Wall clock time and date at job start Tue Mar 31 2020 15:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47129 * 2 1 4 4 C 1.52999 * 109.47524 * 239.99612 * 2 1 3 5 5 O 1.45203 * 109.47101 * 119.99536 * 2 1 3 6 6 C 1.34636 * 116.99909 * 60.00134 * 5 2 1 7 7 O 1.21509 * 120.00106 * 0.02562 * 6 5 2 8 8 N 1.34781 * 120.00070 * 179.97438 * 6 5 2 9 9 C 1.46499 * 119.99874 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.47391 * 325.00213 * 9 8 6 11 11 C 1.50699 * 109.47060 * 205.00285 * 9 8 6 12 12 O 1.21277 * 119.99833 * 359.97438 * 11 9 8 13 13 N 1.34773 * 120.00068 * 180.02562 * 11 9 8 14 14 C 1.46500 * 119.99996 * 179.97438 * 13 11 9 15 15 C 1.53002 * 109.47317 * 179.97438 * 14 13 11 16 16 C 1.50699 * 109.47389 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00019 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99908 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99974 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 119.99895 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47183 * 60.00292 * 20 18 16 22 22 H 1.48494 * 109.47325 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47430 * 300.00516 * 20 18 16 24 24 C 1.53000 * 109.46840 * 85.00543 * 9 8 6 25 25 C 1.53776 * 113.61909 * 37.49259 * 24 9 8 26 26 C 1.53773 * 87.08223 * 220.02130 * 25 24 9 27 27 C 1.53773 * 87.08492 * 25.43195 * 26 25 24 28 28 H 1.09001 * 109.47288 * 299.99905 * 1 2 3 29 29 H 1.08997 * 109.47246 * 60.00117 * 1 2 3 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47317 * 179.97438 * 3 2 1 32 32 H 1.09005 * 109.47032 * 299.99708 * 3 2 1 33 33 H 1.09001 * 109.47629 * 59.99553 * 3 2 1 34 34 H 1.09002 * 109.47054 * 300.00242 * 4 2 1 35 35 H 1.08997 * 109.46638 * 59.99899 * 4 2 1 36 36 H 1.09003 * 109.47318 * 179.97438 * 4 2 1 37 37 H 0.97002 * 119.99716 * 0.02562 * 8 6 5 38 38 H 0.96998 * 119.99906 * 359.97438 * 13 11 9 39 39 H 1.09002 * 109.47092 * 299.99922 * 14 13 11 40 40 H 1.09004 * 109.47042 * 59.99923 * 14 13 11 41 41 H 1.09002 * 109.46838 * 300.00552 * 15 14 13 42 42 H 1.09001 * 109.47248 * 59.99589 * 15 14 13 43 43 H 0.96999 * 120.00006 * 179.97438 * 19 18 16 44 44 H 1.08998 * 112.84645 * 168.80305 * 24 9 8 45 45 H 1.09003 * 113.61290 * 334.57551 * 25 24 9 46 46 H 1.09002 * 113.61317 * 105.46865 * 25 24 9 47 47 H 1.09007 * 113.61385 * 270.88186 * 26 25 24 48 48 H 1.09003 * 113.69017 * 139.99765 * 26 25 24 49 49 H 1.08998 * 113.61600 * 220.01981 * 27 26 25 50 50 H 1.09003 * 113.61419 * 89.11448 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0139 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3385 7 8 0.9516 -2.5097 0.5037 8 7 2.0680 -2.6656 2.4169 9 6 1.6739 -4.0667 2.5834 10 1 0.6645 -4.2086 2.1972 11 6 1.7074 -4.4274 4.0462 12 8 2.0292 -3.5962 4.8685 13 7 1.3806 -5.6741 4.4405 14 6 1.4137 -6.0250 5.8625 15 6 1.0020 -7.4882 6.0365 16 6 1.0355 -7.8490 7.4993 17 1 1.3221 -7.1087 8.2316 18 6 0.7001 -9.1240 7.9027 19 7 0.3515 -10.0256 7.0109 20 14 0.7422 -9.5714 9.7158 21 1 -0.1996 -8.6994 10.4629 22 1 0.3425 -10.9915 9.8847 23 1 2.1178 -9.3789 10.2414 24 6 2.6452 -4.9645 1.8144 25 6 4.1041 -4.4813 1.8671 26 6 4.2082 -4.8832 0.3865 27 6 2.6867 -4.6759 0.3044 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9563 -0.8901 33 1 1.6766 1.9565 0.8899 34 1 1.6767 -1.7490 -1.2491 35 1 1.6767 -0.2075 -2.1391 36 1 3.1301 -0.7209 -1.2493 37 1 2.6276 -2.2366 3.0830 38 1 1.1236 -6.3390 3.7827 39 1 2.4232 -5.8828 6.2484 40 1 0.7218 -5.3855 6.4107 41 1 -0.0075 -7.6299 5.6506 42 1 1.6936 -8.1280 5.4882 43 1 0.1159 -10.9227 7.2947 44 1 2.5248 -6.0210 2.0538 45 1 4.2030 -3.4091 2.0365 46 1 4.7372 -5.0751 2.5264 47 1 4.5167 -5.9178 0.2355 48 1 4.7782 -4.1789 -0.2195 49 1 2.1756 -5.4269 -0.2979 50 1 2.3982 -3.6569 0.0466 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496158972.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:47 Heat of formation + Delta-G solvation = -108.165725 kcal Electronic energy + Delta-G solvation = -29016.041340 eV Core-core repulsion = 25043.926282 eV Total energy + Delta-G solvation = -3972.115057 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.35685 -39.95788 -38.40728 -37.06973 -35.14182 -34.59647 -33.83937 -32.92536 -30.32095 -28.54871 -27.68292 -27.63237 -25.67253 -24.91541 -23.99206 -22.43328 -21.03615 -20.42614 -20.11607 -19.26958 -18.55469 -17.00286 -16.88660 -16.50508 -16.33319 -15.80324 -15.56191 -15.18059 -14.86237 -14.63009 -14.56146 -14.41703 -13.94027 -13.65962 -13.35747 -12.86084 -12.79445 -12.69469 -12.59372 -12.33752 -12.32428 -12.15580 -12.04721 -11.84551 -11.66274 -11.54988 -11.26247 -11.05854 -10.91369 -10.69592 -10.66158 -10.45054 -10.38208 -10.33127 -10.14653 -9.84021 -9.56187 -9.34631 -9.10226 -8.63564 -8.41499 -6.12107 -4.15320 1.92272 2.63968 2.80520 3.29337 3.33454 3.35578 3.49736 3.98455 4.38128 4.44302 4.47920 4.49166 4.57728 4.63390 4.65179 4.79962 4.98755 5.14315 5.18905 5.24948 5.26510 5.27101 5.41453 5.42530 5.51345 5.56624 5.59598 5.68794 5.70375 5.78351 5.87088 5.93014 6.02410 6.03803 6.12974 6.22753 6.26699 6.27779 6.33714 6.49662 6.65987 6.77506 7.30269 7.46231 7.56707 7.82528 7.86513 8.21574 8.24442 8.44994 8.90180 9.49672 10.99342 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.022378 B = 0.002399 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.929415 B =11669.751464 C =12249.560157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.141 4.141 4 C -0.184 4.184 5 O -0.363 6.363 6 C 0.655 3.345 7 O -0.563 6.563 8 N -0.687 5.687 9 C 0.153 3.847 10 H 0.118 0.882 11 C 0.506 3.494 12 O -0.545 6.545 13 N -0.713 5.713 14 C 0.122 3.878 15 C 0.013 3.987 16 C -0.523 4.523 17 H 0.059 0.941 18 C 0.059 3.941 19 N -0.893 5.893 20 Si 0.897 3.103 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 C -0.124 4.124 25 C -0.133 4.133 26 C -0.143 4.143 27 C -0.141 4.141 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.415 0.585 38 H 0.400 0.600 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.023 0.977 42 H 0.023 0.977 43 H 0.263 0.737 44 H 0.107 0.893 45 H 0.082 0.918 46 H 0.069 0.931 47 H 0.078 0.922 48 H 0.062 0.938 49 H 0.066 0.934 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.590 17.911 -18.750 26.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.278 6.278 6 C 0.409 3.591 7 O -0.454 6.454 8 N -0.347 5.347 9 C 0.046 3.954 10 H 0.136 0.864 11 C 0.290 3.710 12 O -0.423 6.423 13 N -0.362 5.362 14 C 0.000 4.000 15 C -0.025 4.025 16 C -0.562 4.562 17 H 0.077 0.923 18 C -0.142 4.142 19 N -0.532 5.532 20 Si 0.725 3.275 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.201 1.201 24 C -0.144 4.144 25 C -0.171 4.171 26 C -0.181 4.181 27 C -0.178 4.178 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.253 0.747 38 H 0.234 0.766 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.041 0.959 42 H 0.041 0.959 43 H 0.073 0.927 44 H 0.125 0.875 45 H 0.100 0.900 46 H 0.087 0.913 47 H 0.097 0.903 48 H 0.081 0.919 49 H 0.084 0.916 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.409 18.116 -18.595 26.333 hybrid contribution 0.039 -0.564 0.978 1.129 sum 4.447 17.552 -17.618 25.264 Atomic orbital electron populations 1.22524 0.93918 1.05238 1.02458 1.22070 0.94433 0.91483 0.82041 1.21865 1.02253 0.92603 1.03121 1.22532 1.01532 1.03611 0.96411 1.86323 1.71479 1.23494 1.46463 1.17897 0.78650 0.80382 0.82144 1.90866 1.41113 1.70140 1.43245 1.44339 1.55154 1.11338 1.23873 1.20668 1.01260 0.80000 0.93520 0.86415 1.20308 0.77825 0.83175 0.89650 1.90682 1.48514 1.48943 1.54194 1.46249 1.67446 1.11345 1.11200 1.21786 1.01032 0.99664 0.77511 1.19325 0.97204 0.88007 0.97932 1.20992 1.46552 0.96701 0.91944 0.92304 1.24992 0.94965 0.96387 0.97905 1.69940 1.45581 1.04132 1.33547 0.86567 0.78639 0.77358 0.84942 1.20104 1.21234 1.20107 1.23051 0.95189 0.99462 0.96651 1.22898 0.95531 1.01624 0.97043 1.22801 0.97194 1.01403 0.96653 1.23320 0.95654 1.04338 0.94518 0.92151 0.91209 0.89193 0.91477 0.90171 0.91428 0.89176 0.91204 0.92199 0.74698 0.76597 0.92326 0.92382 0.95864 0.95859 0.92745 0.87543 0.89963 0.91257 0.90301 0.91889 0.91563 0.87734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.66 8.37 37.15 0.31 -1.35 16 2 C 0.14 1.24 1.13 -90.62 -0.10 1.14 16 3 C -0.14 -0.94 8.85 37.16 0.33 -0.61 16 4 C -0.18 -1.55 8.37 37.16 0.31 -1.24 16 5 O -0.36 -4.14 9.94 -40.31 -0.40 -4.54 16 6 C 0.66 8.09 6.86 54.06 0.37 8.46 16 7 O -0.56 -7.41 9.04 -19.28 -0.17 -7.59 16 8 N -0.69 -8.43 3.47 -59.87 -0.21 -8.64 16 9 C 0.15 1.93 2.60 -69.08 -0.18 1.75 16 10 H 0.12 1.47 7.58 -51.93 -0.39 1.08 16 11 C 0.51 7.96 7.21 -10.99 -0.08 7.88 16 12 O -0.55 -10.28 15.84 5.56 0.09 -10.19 16 13 N -0.71 -11.60 5.40 -60.29 -0.33 -11.93 16 14 C 0.12 2.48 5.61 -4.04 -0.02 2.45 16 15 C 0.01 0.31 5.09 -27.88 -0.14 0.16 16 16 C -0.52 -14.23 9.11 -34.44 -0.31 -14.54 16 17 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -25.74 13.29 55.43 0.74 -25.01 16 20 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 C -0.12 -1.38 3.50 -89.81 -0.31 -1.69 16 25 C -0.13 -1.46 7.46 -25.93 -0.19 -1.65 16 26 C -0.14 -1.41 8.08 -25.93 -0.21 -1.62 16 27 C -0.14 -1.52 7.22 -25.92 -0.19 -1.70 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.09 1.01 5.88 -51.93 -0.31 0.70 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.09 0.94 5.88 -51.93 -0.31 0.63 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.42 5.16 7.74 -40.82 -0.32 4.85 16 38 H 0.40 5.64 7.93 -40.82 -0.32 5.31 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 44 H 0.11 1.14 7.54 -51.93 -0.39 0.75 16 45 H 0.08 0.91 6.77 -51.93 -0.35 0.56 16 46 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 49 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.10 1.24 4.12 -51.93 -0.21 1.03 16 LS Contribution 394.37 15.07 5.94 5.94 Total: -1.00 -30.53 394.37 -8.36 -38.89 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -8.48 Total: 7.96 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -0.52 Total: -1.03 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: 0.20 Total: -45.57 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.49 Total: -22.32 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.53 -8.36 -38.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496158972.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.276 kcal (2) G-P(sol) polarization free energy of solvation -30.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds