Wall clock time and date at job start Tue Mar 31 2020 14:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46963 * 2 1 4 4 C 1.52994 * 109.47216 * 239.99405 * 2 1 3 5 5 O 1.45202 * 109.46859 * 119.99463 * 2 1 3 6 6 C 1.34635 * 116.99834 * 59.99913 * 5 2 1 7 7 O 1.21512 * 120.00390 * 0.02562 * 6 5 2 8 8 N 1.34782 * 120.00111 * 179.97438 * 6 5 2 9 9 C 1.46496 * 120.00414 * 179.97438 * 8 6 5 10 10 H 1.08995 * 109.47005 * 325.01020 * 9 8 6 11 11 C 1.53002 * 109.46510 * 85.00098 * 9 8 6 12 12 C 1.53006 * 109.46654 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47380 * 300.00174 * 12 11 9 14 14 C 1.53001 * 109.47242 * 59.99720 * 13 12 11 15 15 H 1.09008 * 109.46731 * 60.00294 * 14 13 12 16 16 C 1.52997 * 109.47242 * 179.97438 * 14 13 12 17 17 N 1.46505 * 109.47212 * 295.00240 * 16 14 13 18 18 C 1.34771 * 119.99622 * 179.97438 * 17 16 14 19 19 O 1.21685 * 120.00526 * 0.02562 * 18 17 16 20 20 C 1.46381 * 119.99614 * 180.02562 * 18 17 16 21 21 H 1.07993 * 120.00106 * 0.02562 * 20 18 17 22 22 C 1.40051 * 119.99693 * 180.02562 * 20 18 17 23 23 N 1.30666 * 120.00364 * 359.97438 * 22 20 18 24 24 Si 1.86805 * 119.99754 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.46872 * 60.00052 * 24 22 20 26 26 H 1.48494 * 109.46914 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47008 * 300.00175 * 24 22 20 28 28 C 1.52994 * 109.47368 * 300.00569 * 14 13 12 29 29 H 1.09000 * 109.47282 * 300.00379 * 1 2 3 30 30 H 1.09004 * 109.47253 * 60.00575 * 1 2 3 31 31 H 1.09000 * 109.47132 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46955 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.46455 * 299.99277 * 3 2 1 34 34 H 1.09000 * 109.47431 * 59.99712 * 3 2 1 35 35 H 1.09000 * 109.47236 * 300.00140 * 4 2 1 36 36 H 1.08998 * 109.46921 * 60.00316 * 4 2 1 37 37 H 1.08999 * 109.47238 * 179.97438 * 4 2 1 38 38 H 0.97006 * 119.99505 * 0.02562 * 8 6 5 39 39 H 1.08998 * 109.47238 * 60.00781 * 11 9 8 40 40 H 1.08992 * 109.47406 * 299.99781 * 11 9 8 41 41 H 1.09000 * 109.46811 * 179.97438 * 12 11 9 42 42 H 1.08998 * 109.47136 * 60.00111 * 12 11 9 43 43 H 1.09008 * 109.47017 * 300.00189 * 13 12 11 44 44 H 1.08998 * 109.47192 * 180.02562 * 13 12 11 45 45 H 1.09002 * 109.47153 * 175.00232 * 16 14 13 46 46 H 1.09001 * 109.46832 * 55.00423 * 16 14 13 47 47 H 0.96996 * 119.99606 * 0.02562 * 17 16 14 48 48 H 0.97002 * 120.00059 * 179.97438 * 23 22 20 49 49 H 1.09000 * 109.47476 * 179.97438 * 28 14 13 50 50 H 1.09008 * 109.46970 * 299.99579 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0140 -0.6844 1.1857 6 6 1.6521 -1.9722 1.3385 7 8 0.9515 -2.5097 0.5038 8 7 2.0679 -2.6656 2.4169 9 6 1.6737 -4.0666 2.5836 10 1 0.6645 -4.2085 2.1973 11 6 2.6450 -4.9644 1.8145 12 6 2.2330 -6.4277 1.9880 13 6 2.2665 -6.7944 3.4730 14 6 1.2954 -5.8965 4.2421 15 1 0.2860 -6.0381 3.8556 16 6 1.3284 -6.2636 5.7270 17 7 0.8200 -7.6260 5.9047 18 6 0.7567 -8.1661 7.1379 19 8 1.1212 -7.5219 8.1037 20 6 0.2492 -9.5276 7.3153 21 1 -0.0739 -10.0995 6.4581 22 6 0.1829 -10.0886 8.5969 23 7 0.5743 -9.3969 9.6340 24 14 -0.4640 -11.8264 8.8233 25 1 0.3868 -12.7746 8.0601 26 1 -0.4315 -12.1828 10.2645 27 1 -1.8608 -11.9035 8.3250 28 6 1.7072 -4.4333 4.0686 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9562 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 1.6767 -1.7490 -1.2490 36 1 1.6767 -0.2076 -2.1391 37 1 3.1300 -0.7209 -1.2493 38 1 2.6275 -2.2366 3.0831 39 1 3.6543 -4.8226 2.2007 40 1 2.6208 -4.7036 0.7565 41 1 2.9247 -7.0673 1.4397 42 1 1.2237 -6.5693 1.6015 43 1 3.2759 -6.6528 3.8596 44 1 1.9735 -7.8369 3.5966 45 1 0.7047 -5.5671 6.2875 46 1 2.3539 -6.2078 6.0923 47 1 0.5298 -8.1396 5.1347 48 1 0.5280 -9.7854 10.5216 49 1 1.0151 -3.7935 4.6161 50 1 2.7166 -4.2917 4.4551 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496207388.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:40 Heat of formation + Delta-G solvation = -152.595279 kcal Electronic energy + Delta-G solvation = -28165.178276 eV Core-core repulsion = 24191.136608 eV Total energy + Delta-G solvation = -3974.041667 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.02910 -39.28872 -37.51895 -36.77721 -34.83965 -34.16894 -33.10279 -32.29995 -30.76011 -29.33545 -27.73502 -27.67654 -26.68660 -24.71357 -23.44918 -22.16019 -20.93950 -20.49774 -19.70975 -19.55691 -18.27488 -17.25186 -16.79658 -16.30773 -15.75376 -15.26751 -15.07254 -14.87730 -14.68293 -14.48354 -14.27094 -13.97342 -13.90342 -13.75125 -13.06250 -12.83557 -12.78081 -12.56814 -12.37359 -12.24726 -12.21276 -12.19532 -11.84767 -11.75563 -11.61017 -11.41095 -11.30699 -11.14231 -11.02953 -10.83632 -10.64052 -10.55690 -10.44718 -10.35396 -10.24517 -10.17991 -10.09041 -9.27116 -8.82712 -7.59466 -7.45972 -6.16395 -4.61812 1.96558 2.67528 3.16943 3.21745 3.23632 3.89112 4.12262 4.39823 4.44151 4.51864 4.58508 4.61154 4.65398 4.84691 4.96243 5.08231 5.13662 5.18662 5.21495 5.31435 5.36299 5.36933 5.42189 5.46328 5.49945 5.53552 5.54466 5.65870 5.71430 5.80391 5.87431 5.94687 5.98404 6.01173 6.03601 6.05577 6.20021 6.23478 6.30683 6.36518 6.42220 6.57085 6.66969 7.25713 7.45148 7.95963 8.13509 8.21776 8.35284 9.04551 9.56956 10.62639 10.81531 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.032220 B = 0.001943 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.809707 B =14405.345944 C =14714.873297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.141 4.141 4 C -0.183 4.183 5 O -0.367 6.367 6 C 0.650 3.350 7 O -0.568 6.568 8 N -0.706 5.706 9 C 0.164 3.836 10 H 0.092 0.908 11 C -0.129 4.129 12 C -0.115 4.115 13 C -0.116 4.116 14 C -0.091 4.091 15 H 0.076 0.924 16 C 0.140 3.860 17 N -0.767 5.767 18 C 0.554 3.446 19 O -0.582 6.582 20 C -0.546 4.546 21 H 0.066 0.934 22 C 0.087 3.913 23 N -0.769 5.769 24 Si 0.907 3.093 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.268 1.268 28 C -0.119 4.119 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.405 0.595 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.071 0.929 45 H 0.047 0.953 46 H 0.048 0.952 47 H 0.379 0.621 48 H 0.268 0.732 49 H 0.073 0.927 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.781 17.121 -20.772 27.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.198 4.198 4 C -0.240 4.240 5 O -0.282 6.282 6 C 0.403 3.597 7 O -0.457 6.457 8 N -0.364 5.364 9 C 0.061 3.939 10 H 0.110 0.890 11 C -0.168 4.168 12 C -0.153 4.153 13 C -0.153 4.153 14 C -0.110 4.110 15 H 0.094 0.906 16 C 0.014 3.986 17 N -0.423 5.423 18 C 0.358 3.642 19 O -0.465 6.465 20 C -0.584 4.584 21 H 0.085 0.915 22 C -0.132 4.132 23 N -0.398 5.398 24 Si 0.732 3.268 25 H -0.193 1.193 26 H -0.206 1.206 27 H -0.193 1.193 28 C -0.157 4.157 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.239 0.761 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.090 0.910 45 H 0.065 0.935 46 H 0.066 0.934 47 H 0.211 0.789 48 H 0.079 0.921 49 H 0.091 0.909 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.726 17.435 -20.305 27.021 hybrid contribution -0.196 -0.820 -0.024 0.844 sum 3.530 16.614 -20.328 26.491 Atomic orbital electron populations 1.22520 0.93962 1.05166 1.02448 1.22051 0.94397 0.91472 0.82129 1.21862 1.02218 0.92605 1.03116 1.22511 1.01486 1.03586 0.96447 1.86303 1.71597 1.23858 1.46448 1.18122 0.78812 0.80346 0.82440 1.90896 1.41205 1.70481 1.43156 1.44937 1.55353 1.12633 1.23491 1.21040 0.99606 0.76990 0.96245 0.89030 1.21951 0.99166 0.95204 1.00438 1.21500 1.01831 0.94970 0.97019 1.21632 0.99764 1.00044 0.93911 1.21307 0.99916 0.93236 0.96579 0.90597 1.20857 0.98785 0.86590 0.92346 1.46121 1.71756 1.14321 1.10067 1.18197 0.78333 0.87378 0.80269 1.90595 1.53123 1.63811 1.39017 1.20858 1.45559 0.98404 0.93531 0.91529 1.25705 0.93367 0.98575 0.95576 1.70011 1.34695 1.36055 0.99013 0.86450 0.79928 0.82817 0.77624 1.19312 1.20596 1.19306 1.21795 1.02941 0.97165 0.93826 0.92167 0.91203 0.89292 0.91506 0.90183 0.91449 0.89302 0.91214 0.92245 0.76053 0.91704 0.91691 0.91705 0.91717 0.91730 0.90998 0.93471 0.93396 0.78887 0.92103 0.90857 0.90899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.59 8.37 37.16 0.31 -1.28 16 2 C 0.14 1.18 1.13 -90.62 -0.10 1.08 16 3 C -0.14 -0.86 8.85 37.16 0.33 -0.53 16 4 C -0.18 -1.54 8.37 37.15 0.31 -1.23 16 5 O -0.37 -3.88 9.94 -40.31 -0.40 -4.28 16 6 C 0.65 7.55 8.02 54.06 0.43 7.99 16 7 O -0.57 -7.76 11.54 -19.28 -0.22 -7.98 16 8 N -0.71 -6.97 5.08 -58.73 -0.30 -7.27 16 9 C 0.16 1.70 2.45 -67.93 -0.17 1.54 16 10 H 0.09 1.09 7.58 -51.93 -0.39 0.70 16 11 C -0.13 -1.30 5.50 -26.73 -0.15 -1.45 16 12 C -0.12 -1.18 5.92 -26.73 -0.16 -1.34 16 13 C -0.12 -1.40 5.08 -26.73 -0.14 -1.53 16 14 C -0.09 -1.18 2.22 -90.62 -0.20 -1.38 16 15 H 0.08 0.98 8.14 -51.92 -0.42 0.56 16 16 C 0.14 2.55 5.07 -4.04 -0.02 2.53 16 17 N -0.77 -16.74 5.28 -61.72 -0.33 -17.07 16 18 C 0.55 15.75 7.75 -12.99 -0.10 15.65 16 19 O -0.58 -18.94 15.02 5.20 0.08 -18.87 16 20 C -0.55 -15.44 9.54 -35.63 -0.34 -15.78 16 21 H 0.07 1.71 7.85 -52.49 -0.41 1.30 16 22 C 0.09 2.45 5.50 -17.37 -0.10 2.35 16 23 N -0.77 -23.18 11.83 55.55 0.66 -22.53 16 24 Si 0.91 20.18 29.56 -169.99 -5.02 15.16 16 25 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 26 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 27 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 28 C -0.12 -1.28 4.67 -26.74 -0.12 -1.40 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.99 5.88 -51.93 -0.31 0.68 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.09 0.96 5.88 -51.93 -0.31 0.65 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.40 3.23 8.71 -40.82 -0.36 2.87 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.80 8.14 -51.92 -0.42 0.37 16 44 H 0.07 0.94 7.18 -51.93 -0.37 0.56 16 45 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 47 H 0.38 7.26 7.63 -40.82 -0.31 6.94 16 48 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16 49 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 LS Contribution 395.44 15.07 5.96 5.96 Total: -1.00 -35.21 395.44 -8.56 -43.77 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -8.78 Total: 7.88 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: -0.21 Total: 5.22 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: 0.03 Total: -46.86 kcal Atomic # 8 Polarization: -30.58 SS G_CDS: -0.54 Total: -31.12 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.21 -8.56 -43.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496207388.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.822 kcal (2) G-P(sol) polarization free energy of solvation -35.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds