.8911 19 7 2.9273 -10.9393 5.4215 20 14 5.2247 -11.1608 6.9541 21 1 6.2893 -10.2053 7.3525 22 1 4.5599 -11.6956 8.1694 23 1 5.8260 -12.2803 6.1856 24 6 0.2986 -4.1339 3.2517 25 6 -0.4319 -5.4679 3.0250 26 6 -1.7196 -4.6415 2.8547 27 6 -0.8188 -3.4698 2.4301 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9562 0.8900 34 1 1.6767 -1.7488 -1.2493 35 1 1.6766 -0.2074 -2.1392 36 1 3.1300 -0.7216 -1.2491 37 1 2.6270 -2.2367 3.0832 38 1 1.7633 -6.5659 3.3903 39 1 4.4947 -6.7193 4.0918 40 1 3.5650 -6.2910 5.5480 41 1 2.1296 -8.2858 5.2184 42 1 3.0593 -8.7143 3.7622 43 1 2.8155 -11.8805 5.6280 44 1 0.3194 -3.8192 4.2951 45 1 -0.1227 -5.9865 2.1175 46 1 -0.4404 -6.1156 3.9017 47 1 -2.2516 -4.4668 3.7899 48 1 -2.3707 -5.0025 2.0585 49 1 -1.1393 -2.5066 2.8272 50 1 -0.6155 -3.4410 1.3596 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496158971.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:41 Heat of formation + Delta-G solvation = -135.268831 kcal Electronic energy + Delta-G solvation = -28919.072813 eV Core-core repulsion = 24945.782476 eV Total energy + Delta-G solvation = -3973.290336 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.16299 -41.08426 -39.42780 -38.07675 -36.72192 -35.63990 -34.84033 -34.72341 -31.91131 -29.78632 -28.30764 -28.25554 -26.80928 -26.38162 -25.03570 -23.48605 -22.73321 -21.45190 -21.16004 -20.47359 -19.46899 -18.54013 -17.91149 -17.79248 -17.37580 -16.97902 -16.60356 -16.48797 -16.41414 -15.77537 -15.65888 -15.33898 -15.14086 -14.67467 -14.44861 -14.29920 -14.25506 -13.44054 -13.38976 -13.23527 -13.21730 -12.99021 -12.96790 -12.88615 -12.81831 -12.78685 -12.53533 -12.42121 -12.26076 -12.25664 -11.99582 -11.67532 -11.50549 -11.39585 -11.31845 -11.27049 -10.99844 -10.82369 -10.60552 -10.17848 -10.04890 -8.23471 -6.33414 1.01032 1.41102 1.42759 1.43522 1.55136 1.73918 2.18561 2.43798 3.04380 3.11610 3.44501 3.65773 3.72724 3.79421 3.84993 3.94193 3.99174 4.01623 4.02580 4.36241 4.47645 4.49905 4.58584 4.67297 4.73046 4.81464 4.81640 4.85706 4.86284 4.88088 4.92572 4.93682 5.07626 5.09426 5.13744 5.19976 5.22399 5.29700 5.34254 5.39771 5.47406 5.53058 5.59112 5.67732 5.79012 6.16344 6.34835 6.47530 6.79846 7.09221 7.31611 7.35873 8.88360 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.021484 B = 0.002446 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.976600 B =11446.553801 C =12297.216056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.124 3.876 3 C -0.137 4.137 4 C -0.180 4.180 5 O -0.371 6.371 6 C 0.656 3.344 7 O -0.573 6.573 8 N -0.692 5.692 9 C 0.168 3.832 10 H 0.120 0.880 11 C 0.507 3.493 12 O -0.576 6.576 13 N -0.706 5.706 14 C 0.139 3.861 15 C 0.022 3.978 16 C -0.544 4.544 17 H 0.059 0.941 18 C 0.008 3.992 19 N -0.925 5.925 20 Si 0.963 3.037 21 H -0.266 1.266 22 H -0.277 1.277 23 H -0.278 1.278 24 C -0.122 4.122 25 C -0.141 4.141 26 C -0.131 4.131 27 C -0.128 4.128 28 H 0.060 0.940 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.104 0.896 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.092 0.908 36 H 0.055 0.945 37 H 0.414 0.586 38 H 0.411 0.589 39 H 0.049 0.951 40 H 0.052 0.948 41 H 0.012 0.988 42 H 0.009 0.991 43 H 0.265 0.735 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.074 0.926 47 H 0.084 0.916 48 H 0.078 0.922 49 H 0.058 0.942 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.224 22.354 -11.767 26.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.088 3.912 3 C -0.194 4.194 4 C -0.238 4.238 5 O -0.286 6.286 6 C 0.410 3.590 7 O -0.464 6.464 8 N -0.352 5.352 9 C 0.060 3.940 10 H 0.138 0.862 11 C 0.293 3.707 12 O -0.456 6.456 13 N -0.357 5.357 14 C 0.016 3.984 15 C -0.015 4.015 16 C -0.583 4.583 17 H 0.077 0.923 18 C -0.191 4.191 19 N -0.565 5.565 20 Si 0.788 3.212 21 H -0.190 1.190 22 H -0.203 1.203 23 H -0.204 1.204 24 C -0.141 4.141 25 C -0.179 4.179 26 C -0.168 4.168 27 C -0.165 4.165 28 H 0.079 0.921 29 H 0.109 0.891 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.122 0.878 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.110 0.890 36 H 0.074 0.926 37 H 0.251 0.749 38 H 0.248 0.752 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.030 0.970 42 H 0.027 0.973 43 H 0.074 0.926 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.093 0.907 47 H 0.103 0.897 48 H 0.096 0.904 49 H 0.077 0.923 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.955 22.423 -11.918 26.926 hybrid contribution 0.659 -0.898 0.819 1.383 sum -8.296 21.525 -11.098 25.599 Atomic orbital electron populations 1.22465 0.93411 1.04137 1.03476 1.22445 0.94974 0.92472 0.81275 1.21896 1.02249 0.90948 1.04334 1.22482 1.01355 1.02507 0.97408 1.86332 1.71669 1.22953 1.47648 1.17902 0.78565 0.80883 0.81614 1.90823 1.41396 1.70540 1.43626 1.44307 1.55399 1.11206 1.24253 1.20762 0.92490 0.80646 1.00087 0.86225 1.20867 0.86291 0.82545 0.80970 1.90671 1.33331 1.66605 1.55020 1.46089 1.28069 1.09723 1.51778 1.21307 0.90738 0.93190 0.93157 1.19143 0.96506 0.89549 0.96345 1.21481 1.09338 0.95500 1.31968 0.92301 1.25840 0.97605 0.98369 0.97307 1.70055 1.30130 1.10064 1.46207 0.85430 0.79007 0.78386 0.78423 1.19004 1.20282 1.20358 1.23003 0.90831 1.00073 1.00241 1.23080 0.96697 0.95114 1.02995 1.22768 0.95896 0.96012 1.02123 1.23077 0.94641 0.97444 1.01371 0.92101 0.89149 0.91212 0.91632 0.87790 0.91270 0.91527 0.88971 0.92552 0.74943 0.75224 0.93294 0.92976 0.97011 0.97293 0.92571 0.88879 0.88812 0.90709 0.89704 0.90367 0.92346 0.88193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.80 8.37 71.98 0.60 -2.19 16 2 C 0.12 2.14 1.13 -10.79 -0.01 2.13 16 3 C -0.14 -1.59 8.85 71.98 0.64 -0.95 16 4 C -0.18 -3.10 8.37 71.98 0.60 -2.49 16 5 O -0.37 -8.49 9.94 -55.45 -0.55 -9.04 16 6 C 0.66 16.37 7.39 129.79 0.96 17.33 16 7 O -0.57 -14.97 8.69 19.79 0.17 -14.79 16 8 N -0.69 -17.38 4.93 -573.72 -2.83 -20.21 16 9 C 0.17 4.22 2.37 44.24 0.10 4.33 16 10 H 0.12 2.96 7.41 -2.39 -0.02 2.95 16 11 C 0.51 16.21 7.22 87.66 0.63 16.85 16 12 O -0.58 -22.16 15.84 -3.04 -0.05 -22.21 16 13 N -0.71 -23.36 5.43 -463.05 -2.52 -25.87 16 14 C 0.14 5.76 5.61 86.38 0.48 6.25 16 15 C 0.02 1.08 5.09 29.85 0.15 1.23 16 16 C -0.54 -29.81 9.11 25.60 0.23 -29.57 16 17 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 18 C 0.01 0.42 5.46 84.65 0.46 0.89 16 19 N -0.92 -53.40 13.29 21.45 0.28 -53.12 16 20 Si 0.96 43.14 29.54 68.60 2.03 45.16 16 21 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 22 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 23 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 24 C -0.12 -2.64 3.26 -10.27 -0.03 -2.67 16 25 C -0.14 -2.79 5.93 31.18 0.18 -2.60 16 26 C -0.13 -2.31 8.09 31.18 0.25 -2.05 16 27 C -0.13 -2.57 6.50 31.12 0.20 -2.37 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.09 1.00 8.14 -2.39 -0.02 0.99 16 30 H 0.07 1.41 5.88 -2.39 -0.01 1.40 16 31 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.07 1.47 5.88 -2.39 -0.01 1.46 16 35 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.41 10.59 7.90 -92.71 -0.73 9.86 16 38 H 0.41 11.90 6.68 -92.71 -0.62 11.28 16 39 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 40 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 43 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 44 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.09 1.75 7.99 -2.39 -0.02 1.73 16 46 H 0.07 1.55 8.09 -2.39 -0.02 1.53 16 47 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 48 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 49 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 50 H 0.10 2.29 5.52 -2.39 -0.01 2.28 16 Total: -1.00 -64.71 395.26 1.59 -63.12 By element: Atomic # 1 Polarization: 33.29 SS G_CDS: -0.41 Total: 32.88 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: 5.46 Total: 4.08 kcal Atomic # 7 Polarization: -94.14 SS G_CDS: -5.06 Total: -99.20 kcal Atomic # 8 Polarization: -45.62 SS G_CDS: -0.43 Total: -46.04 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Total: -64.71 1.59 -63.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496158971.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.150 kcal (2) G-P(sol) polarization free energy of solvation -64.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds