Wall clock time and date at job start Tue Mar 31 2020 16:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47120 * 2 1 4 4 H 1.09004 * 109.46788 * 304.99947 * 3 2 1 5 5 C 1.50699 * 109.47006 * 185.00170 * 3 2 1 6 6 H 1.07996 * 119.99473 * 239.99915 * 5 3 2 7 7 C 1.37867 * 120.00167 * 60.00061 * 5 3 2 8 8 N 1.31518 * 120.00196 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 120.00228 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46761 * 59.99803 * 9 7 5 11 11 H 1.48493 * 109.47428 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46745 * 300.00010 * 9 7 5 13 13 N 1.46499 * 109.46719 * 64.99805 * 3 2 1 14 14 C 1.34773 * 120.00075 * 274.99627 * 13 3 2 15 15 O 1.21276 * 120.00322 * 0.02562 * 14 13 3 16 16 C 1.50704 * 119.99917 * 180.02562 * 14 13 3 17 17 H 1.09005 * 112.84587 * 311.19912 * 16 14 13 18 18 C 1.53777 * 113.69351 * 82.46700 * 16 14 13 19 19 C 1.53778 * 87.08221 * 139.99221 * 18 16 14 20 20 H 1.09002 * 113.68900 * 89.12517 * 19 18 16 21 21 N 1.46498 * 113.61220 * 220.02018 * 19 18 16 22 22 C 1.34777 * 119.99828 * 252.21874 * 21 19 18 23 23 O 1.21513 * 119.99898 * 0.28095 * 22 21 19 24 24 O 1.34638 * 120.00235 * 180.27525 * 22 21 19 25 25 C 1.45195 * 117.00135 * 180.02562 * 24 22 21 26 26 C 1.52999 * 109.47224 * 60.00489 * 25 24 22 27 27 C 1.53005 * 109.47161 * 180.02562 * 25 24 22 28 28 C 1.53002 * 109.47089 * 299.99988 * 25 24 22 29 29 C 1.53779 * 113.61520 * 180.02562 * 16 14 13 30 30 H 1.08998 * 109.47350 * 300.00006 * 1 2 3 31 31 H 1.09005 * 109.47048 * 60.00233 * 1 2 3 32 32 H 1.09005 * 109.46984 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47046 * 240.00299 * 2 1 3 34 34 H 1.08996 * 109.47028 * 119.99982 * 2 1 3 35 35 H 0.97003 * 119.99817 * 180.02562 * 8 7 5 36 36 H 0.97000 * 119.99735 * 95.00394 * 13 3 2 37 37 H 1.09001 * 113.61338 * 25.43949 * 18 16 14 38 38 H 1.09000 * 113.61355 * 254.54212 * 18 16 14 39 39 H 0.97001 * 120.00384 * 72.50320 * 21 19 18 40 40 H 1.09001 * 109.47095 * 59.99964 * 26 25 24 41 41 H 1.09006 * 109.47298 * 180.02562 * 26 25 24 42 42 H 1.09003 * 109.46856 * 299.99470 * 26 25 24 43 43 H 1.08995 * 109.47042 * 59.99563 * 27 25 24 44 44 H 1.08992 * 109.47205 * 180.02562 * 27 25 24 45 45 H 1.09001 * 109.46587 * 300.00252 * 27 25 24 46 46 H 1.09003 * 109.46840 * 60.00621 * 28 25 24 47 47 H 1.09006 * 109.47115 * 179.97438 * 28 25 24 48 48 H 1.08995 * 109.47291 * 299.99982 * 28 25 24 49 49 H 1.08997 * 113.61777 * 105.38173 * 29 16 14 50 50 H 1.09000 * 113.68921 * 334.49022 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2279 8 7 3.4062 0.3366 -2.1729 9 14 6.0050 0.8813 -1.3819 10 1 6.5975 0.1473 -0.2350 11 1 6.3978 0.2179 -2.6509 12 1 6.4994 2.2816 -1.3822 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3396 2.6320 0.4344 16 6 0.0366 3.3385 2.6545 17 1 0.2334 2.7236 3.5327 18 6 0.5553 4.7805 2.7833 19 6 -0.8083 5.1323 3.4010 20 1 -0.8439 5.0084 4.4833 21 7 -1.3369 6.4250 2.9586 22 6 -1.3551 7.4717 3.8074 23 8 -0.9282 7.3446 4.9380 24 8 -1.8460 8.6583 3.4026 25 6 -1.8335 9.7413 4.3697 26 6 -0.3935 10.0194 4.8055 27 6 -2.4263 11.0001 3.7333 28 6 -2.6682 9.3456 5.5893 29 6 -1.3809 3.9341 2.6249 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.8294 -0.0618 -2.9495 36 1 2.2719 2.1231 1.9978 37 1 0.7387 5.2658 1.8246 38 1 1.3890 4.8842 3.4777 39 1 -1.6777 6.5265 2.0561 40 1 0.2011 10.3013 3.9365 41 1 -0.3842 10.8321 5.5318 42 1 0.0284 9.1225 5.2590 43 1 -3.4522 10.8018 3.4230 44 1 -2.4166 11.8132 4.4590 45 1 -1.8320 11.2821 2.8641 46 1 -2.2462 8.4487 6.0429 47 1 -2.6585 10.1584 6.3155 48 1 -3.6941 9.1475 5.2788 49 1 -2.1098 3.3547 3.1915 50 1 -1.7284 4.1882 1.6236 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496162894.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:17 Heat of formation + Delta-G solvation = -134.576452 kcal Electronic energy + Delta-G solvation = -28366.539097 eV Core-core repulsion = 24393.278784 eV Total energy + Delta-G solvation = -3973.260313 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 2.51 seconds Orbital eigenvalues (eV) -41.92716 -41.16504 -39.32810 -37.78034 -36.73585 -35.32010 -34.27920 -34.02389 -32.68320 -29.16472 -28.32779 -28.27170 -27.05096 -26.68461 -24.94766 -23.67952 -22.05507 -21.36898 -21.09664 -20.44329 -19.17860 -18.89107 -17.89549 -17.32516 -17.19538 -17.12077 -16.54877 -16.35472 -15.97513 -15.46202 -15.44224 -15.30568 -14.70069 -14.57504 -14.37437 -13.94206 -13.59119 -13.48271 -13.35447 -13.31244 -13.16515 -13.01506 -12.92148 -12.87881 -12.83593 -12.65335 -12.48745 -12.39191 -12.27210 -12.17970 -12.08824 -11.92602 -11.59019 -11.54924 -11.36005 -11.07004 -11.03768 -10.58285 -10.42613 -10.12055 -9.56091 -8.14976 -6.32041 1.19947 1.44732 1.46014 1.53751 1.74878 1.91697 2.37528 2.72746 3.14136 3.20815 3.45683 3.54262 3.78090 3.79773 3.83870 3.92119 3.97880 4.30735 4.48973 4.51872 4.60407 4.61352 4.64815 4.70278 4.76484 4.79559 4.79635 4.80204 4.87916 4.90656 4.93875 5.02036 5.06927 5.10235 5.19433 5.29223 5.31525 5.35942 5.46551 5.50966 5.58602 5.60459 5.67704 5.83080 5.96818 6.20113 6.42115 6.76911 7.07902 7.35050 7.35725 7.67084 8.89842 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.019465 B = 0.002280 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.151719 B =12279.345745 C =13111.041686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.121 4.121 3 C 0.278 3.722 4 H -0.004 1.004 5 C -0.548 4.548 6 H 0.070 0.930 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.967 3.033 10 H -0.265 1.265 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.705 5.705 14 C 0.508 3.492 15 O -0.587 6.587 16 C -0.128 4.128 17 H 0.143 0.857 18 C -0.131 4.131 19 C 0.151 3.849 20 H 0.128 0.872 21 N -0.694 5.694 22 C 0.647 3.353 23 O -0.589 6.589 24 O -0.373 6.373 25 C 0.123 3.877 26 C -0.180 4.180 27 C -0.137 4.137 28 C -0.178 4.178 29 C -0.114 4.114 30 H 0.047 0.953 31 H 0.024 0.976 32 H 0.043 0.957 33 H 0.069 0.931 34 H 0.040 0.960 35 H 0.264 0.736 36 H 0.402 0.598 37 H 0.074 0.926 38 H 0.094 0.906 39 H 0.414 0.586 40 H 0.058 0.942 41 H 0.091 0.909 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.103 0.897 45 H 0.066 0.934 46 H 0.064 0.936 47 H 0.090 0.910 48 H 0.061 0.939 49 H 0.098 0.902 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.525 16.898 15.931 25.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.161 4.161 3 C 0.175 3.825 4 H 0.014 0.986 5 C -0.586 4.586 6 H 0.088 0.912 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.792 3.208 10 H -0.190 1.190 11 H -0.213 1.213 12 H -0.198 1.198 13 N -0.353 5.353 14 C 0.296 3.704 15 O -0.469 6.469 16 C -0.150 4.150 17 H 0.161 0.839 18 C -0.170 4.170 19 C 0.047 3.953 20 H 0.146 0.854 21 N -0.352 5.352 22 C 0.401 3.599 23 O -0.480 6.480 24 O -0.288 6.288 25 C 0.087 3.913 26 C -0.237 4.237 27 C -0.194 4.194 28 C -0.236 4.236 29 C -0.153 4.153 30 H 0.066 0.934 31 H 0.043 0.957 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.237 0.763 37 H 0.093 0.907 38 H 0.112 0.888 39 H 0.250 0.750 40 H 0.077 0.923 41 H 0.110 0.890 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.121 0.879 45 H 0.085 0.915 46 H 0.083 0.917 47 H 0.109 0.891 48 H 0.080 0.920 49 H 0.116 0.884 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.856 16.807 15.662 25.409 hybrid contribution 1.179 -0.298 -0.797 1.454 sum -9.677 16.510 14.865 24.232 Atomic orbital electron populations 1.21672 0.96844 0.99080 1.00368 1.21784 0.93874 0.99234 1.01162 1.18319 0.93399 0.89159 0.81666 0.98587 1.21566 0.91668 1.38777 1.06566 0.91196 1.25749 1.03118 0.94492 0.95122 1.70043 1.37021 1.38377 1.09864 0.85475 0.79411 0.78379 0.77527 1.18954 1.21264 1.19783 1.46283 1.15849 1.55856 1.17360 1.20910 0.81518 0.78028 0.89989 1.90643 1.52504 1.61213 1.42505 1.22601 0.99232 0.96891 0.96256 0.83936 1.23378 0.98777 0.92969 1.01910 1.22506 0.93083 0.79259 1.00453 0.85386 1.44837 1.65715 1.08564 1.16050 1.18300 0.76802 0.81122 0.83686 1.90879 1.52870 1.84437 1.19859 1.86326 1.77027 1.19151 1.46248 1.22419 0.96941 0.84209 0.87702 1.22479 0.95063 1.03728 1.02479 1.21891 1.01540 0.93772 1.02182 1.22466 0.99631 1.03913 0.97552 1.23199 0.95521 0.95027 1.01535 0.93374 0.95670 0.93748 0.91242 0.94129 0.92669 0.76302 0.90733 0.88785 0.75006 0.92330 0.89042 0.91778 0.91199 0.87892 0.91516 0.91738 0.89096 0.91958 0.88360 0.89518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.40 8.51 71.98 0.61 -4.79 16 2 C -0.12 -5.92 5.45 30.60 0.17 -5.75 16 3 C 0.28 14.02 2.24 44.25 0.10 14.12 16 4 H 0.00 -0.23 7.58 -2.38 -0.02 -0.24 16 5 C -0.55 -28.68 8.73 25.60 0.22 -28.46 16 6 H 0.07 3.43 7.74 -2.91 -0.02 3.41 16 7 C 0.02 0.82 5.29 84.65 0.45 1.27 16 8 N -0.91 -52.19 11.29 21.44 0.24 -51.94 16 9 Si 0.97 41.96 29.54 68.60 2.03 43.99 16 10 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 11 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 12 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 13 N -0.71 -27.82 5.02 -446.10 -2.24 -30.06 16 14 C 0.51 18.47 5.93 87.66 0.52 18.99 16 15 O -0.59 -26.13 13.04 -3.02 -0.04 -26.16 16 16 C -0.13 -3.08 4.14 -11.01 -0.05 -3.12 16 17 H 0.14 2.60 8.14 -2.38 -0.02 2.58 16 18 C -0.13 -2.92 7.43 31.12 0.23 -2.69 16 19 C 0.15 3.00 4.24 45.53 0.19 3.19 16 20 H 0.13 2.46 7.46 -2.39 -0.02 2.44 16 21 N -0.69 -14.36 5.36 -567.56 -3.04 -17.40 16 22 C 0.65 15.40 8.06 129.79 1.05 16.44 16 23 O -0.59 -16.11 11.48 19.80 0.23 -15.88 16 24 O -0.37 -8.10 9.94 -55.48 -0.55 -8.66 16 25 C 0.12 2.10 1.13 -10.79 -0.01 2.09 16 26 C -0.18 -3.09 8.37 71.98 0.60 -2.49 16 27 C -0.14 -1.53 8.85 71.98 0.64 -0.89 16 28 C -0.18 -2.86 8.37 71.98 0.60 -2.26 16 29 C -0.11 -2.44 7.16 31.13 0.22 -2.22 16 30 H 0.05 2.01 5.64 -2.39 -0.01 2.00 16 31 H 0.02 1.20 7.85 -2.38 -0.02 1.18 16 32 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 33 H 0.07 3.81 5.95 -2.39 -0.01 3.80 16 34 H 0.04 1.85 8.14 -2.39 -0.02 1.84 16 35 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 36 H 0.40 13.49 8.54 -92.71 -0.79 12.70 16 37 H 0.07 1.95 8.10 -2.39 -0.02 1.93 16 38 H 0.09 1.86 8.14 -2.39 -0.02 1.85 16 39 H 0.41 7.62 8.84 -92.71 -0.82 6.80 16 40 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.09 1.11 8.14 -2.38 -0.02 1.10 16 42 H 0.06 1.44 5.88 -2.39 -0.01 1.43 16 43 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.06 1.38 5.88 -2.39 -0.01 1.36 16 47 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 48 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 50 H 0.09 2.19 7.42 -2.39 -0.02 2.17 16 Total: -1.00 -68.61 393.78 1.51 -67.10 By element: Atomic # 1 Polarization: 36.25 SS G_CDS: -0.66 Total: 35.59 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: 5.55 Total: 3.43 kcal Atomic # 7 Polarization: -94.36 SS G_CDS: -5.04 Total: -99.40 kcal Atomic # 8 Polarization: -50.34 SS G_CDS: -0.36 Total: -50.70 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -68.61 1.51 -67.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496162894.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.477 kcal (2) G-P(sol) polarization free energy of solvation -68.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds