Wall clock time and date at job start Tue Mar 31 2020 16:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47120 * 2 1 4 4 H 1.09004 * 109.46788 * 304.99947 * 3 2 1 5 5 C 1.50699 * 109.47006 * 185.00170 * 3 2 1 6 6 H 1.07996 * 119.99473 * 239.99915 * 5 3 2 7 7 C 1.37867 * 120.00167 * 60.00061 * 5 3 2 8 8 N 1.31518 * 120.00196 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 120.00228 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46761 * 59.99803 * 9 7 5 11 11 H 1.48493 * 109.47428 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46745 * 300.00010 * 9 7 5 13 13 N 1.46499 * 109.46719 * 64.99805 * 3 2 1 14 14 C 1.34773 * 120.00075 * 274.99627 * 13 3 2 15 15 O 1.21276 * 120.00322 * 0.02562 * 14 13 3 16 16 C 1.50704 * 119.99917 * 180.02562 * 14 13 3 17 17 H 1.09005 * 112.84587 * 311.19912 * 16 14 13 18 18 C 1.53777 * 113.69351 * 82.46700 * 16 14 13 19 19 C 1.53778 * 87.08221 * 139.99221 * 18 16 14 20 20 H 1.09002 * 113.68900 * 89.12517 * 19 18 16 21 21 N 1.46498 * 113.61220 * 220.02018 * 19 18 16 22 22 C 1.34777 * 119.99828 * 252.21874 * 21 19 18 23 23 O 1.21513 * 119.99898 * 0.28095 * 22 21 19 24 24 O 1.34638 * 120.00235 * 180.27525 * 22 21 19 25 25 C 1.45195 * 117.00135 * 180.02562 * 24 22 21 26 26 C 1.52999 * 109.47224 * 60.00489 * 25 24 22 27 27 C 1.53005 * 109.47161 * 180.02562 * 25 24 22 28 28 C 1.53002 * 109.47089 * 299.99988 * 25 24 22 29 29 C 1.53779 * 113.61520 * 180.02562 * 16 14 13 30 30 H 1.08998 * 109.47350 * 300.00006 * 1 2 3 31 31 H 1.09005 * 109.47048 * 60.00233 * 1 2 3 32 32 H 1.09005 * 109.46984 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47046 * 240.00299 * 2 1 3 34 34 H 1.08996 * 109.47028 * 119.99982 * 2 1 3 35 35 H 0.97003 * 119.99817 * 180.02562 * 8 7 5 36 36 H 0.97000 * 119.99735 * 95.00394 * 13 3 2 37 37 H 1.09001 * 113.61338 * 25.43949 * 18 16 14 38 38 H 1.09000 * 113.61355 * 254.54212 * 18 16 14 39 39 H 0.97001 * 120.00384 * 72.50320 * 21 19 18 40 40 H 1.09001 * 109.47095 * 59.99964 * 26 25 24 41 41 H 1.09006 * 109.47298 * 180.02562 * 26 25 24 42 42 H 1.09003 * 109.46856 * 299.99470 * 26 25 24 43 43 H 1.08995 * 109.47042 * 59.99563 * 27 25 24 44 44 H 1.08992 * 109.47205 * 180.02562 * 27 25 24 45 45 H 1.09001 * 109.46587 * 300.00252 * 27 25 24 46 46 H 1.09003 * 109.46840 * 60.00621 * 28 25 24 47 47 H 1.09006 * 109.47115 * 179.97438 * 28 25 24 48 48 H 1.08995 * 109.47291 * 299.99982 * 28 25 24 49 49 H 1.08997 * 113.61777 * 105.38173 * 29 16 14 50 50 H 1.09000 * 113.68921 * 334.49022 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2279 8 7 3.4062 0.3366 -2.1729 9 14 6.0050 0.8813 -1.3819 10 1 6.5975 0.1473 -0.2350 11 1 6.3978 0.2179 -2.6509 12 1 6.4994 2.2816 -1.3822 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3396 2.6320 0.4344 16 6 0.0366 3.3385 2.6545 17 1 0.2334 2.7236 3.5327 18 6 0.5553 4.7805 2.7833 19 6 -0.8083 5.1323 3.4010 20 1 -0.8439 5.0084 4.4833 21 7 -1.3369 6.4250 2.9586 22 6 -1.3551 7.4717 3.8074 23 8 -0.9282 7.3446 4.9380 24 8 -1.8460 8.6583 3.4026 25 6 -1.8335 9.7413 4.3697 26 6 -0.3935 10.0194 4.8055 27 6 -2.4263 11.0001 3.7333 28 6 -2.6682 9.3456 5.5893 29 6 -1.3809 3.9341 2.6249 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.8294 -0.0618 -2.9495 36 1 2.2719 2.1231 1.9978 37 1 0.7387 5.2658 1.8246 38 1 1.3890 4.8842 3.4777 39 1 -1.6777 6.5265 2.0561 40 1 0.2011 10.3013 3.9365 41 1 -0.3842 10.8321 5.5318 42 1 0.0284 9.1225 5.2590 43 1 -3.4522 10.8018 3.4230 44 1 -2.4166 11.8132 4.4590 45 1 -1.8320 11.2821 2.8641 46 1 -2.2462 8.4487 6.0429 47 1 -2.6585 10.1584 6.3155 48 1 -3.6941 9.1475 5.2788 49 1 -2.1098 3.3547 3.1915 50 1 -1.7284 4.1882 1.6236 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496162894.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:20 Heat of formation + Delta-G solvation = -114.163475 kcal Electronic energy + Delta-G solvation = -28365.653924 eV Core-core repulsion = 24393.278784 eV Total energy + Delta-G solvation = -3972.375139 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.01120 -39.95081 -38.08953 -36.78443 -34.97353 -34.47392 -33.17527 -32.32740 -30.87943 -27.69343 -27.63673 -27.35354 -25.76398 -25.71578 -23.22625 -22.52114 -20.72016 -20.38677 -19.53699 -19.20232 -18.19293 -17.54508 -16.66548 -16.28968 -15.96910 -15.56044 -15.33925 -14.98544 -14.65300 -14.60194 -14.27545 -13.98167 -13.65054 -13.20402 -12.80492 -12.77485 -12.69320 -12.47014 -12.39131 -12.17237 -12.16153 -11.96195 -11.67408 -11.61731 -11.53009 -11.32375 -11.20375 -11.06140 -10.97404 -10.82597 -10.61668 -10.55788 -10.32684 -10.19129 -10.15040 -9.63232 -9.26087 -9.06036 -8.89325 -8.49595 -7.80980 -6.12646 -4.22133 2.02471 2.68867 3.24893 3.30443 3.31315 3.35921 3.92351 4.15930 4.37895 4.43912 4.45462 4.47812 4.54800 4.62703 4.80985 4.90673 5.17851 5.18572 5.25406 5.27315 5.40203 5.46763 5.55134 5.58501 5.62265 5.68255 5.70176 5.77653 5.88080 5.93940 5.98887 6.02612 6.14644 6.36638 6.38975 6.45165 6.46230 6.65991 7.03871 7.19471 7.30674 7.36936 7.46874 7.61887 7.73818 7.90279 8.18353 8.24955 8.69079 8.77882 9.15622 9.45581 10.92518 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.019465 B = 0.002280 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.151719 B =12279.345745 C =13111.041686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.706 5.706 14 C 0.512 3.488 15 O -0.549 6.549 16 C -0.137 4.137 17 H 0.111 0.889 18 C -0.134 4.134 19 C 0.138 3.862 20 H 0.120 0.880 21 N -0.697 5.697 22 C 0.650 3.350 23 O -0.571 6.571 24 O -0.366 6.366 25 C 0.136 3.864 26 C -0.184 4.184 27 C -0.141 4.141 28 C -0.183 4.183 29 C -0.120 4.120 30 H 0.039 0.961 31 H 0.049 0.951 32 H 0.022 0.978 33 H 0.098 0.902 34 H 0.030 0.970 35 H 0.265 0.735 36 H 0.388 0.612 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.408 0.592 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.066 0.934 44 H 0.079 0.921 45 H 0.067 0.933 46 H 0.088 0.912 47 H 0.069 0.931 48 H 0.059 0.941 49 H 0.078 0.922 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.632 15.836 13.787 23.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.353 5.353 14 C 0.297 3.703 15 O -0.429 6.429 16 C -0.159 4.159 17 H 0.129 0.871 18 C -0.173 4.173 19 C 0.034 3.966 20 H 0.138 0.862 21 N -0.355 5.355 22 C 0.404 3.596 23 O -0.460 6.460 24 O -0.281 6.281 25 C 0.099 3.901 26 C -0.241 4.241 27 C -0.198 4.198 28 C -0.240 4.240 29 C -0.158 4.158 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.041 0.959 33 H 0.117 0.883 34 H 0.049 0.951 35 H 0.075 0.925 36 H 0.220 0.780 37 H 0.110 0.890 38 H 0.099 0.901 39 H 0.243 0.757 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.107 0.893 43 H 0.085 0.915 44 H 0.098 0.902 45 H 0.086 0.914 46 H 0.107 0.893 47 H 0.088 0.912 48 H 0.078 0.922 49 H 0.097 0.903 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.957 15.724 13.488 23.436 hybrid contribution 1.257 -0.028 -0.115 1.263 sum -9.700 15.696 13.373 22.788 Atomic orbital electron populations 1.21837 0.98356 0.97987 1.01214 1.21935 0.92605 0.99869 1.02243 1.18766 0.94117 0.89160 0.81126 0.93421 1.21200 0.90790 1.39035 1.06248 0.92181 1.24883 0.98551 0.94828 0.95411 1.69886 1.35189 1.37550 1.09359 0.86529 0.84944 0.78301 0.77445 1.20166 1.21148 1.20216 1.46490 1.14692 1.55617 1.18479 1.19999 0.82743 0.79034 0.88558 1.90655 1.51596 1.60087 1.40521 1.22549 0.98163 0.96621 0.98549 0.87096 1.23398 0.97539 0.94017 1.02328 1.22650 0.94136 0.79503 1.00323 0.86192 1.44851 1.66044 1.08730 1.15871 1.18171 0.76929 0.80700 0.83844 1.90884 1.52039 1.84057 1.19069 1.86312 1.77306 1.19098 1.45393 1.22054 0.96637 0.83927 0.87460 1.22519 0.95197 1.04181 1.02210 1.21863 1.01703 0.94558 1.01706 1.22517 0.99900 1.04219 0.97398 1.23240 0.95926 0.94714 1.01962 0.94235 0.93209 0.95925 0.88342 0.95082 0.92526 0.77969 0.88995 0.90142 0.75658 0.92117 0.91222 0.89289 0.91482 0.90191 0.91427 0.89330 0.91219 0.92215 0.90296 0.87904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.51 37.16 0.32 -2.68 16 2 C -0.13 -3.06 5.45 -26.73 -0.15 -3.21 16 3 C 0.27 6.64 2.24 -69.08 -0.15 6.49 16 4 H 0.05 1.37 7.58 -51.93 -0.39 0.97 16 5 C -0.53 -13.90 8.73 -34.44 -0.30 -14.20 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.51 11.29 55.43 0.63 -23.88 16 9 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 13 N -0.71 -13.99 5.02 -54.93 -0.28 -14.26 16 14 C 0.51 9.38 5.93 -10.98 -0.07 9.32 16 15 O -0.55 -11.97 13.04 5.56 0.07 -11.90 16 16 C -0.14 -1.77 4.14 -90.96 -0.38 -2.15 16 17 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 18 C -0.13 -1.59 7.43 -25.92 -0.19 -1.78 16 19 C 0.14 1.49 4.24 -67.10 -0.28 1.20 16 20 H 0.12 1.30 7.46 -51.93 -0.39 0.91 16 21 N -0.70 -7.54 5.36 -57.92 -0.31 -7.85 16 22 C 0.65 7.97 8.06 54.06 0.44 8.41 16 23 O -0.57 -7.99 11.48 -19.28 -0.22 -8.21 16 24 O -0.37 -4.13 9.94 -40.32 -0.40 -4.53 16 25 C 0.14 1.25 1.13 -90.62 -0.10 1.15 16 26 C -0.18 -1.68 8.37 37.16 0.31 -1.37 16 27 C -0.14 -0.94 8.85 37.16 0.33 -0.61 16 28 C -0.18 -1.60 8.37 37.16 0.31 -1.29 16 29 C -0.12 -1.38 7.16 -25.90 -0.19 -1.56 16 30 H 0.04 0.83 5.64 -51.93 -0.29 0.54 16 31 H 0.05 1.17 7.85 -51.93 -0.41 0.76 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 34 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.39 6.74 8.54 -40.82 -0.35 6.39 16 37 H 0.09 1.22 8.10 -51.93 -0.42 0.80 16 38 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.41 3.87 8.84 -40.82 -0.36 3.51 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.09 1.02 5.88 -51.93 -0.31 0.71 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.09 0.97 5.88 -51.93 -0.31 0.67 16 47 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 50 H 0.10 1.32 7.42 -51.93 -0.39 0.94 16 LS Contribution 393.78 15.07 5.93 5.93 Total: -1.00 -30.71 393.78 -8.33 -39.04 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: -8.53 Total: 10.81 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -0.20 Total: -0.61 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: 0.04 Total: -45.99 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.55 Total: -24.63 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.71 -8.33 -39.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496162894.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.127 kcal (2) G-P(sol) polarization free energy of solvation -30.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds